HEADER SIGNALING PROTEIN 25-JAN-24 8RTE TITLE RAP FROM BACTERIOPHAGE PHI105 WITH PEPTIDE ERPVGT COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAP105; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PEPTIDE ERPVGT; COMPND 7 CHAIN: D, E; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PHAGE PHI105; SOURCE 3 ORGANISM_TAXID: 10717; SOURCE 4 GENE: PHI105_00140; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: BACILLUS PHAGE PHI105; SOURCE 10 ORGANISM_TAXID: 10717 KEYWDS RAP, ASPARTATE PHOSPHATASE, PHI3T, BACTERIOPHAGE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.FELIPE-RUIZ,S.ZAMORA-CABALLERO,A.MARINA REVDAT 2 28-AUG-24 8RTE 1 JRNL REVDAT 1 24-JUL-24 8RTE 0 JRNL AUTH A.FELIPE-RUIZ,S.ZAMORA-CABALLERO,S.O.BENDORI,J.R.PENADES, JRNL AUTH 2 A.ELDAR,A.MARINA JRNL TITL EXTRACELLULAR PROTEOLYSIS OF TANDEMLY DUPLICATED PHEROMONE JRNL TITL 2 PROPEPTIDES AFFORDS ADDITIONAL COMPLEXITY TO BACTERIAL JRNL TITL 3 QUORUM SENSING. JRNL REF PLOS BIOL. V. 22 02744 2024 JRNL REFN ESSN 1545-7885 JRNL PMID 39137235 JRNL DOI 10.1371/JOURNAL.PBIO.3002744 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 90.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 36364 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1781 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 90.1200 - 5.6400 0.99 2743 141 0.2014 0.2146 REMARK 3 2 5.6400 - 4.4800 0.99 2691 115 0.1951 0.2268 REMARK 3 3 4.4800 - 3.9100 0.99 2643 150 0.1776 0.2105 REMARK 3 4 3.9100 - 3.5600 0.98 2633 133 0.1965 0.2615 REMARK 3 5 3.5500 - 3.3000 0.99 2643 133 0.2167 0.2512 REMARK 3 6 3.3000 - 3.1100 1.00 2659 140 0.2389 0.2648 REMARK 3 7 3.1100 - 2.9500 1.00 2645 159 0.2419 0.3050 REMARK 3 8 2.9500 - 2.8200 1.00 2648 151 0.2416 0.2684 REMARK 3 9 2.8200 - 2.7100 1.00 2649 127 0.2492 0.3149 REMARK 3 10 2.7100 - 2.6200 1.00 2694 120 0.2584 0.3134 REMARK 3 11 2.6200 - 2.5400 1.00 2641 130 0.2636 0.3088 REMARK 3 12 2.5400 - 2.4600 1.00 2665 148 0.2720 0.2959 REMARK 3 13 2.4600 - 2.4000 0.99 2629 134 0.2868 0.3127 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.285 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.494 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.85 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 5966 REMARK 3 ANGLE : 0.645 8042 REMARK 3 CHIRALITY : 0.040 868 REMARK 3 PLANARITY : 0.005 1015 REMARK 3 DIHEDRAL : 14.951 2213 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 9 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5001 -4.1099 34.1502 REMARK 3 T TENSOR REMARK 3 T11: 0.3582 T22: 0.2962 REMARK 3 T33: 0.2806 T12: 0.0848 REMARK 3 T13: 