HEADER IMMUNE SYSTEM 09-FEB-24 8RYO TITLE STRUCTURE OF S2-198 TCR IN COMPLEX WITH HLA-A*03:01 BOUND TO ELFSYLIEK TITLE 2 PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A ALPHA CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HUMAN LEUKOCYTE ANTIGEN A,HLA-A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: BETA-2-MICROGLOBULIN; COMPND 8 CHAIN: B; COMPND 9 FRAGMENT: UNP RESIDUES 21-119; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ELFSYLIEK PEPTIDE; COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: TCR ALPHA; COMPND 17 CHAIN: D; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 5; COMPND 20 MOLECULE: TCR BETA; COMPND 21 CHAIN: E; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HLA-A, HLAA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: B2M, CDABP0092, HDCMA22P; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 MOL_ID: 4; SOURCE 20 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 21 ORGANISM_TAXID: 9606; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 MOL_ID: 5; SOURCE 25 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 26 ORGANISM_TAXID: 9606; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 28 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TCR, HLA, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.KARUPPIAH REVDAT 1 04-SEP-24 8RYO 0 JRNL AUTH V.KARUPPIAH JRNL TITL STRUCTURE OF S2-198 TCR IN COMPLEX WITH HLA-A*03:01 BOUND TO JRNL TITL 2 ELFSYLIEK PEPTIDE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 68.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 57579 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2973 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4178 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6478 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 249 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.24000 REMARK 3 B22 (A**2) : -2.35000 REMARK 3 B33 (A**2) : 1.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.02000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.216 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.169 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.448 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6673 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6008 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9057 ; 1.183 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13841 ; 1.075 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 804 ; 6.563 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 391 ;29.477 ;22.123 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1078 ;12.927 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;14.488 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 842 ; 0.037 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7647 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1633 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3231 ; 0.839 ; 2.195 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3230 ; 0.839 ; 2.195 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4027 ; 1.444 ; 3.287 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4028 ; 1.444 ; 3.287 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3442 ; 0.896 ; 2.310 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3436 ; 0.885 ; 2.303 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5023 ; 1.475 ; 3.406 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6943 ; 4.235 ;24.503 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6900 ; 4.192 ;24.256 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1320 7.6500 5.8090 REMARK 3 T TENSOR REMARK 3 T11: 0.2466 T22: 0.1922 REMARK 3 T33: 0.0350 T12: 0.0229 REMARK 3 T13: 0.0818 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.5389 L22: 1.0565 REMARK 3 L33: 2.4526 L12: -0.0525 REMARK 3 L13: -0.7524 L23: -0.2175 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: 0.2458 S13: -0.0431 REMARK 3 S21: -0.1774 S22: 0.0023 S23: 0.0156 REMARK 3 S31: -0.0287 S32: -0.2506 S33: -0.0106 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 99 REMARK 3 ORIGIN FOR THE GROUP (A): 27.7570 -4.6260 -0.2690 REMARK 3 T TENSOR REMARK 3 T11: 0.1978 T22: 0.1036 REMARK 3 T33: 0.0718 T12: 0.0028 REMARK 3 T13: 0.0570 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 5.0948 L22: 2.6557 REMARK 3 L33: 3.5577 L12: -0.6060 REMARK 3 L13: -2.9259 L23: 0.2494 REMARK 3 S TENSOR REMARK 3 S11: 0.0278 S12: 0.0439 S13: 0.0166 REMARK 3 S21: 0.0037 S22: 0.0372 S23: -0.3651 REMARK 3 S31: 0.0187 S32: 0.1235 S33: -0.0650 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 9 REMARK 3 ORIGIN FOR THE GROUP (A): 8.9380 9.5610 24.8290 REMARK 3 T TENSOR REMARK 3 T11: 0.1427 T22: 0.1639 REMARK 3 T33: 0.0326 T12: 0.0659 REMARK 3 T13: 0.0523 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.0098 L22: 3.5301 REMARK 3 L33: 6.1832 L12: 0.0337 REMARK 3 L13: -2.8610 L23: -1.3882 REMARK 3 S TENSOR REMARK 3 S11: 0.0230 S12: -0.1335 S13: 0.0979 REMARK 3 S21: -0.0633 S22: 0.0577 S23: 0.0641 REMARK 3 S31: -0.0674 S32: -0.0380 S33: -0.0807 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 3 D 189 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6720 26.0580 59.2430 REMARK 3 T TENSOR REMARK 3 T11: 0.4267 T22: 0.4328 REMARK 3 T33: 0.1253 T12: 0.0291 REMARK 3 T13: 0.1115 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 0.1482 L22: 1.1370 REMARK 3 L33: 4.5594 L12: 0.2264 REMARK 3 L13: 0.2088 L23: 1.8748 REMARK 3 S TENSOR REMARK 3 S11: 0.1092 S12: -0.1813 S13: 0.0173 REMARK 3 S21: -0.0362 S22: -0.0681 S23: -0.1400 REMARK 3 S31: -0.4130 S32: 0.0358 S33: -0.0412 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 3 E 245 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5280 10.3130 64.3380 REMARK 3 T TENSOR REMARK 3 T11: 0.3534 T22: 0.4708 REMARK 3 T33: 0.1036 T12: 0.0752 REMARK 3 T13: 0.0690 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 0.0546 L22: 0.6817 REMARK 3 L33: 3.7351 L12: -0.1113 REMARK 3 L13: -0.3302 L23: 1.4224 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.1293 S13: 0.0285 REMARK 3 S21: 0.2056 S22: 0.1607 S23: -0.1487 REMARK 3 S31: 0.4293 S32: 0.5257 S33: -0.1704 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.00 REMARK 3 ION PROBE RADIUS : 0.70 REMARK 3 SHRINKAGE RADIUS : 0.70 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8RYO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : DIALS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60565 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 68.