HEADER RNA 31-JAN-24 8RUM TITLE STRUCTURE OF OCEANOBACILLUS IHEYENSIS GROUP II INTRON IN THE PRESENCE TITLE 2 OF LI+, MG2+, AND INTRONISTAT B COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOMAINS 1-5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: OCEANOBACILLUS IHEYENSIS; SOURCE 4 ORGANISM_TAXID: 182710 KEYWDS RIBOZYME, METALLOENZYME, SELF-SPLICING, RETROTRANSPOSITION, RNA EXPDTA X-RAY DIFFRACTION AUTHOR I.SILVESTRI,M.MARCIA REVDAT 1 19-JUN-24 8RUM 0 JRNL AUTH I.SILVESTRI,J.MANIGRASSO,A.ANDREANI,N.BRINDANI,C.MAS, JRNL AUTH 2 J.B.REISER,P.VIDOSSICH,G.MARTINO,A.MCCARTHY,M.DE VIVO, JRNL AUTH 3 M.MARCIA JRNL TITL TARGETING THE CONSERVED ACTIVE SITE OF SPLICING MACHINES JRNL TITL 2 WITH SPECIFIC AND SELECTIVE SMALL MOLECULE MODULATORS JRNL REF NAT COMMUN 2024 JRNL REFN ESSN 2041-1723 JRNL DOI 10.1038/S41467-024-48697-0 REMARK 2 REMARK 2 RESOLUTION. 3.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.07 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 21270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1109 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.62 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1541 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.13 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 58 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 8405 REMARK 3 HETEROGEN ATOMS : 69 REMARK 3 SOLVENT ATOMS : 89 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 149.1 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : 8.58000 REMARK 3 B33 (A**2) : -8.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.565 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.503 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 71.479 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 9500 ; 0.006 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 3848 ; 0.002 ; 0.019 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14741 ; 2.116 ; 1.843 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9344 ; 0.597 ; 1.666 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1956 ; 0.070 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4742 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1483 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 9500 ; 9.155 ;10.321 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 9501 ; 9.154 ;10.321 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 14742 ;13.984 ;18.663 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 14179 ;18.005 ;30.010 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 14180 ;18.004 ;30.010 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -2 A 515 REMARK 3 ORIGIN FOR THE GROUP (A): 24.3463 -8.2735 -25.3438 REMARK 3 T TENSOR REMARK 3 T11: 0.5247 T22: 0.0780 REMARK 3 T33: 0.7237 T12: -0.0599 REMARK 3 T13: -0.0369 T23: 0.0418 REMARK 3 L TENSOR REMARK 3 L11: 0.6288 L22: 1.3441 REMARK 3 L33: 1.5375 L12: 0.6314 REMARK 3 L13: 0.9730 L23: 0.9900 REMARK 3 S TENSOR REMARK 3 S11: -0.1561 S12: 0.1754 S13: 0.1495 REMARK 3 S21: -0.4618 S22: 0.0623 S23: 0.1370 REMARK 3 S31: -0.1943 S32: 0.2613 S33: 0.0939 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8RUM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 05-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136276. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22380 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.070 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MG-ACETATE, 200 MM KCL, 50 MM REMARK 280 LICL, 50 MM NA-HEPES PH 7.0, 4% PEG 8000, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 303.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.57450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 112.10200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.41700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 112.10200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.57450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.41700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 56570 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -311.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G A 391 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G A 0 N9 C8 N7 C5 C6 O6 N1 REMARK 470 G A 0 C2 N2 N3 C4 REMARK 470 G A 1 N9 C8 N7 C5 C6 O6 N1 REMARK 470 G A 1 C2 N2 N3 C4 REMARK 470 U A 2 N1 C2 O2 N3 C4 O4 C5 REMARK 470 U A 2 C6 REMARK 470 G A 390 O5' C5' C4' O4' C3' O3' C2' REMARK 470 G A 390 O2' C1' N9 C8 N7 C5 C6 REMARK 470 G A 390 O6 N1 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 514 O HOH A 523 1.92 REMARK 500 O HOH A 503 O HOH A 510 1.98 REMARK 500 O HOH A 503 O HOH A 521 1.98 REMARK 500 OP1 G A 107 O HOH A 501 1.99 REMARK 500 O2' A A 106 O2 C A 367 2.08 REMARK 500 OP1 C A 358 OP1 C A 377 2.13 REMARK 500 OP1 A A 376 O2' G A 378 2.16 REMARK 500 OP2 C A 377 O24 VTE A 401 2.16 REMARK 500 N7 G A 142 O HOH A 502 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 G A 5 O3' - P - OP1 ANGL. DEV. = 8.0 DEGREES REMARK 500 G A 5 O5' - P - OP1 ANGL. DEV. = -6.6 DEGREES REMARK 500 G A 15 O3' - P - OP2 ANGL. DEV. = 7.4 DEGREES REMARK 500 G A 15 O3' - P - OP1 ANGL. DEV. = -14.1 DEGREES REMARK 500 G A 16 O5' - P - OP1 ANGL. DEV. = 10.9 DEGREES REMARK 500 G A 28 O5' - P - OP2 ANGL. DEV. = 9.8 DEGREES REMARK 500 G A 32 O3' - P - OP2 ANGL. DEV. = 6.7 DEGREES REMARK 500 G A 32 O5' - P - OP2 ANGL. DEV. = -6.2 DEGREES REMARK 500 G A 34 O3' - P - O5' ANGL. DEV. = -13.0 DEGREES REMARK 500 U A 37 O3' - P - OP1 ANGL. DEV. = 6.7 DEGREES REMARK 500 C A 38 O5' - P - OP2 ANGL. DEV. = -15.3 DEGREES REMARK 500 U A 47 O3' - P - OP1 ANGL. DEV. = 9.7 DEGREES REMARK 500 U A 47 O5' - P - OP1 ANGL. DEV. = -10.3 DEGREES REMARK 500 G A 48 O5' - P - OP1 ANGL. DEV. = -9.0 DEGREES REMARK 500 A A 49 O3' - P - OP1 ANGL. DEV. = 7.7 DEGREES REMARK 500 G A 52 O3' - P - OP1 ANGL. DEV. = 7.7 DEGREES REMARK 500 A A 56 O3' - P - O5' ANGL. DEV. = -19.0 DEGREES REMARK 500 A A 56 O5' - P - OP2 ANGL. DEV. = 8.6 DEGREES REMARK 500 U A 59 O3' - P - O5' ANGL. DEV. = -16.2 DEGREES REMARK 500 A A 60 O3' - P - OP2 ANGL. DEV. = 12.8 DEGREES REMARK 500 A A 60 O5' - P - OP1 ANGL. DEV. = 9.2 DEGREES REMARK 500 C A 62 O3' - P - OP1 ANGL. DEV. = 11.0 DEGREES REMARK 500 A A 63 O3' - P - OP2 ANGL. DEV. = 6.7 DEGREES REMARK 500 G A 64 O5' - P - OP2 ANGL. DEV. = -7.8 DEGREES REMARK 500 U A 65 O3' - P - OP1 ANGL. DEV. = 13.4 DEGREES REMARK 500 C A 70 C3' - C2' - C1' ANGL. DEV. = -4.7 DEGREES REMARK 500 U A 71 O5' - P - OP1 ANGL. DEV. = 11.1 DEGREES REMARK 500 G A 75 O3' - P - OP2 