HEADER LYASE 08-FEB-24 8RYE TITLE AZEJ IN COMPLEX WITH MTA AND AZE FROM PSEUDOMONAS AERUGINOSA (P2(1) TITLE 2 2(1)2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS I SAM-DEPENDENT METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: PA3335; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PETDUET KEYWDS NATURAL PRODUCT BIOSYNTHESIS, NON-PROTEINOGENIC AMINO ACID, PROLINE- KEYWDS 2 HOMOLOGUE, SAM-TURNOVER, CATALYSIS, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.KLAUBERT,J.GELLNER,C.BERNARD,J.EFFERT,C.LOMBARD,V.R.I.KAILA, AUTHOR 2 H.B.BODE,Y.LI,M.GROLL REVDAT 3 19-FEB-25 8RYE 1 JRNL REVDAT 2 05-FEB-25 8RYE 1 JRNL REVDAT 1 01-JAN-25 8RYE 0 JRNL AUTH T.J.KLAUBERT,J.GELLNER,C.BERNARD,J.EFFERT,C.LOMBARD, JRNL AUTH 2 V.R.I.KAILA,H.B.BODE,Y.LI,M.GROLL JRNL TITL MOLECULAR BASIS FOR AZETIDINE-2-CARBOXYLIC ACID JRNL TITL 2 BIOSYNTHESIS. JRNL REF NAT COMMUN V. 16 1348 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 39905070 JRNL DOI 10.1038/S41467-025-56610-6 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 76143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5585 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 294 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7344 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 161 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.30000 REMARK 3 B22 (A**2) : 0.44000 REMARK 3 B33 (A**2) : 0.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.372 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.736 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7646 ; 0.004 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7155 ; 0.001 ; 0.014 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10347 ; 1.227 ; 1.648 REMARK 3 BOND ANGLES OTHERS (DEGREES): 16331 ; 1.207 ; 1.585 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 936 ; 6.784 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 470 ;26.138 ;19.426 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1243 ;12.600 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 100 ;15.638 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 966 ; 0.049 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8646 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1914 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3756 ; 2.188 ; 3.469 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3755 ; 2.185 ; 3.468 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4688 ; 3.045 ; 5.201 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4689 ; 3.046 ; 5.202 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3889 ; 2.563 ; 3.964 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3890 ; 2.563 ; 3.965 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5652 ; 3.355 ; 5.790 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8212 ; 4.284 ;41.045 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8167 ; 4.243 ;40.951 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 14799 ; 0.749 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 245 REMARK 3 RESIDUE RANGE : A 301 A 301 REMARK 3 ORIGIN FOR THE GROUP (A): -16.442 17.194 -28.732 REMARK 3 T TENSOR REMARK 3 T11: 0.0430 T22: 0.0401 REMARK 3 T33: 0.0049 T12: 0.0020 REMARK 3 T13: 0.0018 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.0803 L22: 0.0725 REMARK 3 L33: 0.1160 L12: -0.0589 REMARK 3 L13: -0.0568 L23: 0.0615 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: 0.0063 S13: 0.0028 REMARK 3 S21: 0.0045 S22: 0.0002 S23: -0.0004 REMARK 3 S31: -0.0112 S32: 0.0014 S33: -0.0056 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 13 B 245 REMARK 3 RESIDUE RANGE : B 301 B 301 REMARK 3 ORIGIN FOR THE GROUP (A): 9.017 20.872 -17.090 REMARK 3 T TENSOR REMARK 3 T11: 0.0407 T22: 0.0371 REMARK 3 T33: 0.0040 T12: -0.0018 REMARK 3 T13: -0.0046 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.0645 L22: 0.1796 REMARK 3 L33: 0.0787 L12: 0.0288 REMARK 3 L13: -0.0074 L23: -0.0815 REMARK 3 S TENSOR REMARK 3 S11: -0.0057 S12: -0.0015 S13: -0.0019 REMARK 3 S21: -0.0076 S22: -0.0028 S23: -0.0161 REMARK 3 S31: -0.0025 S32: 0.0006 S33: 0.0085 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 13 C 245 REMARK 3 RESIDUE RANGE : C 301 C 301 REMARK 3 ORIGIN FOR THE GROUP (A): 16.254 16.075 18.996 REMARK 3 T TENSOR REMARK 3 T11: 0.0331 T22: 0.0521 REMARK 3 T33: 0.0083 T12: -0.0064 REMARK 3 T13: -0.0011 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.1824 L22: 0.0831 REMARK 3 L33: 0.1831 L12: 0.0822 REMARK 3 L13: 0.1343 L23: 0.0898 REMARK 3 S TENSOR REMARK 3 S11: -0.0017 S12: -0.0289 S13: 0.0188 REMARK 3 S21: -0.0054 S22: -0.0189 S23: -0.0034 REMARK 3 S31: -0.0015 S32: -0.0176 S33: 0.0205 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 13 D 245 REMARK 3 RESIDUE RANGE : D 301 D 301 REMARK 3 ORIGIN FOR THE GROUP (A): -21.423 8.508 30.412 REMARK 3 T TENSOR REMARK 3 T11: 0.0311 T22: 0.0476 REMARK 3 T33: 0.0071 T12: 0.0052 REMARK 3 T13: -0.0013 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 0.1488 L22: 0.1119 REMARK 3 L33: 0.2374 L12: 0.0749 REMARK 3 L13: 0.1123 L23: 0.0847 REMARK 3 S TENSOR REMARK 3 S11: 0.0021 S12: 0.0197 S13: 0.0220 REMARK 3 S21: 0.0133 S22: 0.0017 S23: 0.0119 REMARK 3 S31: -0.0031 S32: 0.0134 S33: -0.0038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8RYE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136502. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80170 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.68800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 2.4 M (NH4)2SO4, PH 7.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 71.32000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 71.32000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -90.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -85.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 ASN A 4 REMARK 465 GLY A 246 REMARK 465 SER A 247 REMARK 465 SER A 248 REMARK 465 ALA A 249 REMARK 465 ALA A 250 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 ASN B 4 REMARK 465 MET B 5 REMARK 465 ASP B 6 REMARK 465 LEU B 7 REMARK 465 THR B 8 REMARK 465 ILE B 9 REMARK 465 GLY B 10 REMARK 465 THR B 11 REMARK 465 HIS B 12 REMARK 465 GLY B 246 REMARK 465 SER B 247 REMARK 465 SER B 248 REMARK 465 ALA B 249 REMARK 465 ALA B 250 REMARK 465 SER C 2 REMARK 465 GLN C 3 REMARK 465 ASN C 4 REMARK 465 MET C 5 REMARK 465 ASP C 6 REMARK 465 LEU C 7 REMARK 465 THR C 8 REMARK 465 ILE C 9 REMARK 465 GLY C 10 REMARK 465 THR C 11 REMARK 465 HIS C 12 REMARK 465 GLY C 246 REMARK 465 SER C 247 REMARK 465 SER C 248 REMARK 465 ALA C 249 REMARK 465 ALA C 250 REMARK 465 SER D 2 REMARK 465 GLN D 3 REMARK 465 ASN D 4 REMARK 465 MET D 5 REMARK 465 ASP D 6 REMARK 465 LEU D 7 REMARK 465 THR D 8 REMARK 465 ILE D 9 REMARK 465 GLY D 10 REMARK 465 THR D 11 REMARK 465 HIS D 12 REMARK 465 GLY D 246 REMARK 465 SER D 247 REMARK 465 SER D 248 REMARK 465 ALA D 249 REMARK 465 ALA D 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 66 -113.00 49.87 REMARK 500 ASP A 199 36.04 -98.03 REMARK 500 ASN A 228 -169.15 -129.87 REMARK 500 TYR B 66 -112.63 49.49 REMARK 500 GLU B 142 77.86 -114.22 REMARK 500 TYR C 66 -112.76 47.67 REMARK 500 GLU C 142 77.31 -119.43 REMARK 500 TYR D 66 -114.72 53.24 REMARK 500 ASP D 199 32.11 -93.83 REMARK 500 REMARK 500 REMARK: NULL DBREF 8RYE A 2 250 UNP Q9HYR0 Q9HYR0_PSEAE 2 250 DBREF 8RYE B 2 250 UNP Q9HYR0 Q9HYR0_PSEAE 2 250 DBREF 8RYE C 2 250 UNP Q9HYR0 Q9HYR0_PSEAE 2 250 DBREF 8RYE D 2 250 UNP Q9HYR0 Q9HYR0_PSEAE 2 250 SEQRES 1 A 249 SER GLN ASN MET ASP LEU