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 1.13100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MOPS PH 6.7, 14 % W/V PEG 8000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.42700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: PENTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: PENTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 276 REMARK 465 MET B 0 REMARK 465 MET D 1 REMARK 465 ALA D 2 REMARK 465 SER D 149 REMARK 465 LYS D 150 REMARK 465 LYS D 180 REMARK 465 SER D 181 REMARK 465 ASN D 190 REMARK 465 ASN D 191 REMARK 465 SER D 192 REMARK 465 ILE D 193 REMARK 465 ILE D 194 REMARK 465 PRO D 195 REMARK 465 GLU D 196 REMARK 465 ASP D 197 REMARK 465 THR D 198 REMARK 465 MET E 1 REMARK 465 ASN E 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 -121.75 57.49 REMARK 500 TYR A 123 -69.63 -106.40 REMARK 500 PRO A 210 -168.54 -77.19 REMARK 500 ASP A 220 -5.95 67.74 REMARK 500 TRP B 60 -6.72 84.44 REMARK 500 ALA D 80 65.70 35.09 REMARK 500 ALA D 87 175.69 177.95 REMARK 500 MET D 99 -171.84 60.67 REMARK 500 ASP D 118 58.21 -146.20 REMARK 500 PHE D 169 60.27 39.25 REMARK 500 ARG E 69 68.69 -150.83 REMARK 500 HIS E 168 -40.21 -134.45 REMARK 500 ASP E 204 115.32 -160.08 REMARK 500 REMARK 500 REMARK: NULL DBREF 8RYO A 1 275 UNP P04439 HLAA_HUMAN 25 299 DBREF 8RYO B 1 99 UNP P61769 B2MG_HUMAN 21 119 DBREF 8RYO C 1 9 PDB 8RYO 8RYO 1 9 DBREF 8RYO D 1 198 PDB 8RYO 8RYO 1 198 DBREF 8RYO E 1 245 PDB 8RYO 8RYO 1 245 SEQADV 8RYO PRO A 276 UNP P04439 EXPRESSION TAG SEQADV 8RYO MET B 0 UNP P61769 INITIATING METHIONINE SEQRES 1 A 276 GLY SER HIS SER MET ARG TYR PHE PHE THR SER VAL SER SEQRES 2 A 276 ARG PRO GLY ARG GLY GLU PRO ARG PHE ILE ALA VAL GLY SEQRES 3 A 276 TYR VAL ASP ASP THR GLN PHE VAL ARG PHE ASP SER ASP SEQRES 4 A 276 ALA ALA SER GLN ARG MET GLU PRO ARG ALA PRO TRP ILE SEQRES 5 A 276 GLU GLN GLU GLY PRO GLU TYR TRP ASP GLN GLU THR ARG SEQRES 6 A 276 ASN VAL LYS ALA GLN SER GLN THR ASP ARG VAL ASP LEU SEQRES 7 A 276 GLY THR LEU ARG GLY TYR TYR ASN GLN SER GLU ALA GLY SEQRES 8 A 276 SER HIS THR ILE GLN ILE MET TYR GLY CYS ASP VAL GLY SEQRES 9 A 276 SER ASP GLY ARG PHE LEU ARG GLY TYR ARG GLN ASP ALA SEQRES 10 A 276 TYR ASP GLY LYS ASP TYR ILE ALA LEU ASN GLU ASP LEU SEQRES 11 A 276 ARG SER TRP THR ALA ALA ASP MET ALA ALA GLN ILE THR SEQRES 12 A 276 LYS ARG LYS TRP GLU ALA ALA HIS GLU ALA GLU GLN LEU SEQRES 13 A 276 ARG ALA TYR LEU ASP GLY THR CYS VAL GLU TRP LEU ARG SEQRES 14 A 276 ARG TYR LEU GLU ASN GLY LYS GLU THR LEU GLN ARG THR SEQRES 15 A 276 ASP PRO PRO LYS THR HIS MET THR HIS HIS PRO ILE SER SEQRES 16 A 276 ASP HIS GLU ALA THR LEU ARG CYS TRP ALA LEU GLY PHE SEQRES 17 A 276 TYR PRO ALA GLU ILE THR LEU THR TRP GLN ARG ASP GLY SEQRES 18 A 276 GLU ASP GLN THR GLN ASP THR GLU LEU VAL GLU THR ARG SEQRES 19 A 276 PRO ALA GLY ASP GLY THR PHE GLN LYS TRP ALA ALA VAL SEQRES 20 A 276 VAL VAL PRO SER GLY GLU GLU GLN ARG TYR THR CYS HIS SEQRES 21 A 276 VAL GLN HIS GLU GLY LEU PRO LYS PRO LEU THR LEU ARG SEQRES 22 A 276 TRP GLU PRO SEQRES 1 B 100 MET ILE GLN ARG THR PRO LYS ILE GLN VAL TYR SER ARG SEQRES 2 B 100 HIS PRO ALA GLU ASN GLY LYS SER ASN PHE LEU ASN CYS SEQRES 3 B 100 TYR VAL SER GLY PHE HIS PRO SER ASP ILE GLU VAL ASP SEQRES 4 B 100 LEU LEU LYS ASN GLY GLU ARG ILE GLU LYS VAL GLU HIS SEQRES 5 B 100 SER ASP LEU SER PHE SER LYS ASP TRP SER PHE TYR LEU SEQRES 6 B 100 LEU TYR TYR THR GLU PHE THR PRO THR GLU LYS ASP GLU SEQRES 7 B 100 TYR ALA CYS ARG VAL ASN HIS VAL THR LEU SER GLN PRO SEQRES 8 B 100 LYS ILE VAL LYS TRP ASP ARG ASP MET SEQRES 1 C 9 GLU LEU PHE SER TYR LEU ILE GLU LYS SEQRES 1 D 198 MET ALA GLN GLU VAL THR GLN ILE PRO ALA ALA LEU SER SEQRES 2 D 198 VAL PRO GLU GLY GLU ASN LEU VAL LEU ASN CYS SER PHE SEQRES 3 D 198 THR LEU ARG TRP ILE TYR ASN LEU GLN TRP PHE ARG GLN SEQRES 4 D 198 ASP PRO GLY LYS GLY LEU THR SER LEU LEU LEU ILE GLN SEQRES 5 D 198 SER SER GLN ARG GLU GLN THR SER GLY ARG LEU ASN ALA SEQRES 6 D 198 SER LEU ASP LYS SER SER GLY ARG SER THR LEU TYR ILE SEQRES 7 D 198 ALA ALA