0.0802 T23: 0.0259 REMARK 3 L TENSOR REMARK 3 L11: 1.5403 L22: 1.4019 REMARK 3 L33: 1.9658 L12: 0.1662 REMARK 3 L13: -0.0321 L23: -0.5455 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.3159 S13: -0.1628 REMARK 3 S21: -0.4264 S22: -0.1586 S23: -0.2037 REMARK 3 S31: 0.2772 S32: 0.3914 S33: 0.0102 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7946 8.8297 43.0558 REMARK 3 T TENSOR REMARK 3 T11: 0.1882 T22: 0.1388 REMARK 3 T33: 0.2030 T12: 0.0112 REMARK 3 T13: -0.0032 T23: -0.0079 REMARK 3 L TENSOR REMARK 3 L11: 0.9715 L22: 1.6932 REMARK 3 L33: 1.3720 L12: -0.1479 REMARK 3 L13: 0.3910 L23: -0.9054 REMARK 3 S TENSOR REMARK 3 S11: -0.0894 S12: -0.0154 S13: 0.0991 REMARK 3 S21: 0.0240 S22: 0.0806 S23: 0.0813 REMARK 3 S31: -0.0477 S32: -0.0472 S33: -0.0092 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 287 THROUGH 370 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8386 -9.4175 52.5724 REMARK 3 T TENSOR REMARK 3 T11: 0.1796 T22: 0.1806 REMARK 3 T33: 0.1767 T12: 0.0129 REMARK 3 T13: -0.0133 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 1.2268 L22: 1.3558 REMARK 3 L33: 2.1959 L12: 0.1704 REMARK 3 L13: -0.1174 L23: -0.1762 REMARK 3 S TENSOR REMARK 3 S11: 0.0222 S12: -0.0464 S13: -0.0742 REMARK 3 S21: -0.1137 S22: 0.0882 S23: 0.0749 REMARK 3 S31: 0.1047 S32: -0.1558 S33: -0.0926 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 10 THROUGH 106 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4278 -0.4286 81.4394 REMARK 3 T TENSOR REMARK 3 T11: 0.3455 T22: 0.3793 REMARK 3 T33: 0.3345 T12: -0.0410 REMARK 3 T13: -0.0194 T23: -0.0988 REMARK 3 L TENSOR REMARK 3 L11: 1.7446 L22: 1.6154 REMARK 3 L33: 1.5348 L12: -0.2146 REMARK 3 L13: 0.7145 L23: 0.8096 REMARK 3 S TENSOR REMARK 3 S11: -0.0309 S12: -0.3380 S13: 0.2505 REMARK 3 S21: 0.2862 S22: 0.1315 S23: -0.1432 REMARK 3 S31: -0.2243 S32: 0.3010 S33: 0.0793 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 107 THROUGH 188 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5631 -6.5183 65.4495 REMARK 3 T TENSOR REMARK 3 T11: 0.1928 T22: 0.1877 REMARK 3 T33: 0.2320 T12: 0.0050 REMARK 3 T13: -0.0044 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.5369 L22: 1.0629 REMARK 3 L33: 0.6509 L12: -0.0963 REMARK 3 L13: 0.2461 L23: 0.1675 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: -0.0488 S13: 0.1309 REMARK 3 S21: -0.0835 S22: -0.0221 S23: -0.2323 REMARK 3 S31: -0.1254 S32: 0.0592 S33: 0.0281 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 189 THROUGH 367 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8417 -17.4411 76.4613 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.2284 