THR ILE GLY THR HIS ARG GLU SEQRES 2 A 249 SER ALA PHE TYR GLU LEU GLU PHE GLY PRO ARG THR ILE SEQRES 3 A 249 MET THR LEU ALA ASN PHE PRO ASP ASP VAL LEU PRO LEU SEQRES 4 A 249 LEU GLN MET GLU SER LEU MET THR PHE GLU ALA MET ALA SEQRES 5 A 249 TYR LEU ARG CYS ASP ALA LEU VAL GLU LEU GLY CYS TYR SEQRES 6 A 249 ASP GLY ARG ALA LEU GLU ILE ALA ARG LEU LEU ASN ALA SEQRES 7 A 249 ARG TYR LEU GLY VAL ASP LEU ASP GLN ARG ALA ILE GLU SEQRES 8 A 249 THR LEU ARG THR ARG ILE GLU ARG GLU GLY MET SER ASP SEQRES 9 A 249 ARG ALA ASP THR VAL VAL ASP ASP ILE LEU ASN HIS THR SEQRES 10 A 249 ARG ARG GLY ALA SER VAL GLY SER ARG ALA LEU TYR LEU SEQRES 11 A 249 LEU PRO PHE ASN LEU LEU GLY ASN PHE ARG GLU PRO LYS SEQRES 12 A 249 ARG LEU LEU ASP SER LEU ALA GLU ARG SER VAL ALA ALA SEQRES 13 A 249 VAL VAL SER VAL PHE GLY ASP SER ALA GLU ALA THR ARG SEQRES 14 A 249 VAL ARG GLN SER TYR TYR ARG ARG CYS GLY VAL GLN GLY SEQRES 15 A 249 LEU GLU LEU HIS THR ARG ASP ASP GLY THR VAL PHE THR SEQRES 16 A 249 GLY SER ASP GLY PHE TYR SER ARG SER TYR SER ARG ALA SEQRES 17 A 249 CYS LEU HIS ALA LEU LEU ALA GLU CYS GLY LEU THR VAL SEQRES 18 A 249 VAL ARG SER ALA SER ASN LEU PHE ALA HIS CYS VAL THR SEQRES 19 A 249 VAL LEU PRO GLU GLY ALA ASP GLN GLY PHE GLY SER SER SEQRES 20 A 249 ALA ALA SEQRES 1 B 249 SER GLN ASN MET ASP LEU THR ILE GLY THR HIS ARG GLU SEQRES 2 B 249 SER ALA PHE TYR GLU LEU GLU PHE GLY PRO ARG THR ILE SEQRES 3 B 249 MET THR LEU ALA ASN PHE PRO ASP ASP VAL LEU PRO LEU SEQRES 4 B 249 LEU GLN MET GLU SER LEU MET THR PHE GLU ALA MET ALA SEQRES 5 B 249 TYR LEU ARG CYS ASP ALA LEU VAL GLU LEU GLY CYS TYR SEQRES 6 B 249 ASP GLY ARG ALA LEU GLU ILE ALA ARG LEU LEU ASN ALA SEQRES 7 B 249 ARG TYR LEU GLY VAL ASP LEU ASP GLN ARG ALA ILE GLU SEQRES 8 B 249 THR LEU ARG THR ARG ILE GLU ARG GLU GLY MET SER ASP SEQRES 9 B 249 ARG ALA ASP THR VAL VAL ASP ASP ILE LEU ASN HIS THR SEQRES 10 B 249 ARG ARG GLY ALA SER VAL GLY SER ARG ALA LEU TYR LEU SEQRES 11 B 249 LEU PRO PHE ASN LEU LEU GLY ASN PHE ARG GLU PRO LYS SEQRES 12 B 249 ARG LEU LEU ASP SER LEU ALA GLU ARG SER VAL ALA ALA SEQRES 13 B 249 VAL VAL SER VAL PHE GLY ASP SER ALA GLU ALA THR ARG SEQRES 14 B 249 VAL ARG GLN SER TYR TYR ARG ARG CYS GLY VAL GLN GLY SEQRES 15 B 249 LEU GLU LEU HIS THR ARG ASP ASP GLY THR VAL PHE THR SEQRES 16 B 249 GLY SER ASP GLY PHE TYR SER ARG SER TYR SER ARG ALA SEQRES 17 B 249 CYS LEU HIS ALA LEU LEU ALA GLU CYS GLY LEU THR VAL SEQRES 18 B 249 VAL ARG SER ALA SER ASN LEU PHE ALA HIS CYS VAL THR SEQRES 19 B 249 VAL