ANGL. DEV. = 8.5 DEGREES REMARK 500 A A 77 O3' - P - O5' ANGL. DEV. = -11.5 DEGREES REMARK 500 G A 79 O5' - P - OP1 ANGL. DEV. = -7.1 DEGREES REMARK 500 U A 88 O5' - P - OP2 ANGL. DEV. = -10.6 DEGREES REMARK 500 G A 89 O5' - P - OP2 ANGL. DEV. = -7.1 DEGREES REMARK 500 C A 91 O3' - P - O5' ANGL. DEV. = -11.5 DEGREES REMARK 500 G A 92 O3' - P - O5' ANGL. DEV. = -12.6 DEGREES REMARK 500 G A 92 O4' - C1' - N9 ANGL. DEV. = -4.8 DEGREES REMARK 500 A A 105 O3' - P - O5' ANGL. DEV. = -13.5 DEGREES REMARK 500 G A 108 O3' - P - OP1 ANGL. DEV. = 6.9 DEGREES REMARK 500 A A 109 O3' - P - OP1 ANGL. DEV. = 7.6 DEGREES REMARK 500 A A 110 O5' - P - OP1 ANGL. DEV. = -5.9 DEGREES REMARK 500 A A 121 O3' - P - O5' ANGL. DEV. = -16.8 DEGREES REMARK 500 A A 121 O5' - P - OP1 ANGL. DEV. = 9.5 DEGREES REMARK 500 U A 126 O3' - P - O5' ANGL. DEV. = -11.8 DEGREES REMARK 500 G A 133 O5' - P - OP1 ANGL. DEV. = -9.1 DEGREES REMARK 500 G A 136 O3' - P - O5' ANGL. DEV. = -13.9 DEGREES REMARK 500 A A 171 O5' - P - OP1 ANGL. DEV. = -11.0 DEGREES REMARK 500 G A 173 O5' - P - OP1 ANGL. DEV. = 7.5 DEGREES REMARK 500 A A 174 O3' - P - O5' ANGL. DEV. = -19.2 DEGREES REMARK 500 U A 177 O3' - P - O5' ANGL. DEV. = -11.9 DEGREES REMARK 500 C A 180 O3' - P - OP1 ANGL. DEV. = 7.2 DEGREES REMARK 500 U A 195 C2' - C3' - O3' ANGL. DEV. = -16.5 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 86 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 3 OP1 REMARK 620 2 U A 4 OP2 106.7 REMARK 620 3 HOH A 547 O 137.3 72.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 408 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 6 OP1 REMARK 620 2 HOH A 545 O 62.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 406 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 66 OP2 REMARK 620 2 A A 67 OP1 99.8 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 410 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 67 OP2 REMARK 620 2 G A 68 O6 157.5 REMARK 620 3 HOH A 565 O 97.9 92.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 416 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 135 OP2 REMARK 620 2 G A 136 OP2 105.3 REMARK 620 3 HOH A 539 O 146.7 97.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 415 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 142 OP2 REMARK 620 2 HOH A 502 O 149.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 409 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 169 OP1 REMARK 620 2 HOH A 509 O 70.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 435 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 178 O4 REMARK 620 2 A A 184 OP2 98.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 432 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 179 OP1 REMARK 620 2 HOH A 560 O 79.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 428 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 G A 269 OP2 REMARK 620 2 HOH A 511 O 70.9 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 414 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 283 OP2 REMARK 620 2 HOH A 580 O 79.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 431 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 A A 349 OP2 REMARK 620 2 G A 350 OP2 99.8 REMARK 620 3 HOH A 535 O 71.9 95.