REMARK 3 T33: 0.1753 T12: 0.0038 REMARK 3 T13: -0.0080 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 2.0385 L22: 0.8193 REMARK 3 L33: 0.8720 L12: 0.0517 REMARK 3 L13: 0.2470 L23: -0.4784 REMARK 3 S TENSOR REMARK 3 S11: -0.0146 S12: -0.2252 S13: -0.1352 REMARK 3 S21: 0.1415 S22: 0.0391 S23: 0.0861 REMARK 3 S31: 0.0076 S32: -0.1223 S33: -0.0592 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 601 THROUGH 606 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7389 0.9429 44.2521 REMARK 3 T TENSOR REMARK 3 T11: 0.2945 T22: 0.2146 REMARK 3 T33: 0.2309 T12: 0.0259 REMARK 3 T13: -0.0337 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 0.2561 L22: 3.1213 REMARK 3 L33: 4.3682 L12: 0.4507 REMARK 3 L13: 0.5190 L23: -1.8777 REMARK 3 S TENSOR REMARK 3 S11: 0.0637 S12: 0.0426 S13: -0.0672 REMARK 3 S21: -0.3059 S22: 0.1981 S23: -0.1640 REMARK 3 S31: -0.0009 S32: 0.4252 S33: 0.0537 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 501 THROUGH 506 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2142 -12.8540 73.1486 REMARK 3 T TENSOR REMARK 3 T11: 0.2742 T22: 0.2196 REMARK 3 T33: 0.1726 T12: 0.0193 REMARK 3 T13: -0.0344 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 2.1660 L22: 1.9373 REMARK 3 L33: 3.9901 L12: -1.9212 REMARK 3 L13: 1.5073 L23: -0.5012 REMARK 3 S TENSOR REMARK 3 S11: -0.0628 S12: -0.3373 S13: 0.0527 REMARK 3 S21: 0.2581 S22: -0.1799 S23: -0.0994 REMARK 3 S31: -0.0312 S32: 0.0021 S33: -0.0105 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8RTE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-JAN-24. REMARK 100 THE DEPOSITION ID IS D_1292136134. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36368 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 90.120 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% GLYCEROL ETHOXYLATE, 10% REMARK 280 TETRAHYDROFURAN AND 0.1M TRIS-HCL PH8, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.15350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 CYS A 8 REMARK 465 LEU A 38 REMARK 465 PHE A 39 REMARK 465 ASP A 40 REMARK 465 GLU A 41 REMARK 465 MET A 42 REMARK 465 GLU A 43 REMARK 465 GLU A 44 REMARK 465 ALA A 82 REMARK 465 GLU A 83 REMARK 465 GLU A 84 REMARK 465 ILE A 85 REMARK 465 LYS A 86 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 LYS B 3 REMARK 465 LEU B 4 REMARK 465 ALA B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 CYS B 8 REMARK 465 VAL B 9 REMARK 465 ALA B 82 REMARK 465 GLU B 83 REMARK 465 GLU B 84 REMARK 465 ILE B 85 REMARK 465 LYS B 86 REMARK 465 LYS B 87 REMARK 465 GLN B 305 REMARK 465 ASP B 306 