LEU PRO GLU GLY ALA ASP GLN GLY PHE GLY SER SER SEQRES 20 B 249 ALA ALA SEQRES 1 C 249 SER GLN ASN MET ASP LEU THR ILE GLY THR HIS ARG GLU SEQRES 2 C 249 SER ALA PHE TYR GLU LEU GLU PHE GLY PRO ARG THR ILE SEQRES 3 C 249 MET THR LEU ALA ASN PHE PRO ASP ASP VAL LEU PRO LEU SEQRES 4 C 249 LEU GLN MET GLU SER LEU MET THR PHE GLU ALA MET ALA SEQRES 5 C 249 TYR LEU ARG CYS ASP ALA LEU VAL GLU LEU GLY CYS TYR SEQRES 6 C 249 ASP GLY ARG ALA LEU GLU ILE ALA ARG LEU LEU ASN ALA SEQRES 7 C 249 ARG TYR LEU GLY VAL ASP LEU ASP GLN ARG ALA ILE GLU SEQRES 8 C 249 THR LEU ARG THR ARG ILE GLU ARG GLU GLY MET SER ASP SEQRES 9 C 249 ARG ALA ASP THR VAL VAL ASP ASP ILE LEU ASN HIS THR SEQRES 10 C 249 ARG ARG GLY ALA SER VAL GLY SER ARG ALA LEU TYR LEU SEQRES 11 C 249 LEU PRO PHE ASN LEU LEU GLY ASN PHE ARG GLU PRO LYS SEQRES 12 C 249 ARG LEU LEU ASP SER LEU ALA GLU ARG SER VAL ALA ALA SEQRES 13 C 249 VAL VAL SER VAL PHE GLY ASP SER ALA GLU ALA THR ARG SEQRES 14 C 249 VAL ARG GLN SER TYR TYR ARG ARG CYS GLY VAL GLN GLY SEQRES 15 C 249 LEU GLU LEU HIS THR ARG ASP ASP GLY THR VAL PHE THR SEQRES 16 C 249 GLY SER ASP GLY PHE TYR SER ARG SER TYR SER ARG ALA SEQRES 17 C 249 CYS LEU HIS ALA LEU LEU ALA GLU CYS GLY LEU THR VAL SEQRES 18 C 249 VAL ARG SER ALA SER ASN LEU PHE ALA HIS CYS VAL THR SEQRES 19 C 249 VAL LEU PRO GLU GLY ALA ASP GLN GLY PHE GLY SER SER SEQRES 20 C 249 ALA ALA SEQRES 1 D 249 SER GLN ASN MET ASP LEU THR ILE GLY THR HIS ARG GLU SEQRES 2 D 249 SER ALA PHE TYR GLU LEU GLU PHE GLY PRO ARG THR ILE SEQRES 3 D 249 MET THR LEU ALA ASN PHE PRO ASP ASP VAL LEU PRO LEU SEQRES 4 D 249 LEU GLN MET GLU SER LEU MET THR PHE GLU ALA MET ALA SEQRES 5 D 249 TYR LEU ARG CYS ASP ALA LEU VAL GLU LEU GLY CYS TYR SEQRES 6 D 249 ASP GLY ARG ALA LEU GLU ILE ALA ARG LEU LEU ASN ALA SEQRES 7 D 249 ARG TYR LEU GLY VAL ASP LEU ASP GLN ARG ALA ILE GLU SEQRES 8 D 249 THR LEU ARG THR ARG ILE GLU ARG GLU GLY MET SER ASP SEQRES 9 D 249 ARG ALA ASP THR VAL VAL ASP ASP ILE LEU ASN HIS THR SEQRES 10 D 249 ARG ARG GLY ALA SER VAL GLY SER ARG ALA LEU TYR LEU SEQRES 11 D 249 LEU PRO PHE ASN LEU LEU GLY ASN PHE ARG GLU PRO LYS SEQRES 12 D 249 ARG LEU LEU ASP SER LEU ALA GLU ARG SER VAL ALA ALA SEQRES 13 D 249 VAL VAL SER VAL PHE GLY ASP SER ALA GLU ALA THR ARG SEQRES 14 D 249 VAL ARG GLN SER TYR TYR ARG ARG CYS GLY VAL GLN GLY SEQRES 15 D 249 LEU GLU LEU HIS THR ARG ASP ASP GLY THR VAL PHE THR SEQRES 16 D 249 GLY SER ASP GLY PHE TYR SER ARG SER TYR SER ARG ALA SEQRES 17 D 249 CYS LEU HIS ALA LEU LEU