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 422 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 358 OP1 REMARK 620 2 G A 359 OP2 83.1 REMARK 620 3 C A 377 OP1 64.6 72.4 REMARK 620 4 VTE A 401 O24 149.8 116.8 98.2 REMARK 620 5 VTE A 401 O26 89.5 132.5 143.4 92.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 423 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 C A 360 OP1 REMARK 620 2 G A 374 OP2 105.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 421 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 U A 375 OP1 REMARK 620 2 C A 377 OP2 87.7 REMARK 620 3 VTE A 401 O22 98.3 140.4 REMARK 620 4 VTE A 401 O24 138.6 65.6 85.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 412 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 533 O REMARK 620 2 HOH A 546 O 143.2 REMARK 620 N 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E8R RELATED DB: PDB REMARK 900 RELATED ID: 4E8V RELATED DB: PDB REMARK 900 RELATED ID: 4FAX RELATED DB: PDB REMARK 900 RELATED ID: 4E8P RELATED DB: PDB REMARK 900 RELATED ID: 4E8Q RELATED DB: PDB REMARK 900 RELATED ID: 4FAU RELATED DB: PDB REMARK 900 RELATED ID: 4E8M RELATED DB: PDB REMARK 900 RELATED ID: 4FAQ RELATED DB: PDB REMARK 900 RELATED ID: 4E8N RELATED DB: PDB REMARK 900 RELATED ID: 4FAR RELATED DB: PDB REMARK 900 RELATED ID: 8OLS RELATED DB: PDB REMARK 900 RELATED ID: 8OLV RELATED DB: PDB REMARK 900 RELATED ID: 8OLW RELATED DB: PDB DBREF 8RUM A -2 391 PDB 8RUM 8RUM -2 391 SEQRES 1 A 394 G G G G U G U G C C C G G SEQRES 2 A 394 C A U G G G U G C A G U C SEQRES 3 A 394 U A U A G G G U G A G A G SEQRES 4 A 394 U C C C G A A C U G U G A SEQRES 5 A 394 A G G C A G A A G U A A C SEQRES 6 A 394 A G U U A G C C U A A C G SEQRES 7 A 394 C A A G G G U G U C C G U SEQRES 8 A 394 G G C G A C A U G G A A U SEQRES 9 A 394 C U G A A G G A A G C G G SEQRES 10 A 394 A C G G C A A A C C U U C SEQRES 11 A 394 G G U C U G A G G A A C A SEQRES 12 A 394 C G A A C U U C A U A U G SEQRES 13 A 394 A G G C U A G G U A U C A SEQRES 14 A 394 A U G G A U G A G U U U G SEQRES 15 A 394 C A U A A C A A A A C A A SEQRES 16 A 394 A G U C C U U U C U G C C SEQRES 17 A 394 A A A G U U G G U A C A G SEQRES 18 A 394 A G U A A A U G A A G C A SEQRES 19 A 394 G A U U G A U G A A G G G SEQRES 20 A 394 A A A G A C U G C A U U C SEQRES 21 A 394 U U A C C C G G G G A G G SEQRES 22 A 394 U C U G G A A A C A G A A SEQRES 23 A 394 G U C A G C A G A A G U C SEQRES 24 A 394 A U A G U A C C C U G U U SEQRES 25 A 394 C G C A G G G G A A G G A SEQRES 26 A 394 C G G A A C A A G U A U G SEQRES 27 A 394 G C G U U C G C G C C U A SEQRES 28 A 394 A G C U U G A A C C G C C SEQRES 29 A 394 G U A U A C C G A A C G G SEQRES 30 A 394 U A C G U A C G G U G G U SEQRES 31 A 394 G U G G HET VTE A 401 30 HET MG A 402 1 HET MG A 403 1 HET MG A 404 1 HET MG A 405 1 HET MG A 406 1 HET MG A 407 1 HET MG A 408 1 HET MG A 409 1 HET MG A 410 1 HET MG A 411 1 HET MG A 412 1 HET MG A 413 1 HET MG A 414 1 HET MG A 415 1 HET MG A 416 1 HET MG A 417 1 HET MG A 418 1 HET MG A 419 1 HET MG A 420 1 HET MG A 421 1 HET MG A 422 1 HET MG A 423 1 HET MG A 424 1 HET MG A 425 1 HET MG A 426 1 HET MG A 427 1 HET MG A 428 1 HET MG A 429 1 HET MG A 430 1 HET MG A 431 1 HET MG A 432 1 HET MG A 433 1 HET MG A 