REMARK 465 GLU B 368 REMARK 465 GLY B 369 REMARK 465 LEU B 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 26 CD OE1 OE2 REMARK 470 LYS A 36 CE NZ REMARK 470 ASP A 45 CB CG OD1 OD2 REMARK 470 GLU A 47 CG CD OE1 OE2 REMARK 470 LYS A 60 CE NZ REMARK 470 LYS A 67 NZ REMARK 470 GLU A 79 CD OE1 OE2 REMARK 470 LYS A 87 CG CD CE NZ REMARK 470 ASP A 89 OD1 OD2 REMARK 470 HIS A 90 CG ND1 CD2 CE1 NE2 REMARK 470 MET A 91 CG SD CE REMARK 470 LYS A 107 CE NZ REMARK 470 GLU A 111 CD OE1 OE2 REMARK 470 LYS A 118 CE NZ REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 123 CE NZ REMARK 470 LYS A 125 CD CE NZ REMARK 470 ARG A 133 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 168 CD OE1 OE2 REMARK 470 GLU A 192 CD OE1 OE2 REMARK 470 LYS A 193 CE NZ REMARK 470 LYS A 278 CD CE NZ REMARK 470 LYS A 285 CE NZ REMARK 470 ARG A 286 CZ NH1 NH2 REMARK 470 LYS A 290 CE NZ REMARK 470 LYS A 309 CD CE NZ REMARK 470 LYS A 355 CE NZ REMARK 470 LYS A 363 CD CE NZ REMARK 470 LEU A 370 CG CD1 CD2 REMARK 470 GLU B 34 CD OE1 OE2 REMARK 470 ASP B 40 CG OD1 OD2 REMARK 470 LYS B 60 CG CD CE NZ REMARK 470 HIS B 74 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 79 CD OE1 OE2 REMARK 470 GLU B 111 CG CD OE1 OE2 REMARK 470 LYS B 112 CD CE NZ REMARK 470 LYS B 118 CE NZ REMARK 470 GLU B 166 CD OE1 OE2 REMARK 470 GLU B 168 CD OE1 OE2 REMARK 470 LYS B 245 CE NZ REMARK 470 LYS B 278 CD CE NZ REMARK 470 GLU B 282 CG CD OE1 OE2 REMARK 470 LYS B 285 CD CE NZ REMARK 470 ARG B 286 CD NE CZ NH1 NH2 REMARK 470 LYS B 290 CE NZ REMARK 470 GLN B 307 CG CD OE1 NE2 REMARK 470 LYS B 309 CG CD CE NZ REMARK 470 GLU B 312 CG CD OE1 OE2 REMARK 470 GLU B 339 CD OE1 OE2 REMARK 470 LYS B 363 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 80 -158.71 -120.72 REMARK 500 LEU A 190 73.33 -104.65 REMARK 500 ASN A 289 84.96 -157.38 REMARK 500 MET B 42 -72.53 -101.56 REMARK 500 LEU B 190 72.31 -103.49 REMARK 500 ASN B 289 87.65 -158.09 REMARK 500 REMARK 500 REMARK: NULL DBREF 8RTE A 1 370 UNP D6R410 D6R410_BPPH1 20 389 DBREF 8RTE B 1 370 UNP D6R410 D6R410_BPPH1 20 389 DBREF 8RTE D 601 606 PDB 8RTE 8RTE 601 606 DBREF 8RTE E 501 506 PDB 8RTE 8RTE 501 506 SEQRES 1 A 370 MET SER LYS LEU ALA SER GLU CYS VAL ALA ASN ILE LEU SEQRES 2 A 370 ASN ASP TRP TYR ILE ALA ILE LYS GLN GLN ASP ALA GLU SEQRES 3 A 370 SER ALA GLU ARG TYR PHE GLU GLU VAL LYS PRO LEU PHE SEQRES 4 A 370 ASP GLU MET GLU GLU ASP GLN GLU VAL LEU MET TYR TYR SEQRES 5 A 370 SER LEU LEU GLU GLU ARG HIS LYS MET LEU LEU TYR GLN SEQRES 6 A 370 VAL LYS GLY GLU GLU LEU PRO PRO HIS SER TYR PHE ASN SEQRES 7 A 370 GLU ASN HIS ALA GLU GLU ILE LYS