ALA GLU CYS GLY LEU THR VAL SEQRES 18 D 249 VAL ARG SER ALA SER ASN LEU PHE ALA HIS CYS VAL THR SEQRES 19 D 249 VAL LEU PRO GLU GLY ALA ASP GLN GLY PHE GLY SER SER SEQRES 20 D 249 ALA ALA HET MTA A 301 20 HET 02A A 302 7 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET EDO A 306 4 HET EDO A 307 4 HET MTA B 301 20 HET 02A B 302 7 HET SO4 B 303 5 HET SO4 B 304 5 HET MTA C 301 20 HET 02A C 302 7 HET SO4 C 303 5 HET SO4 C 304 5 HET MTA D 301 20 HET 02A D 302 7 HET SO4 D 303 5 HET SO4 D 304 5 HETNAM MTA 5'-DEOXY-5'-METHYLTHIOADENOSINE HETNAM 02A (2S)-AZETIDINE-2-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 5 MTA 4(C11 H15 N5 O3 S) FORMUL 6 02A 4(C4 H7 N O2) FORMUL 7 SO4 9(O4 S 2-) FORMUL 10 EDO 2(C2 H6 O2) FORMUL 24 HOH *249(H2 O) HELIX 1 AA1 ALA A 16 LEU A 20 5 5 HELIX 2 AA2 PHE A 22 THR A 29 1 8 HELIX 3 AA3 LEU A 30 PHE A 33 5 4 HELIX 4 AA4 PRO A 34 ASP A 36 5 3 HELIX 5 AA5 VAL A 37 ARG A 56 1 20 HELIX 6 AA6 ALA A 70 LEU A 77 1 8 HELIX 7 AA7 ASP A 87 GLU A 101 1 15 HELIX 8 AA8 ASP A 113 GLY A 121 1 9 HELIX 9 AA9 ASN A 135 PHE A 140 5 6 HELIX 10 AB1 PRO A 143 LEU A 150 1 8 HELIX 11 AB2 ALA A 151 SER A 154 5 4 HELIX 12 AB3 SER A 165 CYS A 179 1 15 HELIX 13 AB4 SER A 207 CYS A 218 1 12 HELIX 14 AB5 SER B 15 LEU B 20 1 6 HELIX 15 AB6 PHE B 22 THR B 29 1 8 HELIX 16 AB7 LEU B 30 PHE B 33 5 4 HELIX 17 AB8 PRO B 34 ASP B 36 5 3 HELIX 18 AB9 VAL B 37 LEU B 55 1 19 HELIX 19 AC1 ALA B 70 ASN B 78 1 9 HELIX 20 AC2 ASP B 87 GLU B 101 1 15 HELIX 21 AC3 ASP B 113 GLY B 121 1 9 HELIX 22 AC4 LEU B 136 PHE B 140 5 5 HELIX 23 AC5 PRO B 143 LEU B 150 1 8 HELIX 24 AC6 ALA B 151 SER B 154 5 4 HELIX 25 AC7 SER B 165 CYS B 179 1 15 HELIX 26 AC8 SER B 207 CYS B 218 1 12 HELIX 27 AC9 ALA C 16 LEU C 20 5 5 HELIX 28 AD1 PHE C 22 THR C 29 1 8 HELIX 29 AD2 LEU C 30 PHE C 33 5 4 HELIX 30 AD3 PRO C 34 ASP C 36 5 3 HELIX 31 AD4 VAL C 37 LEU C 55 1 19 HELIX 32 AD5 ALA C 70 ASN C 78 1 9 HELIX 33 AD6 ASP C 87 GLU C 101 1 15 HELIX 34 AD7 ASP C 113 GLY C 121 1 9 HELIX 35 AD8 ASN C 135 PHE C 140 5 6 HELIX 36 AD9 PRO C 143 SER C 149 1 7 HELIX 37 AE1 LEU C 150 SER C 154 5 5 HELIX 38 AE2 SER C 165 GLY C 180 1 16 HELIX 39 AE3 SER C 207 CYS C 218 1 12 HELIX 40 AE4 ALA D 16 LEU D 20 5 5 HELIX 41 AE5 PHE D 22 THR D 29 1 8 HELIX 42 AE6 LEU D 30 PHE D 33 5 4 HELIX 43 AE7 PRO D 34 ASP D 36 5 3 HELIX 44 AE8 VAL D 37 LEU D 55 1 19 HELIX 45 AE9 ALA D 70 LEU D 77 1 8 HELIX 46 AF1 ASP D 87 GLU D 101 1 15 HELIX 47 AF2 ASP D 113 GLY D 121 1 9 HELIX 48 AF3 ASN D 135 PHE D 140 5 6 HELIX 49 AF4 PRO D 