434 1 HET MG A 435 1 HET MG A 436 1 HET MG A 437 1 HET MG A 438 1 HET MG A 439 1 HET MG A 440 1 HETNAM VTE ~{N}-(2-PYRROLIDIN-1-YLETHYL)-2-[3,4,5-TRIS(OXIDANYL) HETNAM 2 VTE PHENYL]CARBONYL-1-BENZOFURAN-5-CARBOXAMIDE HETNAM MG MAGNESIUM ION FORMUL 2 VTE C22 H22 N2 O6 FORMUL 3 MG 39(MG 2+) FORMUL 42 HOH *89(H2 O) LINK OP1 G A 3 MG MG A 402 1555 1555 2.98 LINK OP2 U A 4 MG MG A 402 1555 1555 2.02 LINK O4 U A 4 MG MG A 439 1555 1555 2.00 LINK OP1 C A 6 MG MG A 408 1555 1555 2.00 LINK OP2 G A 28 MG MG A 434 1555 1555 2.02 LINK OP2 U A 66 MG MG A 406 1555 1555 2.02 LINK OP1 A A 67 MG MG A 406 1555 1555 2.01 LINK OP2 A A 67 MG MG A 410 1555 1555 2.00 LINK O6 G A 68 MG MG A 410 1555 1555 2.04 LINK OP2 C A 76 MG MG A 418 1555 1555 2.00 LINK O4 U A 88 MG MG A 419 1555 1555 2.03 LINK OP1 A A 105 MG MG A 413 1555 1555 2.00 LINK OP1 G A 111 MG MG A 438 1555 1555 2.00 LINK OP2 G A 135 MG MG A 416 1555 1555 2.88 LINK OP2 G A 136 MG MG A 416 1555 1555 1.98 LINK OP2 G A 142 MG MG A 415 1555 1555 2.02 LINK OP2 C A 145 MG MG A 420 1555 1555 2.00 LINK OP1 G A 169 MG MG A 409 1555 1555 2.03 LINK OP2 G A 169 MG MG A 437 1555 1555 2.59 LINK O4 U A 178 MG MG A 435 1555 1555 1.99 LINK OP1 G A 179 MG MG A 432 1555 1555 2.04 LINK OP1 C A 180 MG MG A 436 1555 1555 2.02 LINK O3' A A 183 MG MG A 429 1555 1555 2.85 LINK OP2 A A 184 MG MG A 435 1555 1555 2.79 LINK OP2 G A 269 MG MG A 428 1555 1555 2.00 LINK OP2 A A 283 MG MG A 414 1555 1555 2.03 LINK OP1 U A 285 MG MG A 411 1555 1555 2.04 LINK O6 G A 325 MG MG A 403 1555 1555 2.00 LINK O4 U A 332 MG MG A 433 1555 1555 2.03 LINK OP2 A A 349 MG MG A 431 1555 1555 1.98 LINK OP2 G A 350 MG MG A 431 1555 1555 1.98 LINK OP1 C A 358 MG MG A 422 1555 1555 1.99 LINK OP2 G A 359 MG MG A 422 1555 1555 1.99 LINK OP1 C A 360 MG MG A 423 1555 1555 2.05 LINK OP2 C A 372 MG MG A 405 1555 1555 2.03 LINK OP2 G A 374 MG MG A 423 1555 1555 2.00 LINK OP1 U A 375 MG MG A 421 1555 1555 1.98 LINK OP2 C A 377 MG MG A 421 1555 1555 2.01 LINK OP1 C A 377 MG MG A 422 1555 1555 2.00 LINK O6 G A 386 MG MG A 440 1555 1555 2.98 LINK O22 VTE A 401 MG MG A 421 1555 1555 2.00 LINK O24 VTE A 401 MG MG A 421 1555 1555 1.98 LINK O24 VTE A 401 MG MG A 422 1555 1555 1.98 LINK O26 VTE A 401 MG MG A 422 1555 1555 2.00 LINK MG MG A 402 O HOH A 547 1555 1555 2.49 LINK MG MG A 404 O HOH A 557 1555 1555 2.07 LINK MG MG A 407 O HOH A 589 1555 1555 1.94 LINK MG MG A 408 O HOH A 545 1555 1555 2.93 LINK MG MG A 409 O HOH A 509 1555 1555 2.02 LINK MG MG A 410 O HOH A 565 1555 1555 1.99 LINK MG MG A 412 O HOH A 533 1555 1555 2.00 LINK MG MG A 412 O HOH A 546 1555 1555 2.08 LINK MG MG A 414 O HOH A 580 1555 1555 2.82 LINK MG MG A 415 O HOH A 502 1555 1555 2.03 LINK MG MG A 416 O HOH A 539 1555 1555 2.44 LINK MG MG A 417 O HOH A 581 1555 1555 2.01 LINK MG MG A 424 O HOH A 576 1555 1555 2.01 LINK MG MG A 427 O HOH A 556 1555 1555 2.85 LINK MG MG A 428 O HOH A 511 1555 1555 2.08 LINK MG MG A 430 O HOH A 526 1555 1555 2.00 LINK MG MG A 431 O HOH A 535 1555 1555 2.59 LINK MG MG A 432 O HOH A 560 1555 1555 2.34 CRYST1 89.149 94.834 224.204 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011217 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010545 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004460 0.00000