LYS THR ASP HIS MET SEQRES 8 A 370 ILE GLU TYR TYR PHE PHE LEU PHE GLU ALA LEU TYR GLU SEQRES 9 A 370 SER HIS LYS ARG ASN PHE GLU LYS ALA ILE THR LEU PHE SEQRES 10 A 370 LYS ILE ALA GLU LYS LYS LEU LYS ASP ILE PRO ASP CYS SEQRES 11 A 370 ILE GLU ARG ALA GLU PHE TYR SER LYS VAL ALA SER MET SEQRES 12 A 370 TYR MET MET LEU ARG GLN SER LEU ILE SER LEU ASN TYR SEQRES 13 A 370 ILE ASN ASP SER ILE GLN ILE TYR ARG GLU ASN GLU GLY SEQRES 14 A 370 TYR LYS ARG LYS LEU ALA THR SER LEU MET ILE VAL GLY SEQRES 15 A 370 GLN ASN TYR THR ASP LEU GLY LEU TYR GLU LYS ALA GLU SEQRES 16 A 370 GLU SER PHE LEU GLU ALA ILE ARG ILE SER ARG VAL LEU SEQRES 17 A 370 HIS ASP SER LEU PHE THR ALA LEU ILE HIS HIS ASN LEU SEQRES 18 A 370 SER ILE THR TYR SER ALA ALA ASN ARG SER GLN ASP CYS SEQRES 19 A 370 ILE ASN ALA LEU LYS LYS ALA ILE ARG ASN LYS GLU TRP SEQRES 20 A 370 ARG ASP SER VAL TYR TYR ILE ASN SER LEU TYR MET PHE SEQRES 21 A 370 LEU LYS GLU LEU TYR LYS ILE GLY ASP VAL ASN LYS MET SEQRES 22 A 370 PRO TYR TYR TYR LYS LYS THR LYS GLU TYR PHE LYS ARG SEQRES 23 A 370 LYS GLU ASN LYS VAL TYR GLU ALA LYS ILE ASN ILE ILE SEQRES 24 A 370 TYR GLY LEU LEU GLN GLN ASP GLN ARG LYS SER ILE GLU SEQRES 25 A 370 THR CYS ARG GLY GLY ILE SER TYR LEU TYR GLU VAL ASN SEQRES 26 A 370 ASP LEU ASP SER VAL PHE ASP LEU SER LEU VAL ILE SER SEQRES 27 A 370 GLU HIS CYS GLU LYS HIS GLY LEU TYR LYS GLU ALA LEU SEQRES 28 A 370 GLU PHE SER LYS HIS ALA ILE LEU ALA GLU GLU LYS MET SEQRES 29 A 370 ARG HIS LEU GLU GLY LEU SEQRES 1 B 370 MET SER LYS LEU ALA SER GLU CYS VAL ALA ASN ILE LEU SEQRES 2 B 370 ASN ASP TRP TYR ILE ALA ILE LYS GLN GLN ASP ALA GLU SEQRES 3 B 370 SER ALA GLU ARG TYR PHE GLU GLU VAL LYS PRO LEU PHE SEQRES 4 B 370 ASP GLU MET GLU GLU ASP GLN GLU VAL LEU MET TYR TYR SEQRES 5 B 370 SER LEU LEU GLU GLU ARG HIS LYS MET LEU LEU TYR GLN SEQRES 6 B 370 VAL LYS GLY GLU GLU LEU PRO PRO HIS SER TYR PHE ASN SEQRES 7 B 370 GLU ASN HIS ALA GLU GLU ILE LYS LYS THR ASP HIS MET SEQRES 8 B 370 ILE GLU TYR TYR PHE PHE LEU PHE GLU ALA LEU TYR GLU SEQRES 9 B 370 SER HIS LYS ARG ASN PHE GLU LYS ALA ILE THR LEU PHE SEQRES 10 B 370 LYS ILE ALA GLU LYS LYS LEU LYS ASP ILE PRO ASP CYS SEQRES 11 B 370 ILE GLU ARG ALA GLU PHE TYR SER LYS VAL ALA SER MET SEQRES 12 B 370 TYR MET MET LEU ARG GLN SER LEU ILE SER LEU ASN TYR SEQRES 13 B 370 ILE ASN ASP SER ILE GLN ILE TYR ARG GLU ASN GLU GLY SEQRES 14 B 370 TYR LYS ARG LYS LEU ALA THR SER LEU MET ILE VAL GLY SEQRES 15 B 370 GLN ASN TYR THR ASP LEU GLY LEU TYR GLU LYS ALA GLU SEQRES 16 B 370 GLU SER PHE LEU GLU ALA ILE ARG ILE SER ARG VAL LEU SEQRES 17 B 370 HIS ASP SER