143 LEU D 150 1 8 HELIX 50 AF5 ALA D 151 SER D 154 5 4 HELIX 51 AF6 SER D 165 CYS D 179 1 15 HELIX 52 AF7 SER D 207 CYS D 218 1 12 SHEET 1 AA1 7 ALA A 107 VAL A 111 0 SHEET 2 AA1 7 ARG A 80 ASP A 85 1 N TYR A 81 O ASP A 108 SHEET 3 AA1 7 ALA A 59 LEU A 63 1 N GLU A 62 O LEU A 82 SHEET 4 AA1 7 ALA A 128 LEU A 132 1 O LEU A 131 N VAL A 61 SHEET 5 AA1 7 ALA A 156 PHE A 162 1 O VAL A 158 N LEU A 132 SHEET 6 AA1 7 ALA A 231 PRO A 238 -1 O VAL A 236 N ALA A 157 SHEET 7 AA1 7 LEU A 220 SER A 227 -1 N THR A 221 O LEU A 237 SHEET 1 AA2 3 GLU A 185 HIS A 187 0 SHEET 2 AA2 3 VAL A 194 THR A 196 -1 O VAL A 194 N HIS A 187 SHEET 3 AA2 3 TYR A 202 ARG A 204 -1 O SER A 203 N PHE A 195 SHEET 1 AA3 7 ALA B 107 VAL B 111 0 SHEET 2 AA3 7 ARG B 80 ASP B 85 1 N TYR B 81 O ASP B 108 SHEET 3 AA3 7 ALA B 59 LEU B 63 1 N GLU B 62 O LEU B 82 SHEET 4 AA3 7 ALA B 128 LEU B 132 1 O LEU B 129 N VAL B 61 SHEET 5 AA3 7 ALA B 156 PHE B 162 1 O VAL B 158 N LEU B 132 SHEET 6 AA3 7 ALA B 231 PRO B 238 -1 O HIS B 232 N VAL B 161 SHEET 7 AA3 7 LEU B 220 SER B 227 -1 N ALA B 226 O CYS B 233 SHEET 1 AA4 3 GLU B 185 THR B 188 0 SHEET 2 AA4 3 THR B 193 THR B 196 -1 O VAL B 194 N HIS B 187 SHEET 3 AA4 3 TYR B 202 ARG B 204 -1 O SER B 203 N PHE B 195 SHEET 1 AA5 7 ALA C 107 VAL C 111 0 SHEET 2 AA5 7 ARG C 80 ASP C 85 1 N TYR C 81 O ASP C 108 SHEET 3 AA5 7 ALA C 59 LEU C 63 1 N GLU C 62 O VAL C 84 SHEET 4 AA5 7 ALA C 128 LEU C 132 1 O LEU C 129 N VAL C 61 SHEET 5 AA5 7 ALA C 156 PHE C 162 1 O VAL C 158 N LEU C 132 SHEET 6 AA5 7 ALA C 231 PRO C 238 -1 O HIS C 232 N VAL C 161 SHEET 7 AA5 7 LEU C 220 SER C 227 -1 N ALA C 226 O CYS C 233 SHEET 1 AA6 3 GLU C 185 ARG C 189 0 SHEET 2 AA6 3 GLY C 192 THR C 196 -1 O VAL C 194 N HIS C 187 SHEET 3 AA6 3 TYR C 202 ARG C 204 -1 O SER C 203 N PHE C 195 SHEET 1 AA7 7 ALA D 107 VAL D 111 0 SHEET 2 AA7 7 ARG D 80 ASP D 85 1 N GLY D 83 O VAL D 110 SHEET 3 AA7 7 ALA D 59 LEU D 63 1 N LEU D 60 O ARG D 80 SHEET 4 AA7 7 ALA D 128 LEU D 132 1 O LEU D 131 N VAL D 61 SHEET 5 AA7 7 ALA D 156 PHE D 162 1 O VAL D 158 N LEU D 132 SHEET 6 AA7 7 ALA D 231 PRO D 238 -1 O HIS D 232 N VAL D 161 SHEET 7 AA7 7 LEU D 220 SER D 227 -1 N ALA D 226 O CYS D 233 SHEET 1 AA8 3 GLU D 185 ARG D 189 0 SHEET 2 AA8 3 GLY D 192 THR D 196 -1 O VAL D 194 N HIS D 187 SHEET 3 AA8 3 TYR D 202 ARG D 204 -1 O SER D 203 N PHE D 195 CRYST1 142.640 82.150 94.670 90.00 90.00 90.00 P 21 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007011 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010563 0.00000