LEU PHE THR ALA LEU ILE HIS HIS ASN LEU SEQRES 18 B 370 SER ILE THR TYR SER ALA ALA ASN ARG SER GLN ASP CYS SEQRES 19 B 370 ILE ASN ALA LEU LYS LYS ALA ILE ARG ASN LYS GLU TRP SEQRES 20 B 370 ARG ASP SER VAL TYR TYR ILE ASN SER LEU TYR MET PHE SEQRES 21 B 370 LEU LYS GLU LEU TYR LYS ILE GLY ASP VAL ASN LYS MET SEQRES 22 B 370 PRO TYR TYR TYR LYS LYS THR LYS GLU TYR PHE LYS ARG SEQRES 23 B 370 LYS GLU ASN LYS VAL TYR GLU ALA LYS ILE ASN ILE ILE SEQRES 24 B 370 TYR GLY LEU LEU GLN GLN ASP GLN ARG LYS SER ILE GLU SEQRES 25 B 370 THR CYS ARG GLY GLY ILE SER TYR LEU TYR GLU VAL ASN SEQRES 26 B 370 ASP LEU ASP SER VAL PHE ASP LEU SER LEU VAL ILE SER SEQRES 27 B 370 GLU HIS CYS GLU LYS HIS GLY LEU TYR LYS GLU ALA LEU SEQRES 28 B 370 GLU PHE SER LYS HIS ALA ILE LEU ALA GLU GLU LYS MET SEQRES 29 B 370 ARG HIS LEU GLU GLY LEU SEQRES 1 D 6 GLU ARG PRO VAL GLY THR SEQRES 1 E 6 GLU ARG PRO VAL GLY THR FORMUL 5 HOH *89(H2 O) HELIX 1 AA1 VAL A 9 GLN A 22 1 14 HELIX 2 AA2 ASP A 24 LYS A 36 1 13 HELIX 3 AA3 GLN A 46 GLY A 68 1 23 HELIX 4 AA4 ASP A 89 LYS A 107 1 19 HELIX 5 AA5 ASN A 109 LYS A 125 1 17 HELIX 6 AA6 ASP A 129 LEU A 147 1 19 HELIX 7 AA7 GLN A 149 GLU A 166 1 18 HELIX 8 AA8 TYR A 170 LEU A 188 1 19 HELIX 9 AA9 LEU A 190 LEU A 208 1 19 HELIX 10 AB1 ASP A 210 ALA A 228 1 19 HELIX 11 AB2 ARG A 230 ARG A 243 1 14 HELIX 12 AB3 ASN A 244 SER A 250 1 7 HELIX 13 AB4 TYR A 252 ILE A 267 1 16 HELIX 14 AB5 ASP A 269 ASN A 271 5 3 HELIX 15 AB6 LYS A 272 LYS A 287 1 16 HELIX 16 AB7 ASN A 289 GLN A 304 1 16 HELIX 17 AB8 ASP A 306 VAL A 324 1 19 HELIX 18 AB9 ASP A 326 HIS A 344 1 19 HELIX 19 AC1 LEU A 346 HIS A 366 1 21 HELIX 20 AC2 ASN B 11 GLN B 22 1 12 HELIX 21 AC3 ASP B 24 PHE B 39 1 16 HELIX 22 AC4 ASP B 45 GLY B 68 1 24 HELIX 23 AC5 SER B 75 GLU B 79 5 5 HELIX 24 AC6 ASP B 89 LYS B 107 1 19 HELIX 25 AC7 ASN B 109 LYS B 125 1 17 HELIX 26 AC8 ASP B 129 LEU B 147 1 19 HELIX 27 AC9 GLN B 149 GLU B 166 1 18 HELIX 28 AD1 TYR B 170 LEU B 188 1 19 HELIX 29 AD2 LEU B 190 LEU B 208 1 19 HELIX 30 AD3 ASP B 210 ALA B 228 1 19 HELIX 31 AD4 ARG B 230 ARG B 243 1 14 HELIX 32 AD5 ASN B 244 SER B 250 1 7 HELIX 33 AD6 TYR B 252 ILE B 267 1 16 HELIX 34 AD7 ASP B 269 ASN B 271 5 3 HELIX 35 AD8 LYS B 272 LYS B 287 1 16 HELIX 36 AD9 ASN B 289 LEU B 302 1 14 HELIX 37 AE1 ARG B 308 VAL B 324 1 17 HELIX 38 AE2 ASP B 326 HIS B 344 1 19 HELIX 39 AE3 LEU B 346 LEU B 367 1 22 CRYST1 65.300 80.307 91.707 90.00 100.68 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015314 0.000000 0.002888 0.00000 SCALE2 0.000000 0.012452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011097 0.00000