SER GLN PRO GLY ASP SER ALA THR TYR LEU CYS SEQRES 8 D 198 ALA VAL ASN ASN ALA GLY ASN MET LEU THR PHE GLY GLY SEQRES 9 D 198 GLY THR ARG LEU MET VAL LYS PRO HIS ILE GLN ASN PRO SEQRES 10 D 198 ASP PRO ALA VAL TYR GLN LEU ARG ASP SER LYS SER SER SEQRES 11 D 198 ASP LYS SER VAL CYS LEU PHE THR ASP PHE ASP SER GLN SEQRES 12 D 198 THR ASN VAL SER GLN SER LYS ASP SER ASP VAL TYR ILE SEQRES 13 D 198 THR ASP LYS CYS VAL LEU ASP MET ARG SER MET ASP PHE SEQRES 14 D 198 LYS SER ASN SER ALA VAL ALA TRP SER ASN LYS SER ASP SEQRES 15 D 198 PHE ALA CYS ALA ASN ALA PHE ASN ASN SER ILE ILE PRO SEQRES 16 D 198 GLU ASP THR SEQRES 1 E 245 MET ASN ALA GLY VAL THR GLN THR PRO LYS PHE ARG ILE SEQRES 2 E 245 LEU LYS ILE GLY GLN SER MET THR LEU GLN CYS THR GLN SEQRES 3 E 245 ASP MET ASN HIS ASN TYR MET TYR TRP TYR ARG GLN ASP SEQRES 4 E 245 PRO GLY MET GLY LEU LYS LEU ILE TYR TYR SER VAL GLY SEQRES 5 E 245 ALA GLY ILE THR ASP LYS GLY GLU VAL PRO ASN GLY TYR SEQRES 6 E 245 ASN VAL SER ARG SER THR THR GLU ASP PHE PRO LEU ARG SEQRES 7 E 245 LEU GLU SER ALA ALA PRO SER GLN THR SER VAL TYR PHE SEQRES 8 E 245 CYS ALA SER SER GLU THR ARG GLY ALA PRO TYR GLY TYR SEQRES 9 E 245 THR PHE GLY SER GLY THR ARG LEU THR VAL VAL GLU ASP SEQRES 10 E 245 LEU ASN LYS VAL PHE PRO PRO GLU VAL ALA VAL PHE GLU SEQRES 11 E 245 PRO SER GLU ALA GLU ILE SER HIS THR GLN LYS ALA THR SEQRES 12 E 245 LEU VAL CYS LEU ALA THR GLY PHE TYR PRO ASP HIS VAL SEQRES 13 E 245 GLU LEU SER TRP TRP VAL ASN GLY LYS GLU VAL HIS SER SEQRES 14 E 245 GLY VAL CYS THR ASP PRO GLN PRO LEU LYS GLU GLN PRO SEQRES 15 E 245 ALA LEU ASN ASP SER ARG TYR ALA LEU SER SER ARG LEU SEQRES 16 E 245 ARG VAL SER ALA THR PHE TRP GLN ASP PRO ARG ASN HIS SEQRES 17 E 245 PHE ARG CYS GLN VAL GLN PHE TYR GLY LEU SER GLU ASN SEQRES 18 E 245 ASP GLU TRP THR GLN ASP ARG ALA LYS PRO VAL THR GLN SEQRES 19 E 245 ILE VAL SER ALA GLU ALA TRP GLY ARG ALA ASP HET TOE A 301 11 HET EDO B 301 4 HET PO4 B 302 5 HET EDO D 201 4 HETNAM TOE 2-[2-(2-METHOXY-ETHOXY)-ETHOXY]-ETHOXYL HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 6 TOE C7 H16 O4 FORMUL 7 EDO 2(C2 H6 O2) FORMUL 8 PO4 O4 P 3- FORMUL 10 HOH *249(H2 O) HELIX 1 AA1 ALA A 49 GLU A 53 5 5 HELIX 2 AA2 GLY A 56 TYR A 85 1 30 HELIX 3 AA3 ASP A 137 ALA A 150 1 14 HELIX 4 AA4 HIS A 151 GLY A 162 1 12 HELIX 5 AA5 GLY A 162 GLY A 175 1 14 HELIX 6 AA6 GLY A 175 GLN A 180 1 6 HELIX 7 AA7 THR A 225 THR A 228 5 4 HELIX 8 AA8 GLN D 82 SER D 86 5 5 HELIX 9 AA9 ALA D 184 PHE D 189 1 6 HELIX 10 AB1 ALA E 83 THR E 87 5 5 HELIX 11 AB2 ASP E 117 VAL E 121 5 5 HELIX 12 AB3 SER E 132 GLN E 140 1 9 HELIX 13 AB4 ALA E 199 GLN E 203 1 5 SHEET 1 AA1 8 GLU A 46 PRO A 47 0 SHEET 2 AA1 8 THR A 31 ASP A 37 -1 N ARG A 35 O GLU A 46 SHEET 3 AA1 8 ARG A 21 VAL A 28 -1 N ALA A 24 O PHE A 36 SHEET 4 AA1 8 HIS A 3 VAL A 12 -1 N ARG A 6 O TYR A 27 SHEET 5 AA1 8 THR A 94 VAL A 103 -1 O ILE A 95 N SER A 11 SHEET 6 AA1 8 PHE A 109 TYR A 118 -1 O LEU A 110 N ASP A 102 SHEET 7 AA1 8 LYS A 121 LEU A 126 -1 O ILE A 124 N ASP A 116 SHEET 8 AA1 8 TRP A 133 ALA A 135 -1 O THR A 134 N ALA A 125 SHEET 1 AA2 4 LYS A 186 PRO A 193 0 SHEET 2 AA2 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA2 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA2 4 GLU A 229 LEU A 230 -1 N GLU A 229 O ALA A 246 SHEET 1 AA3 4 LYS A 186 PRO A 193 0 SHEET 2 AA3 4 GLU A 198 PHE A 208 -1 O TRP A 204 N HIS A 188 SHEET 3 AA3 4 PHE A 241 PRO A 250 -1 O ALA A 245 N CYS A 203 SHEET 4 AA3 4 ARG A 234 PRO A 235 -1 N ARG A 234 O GLN A 242 SHEET 1 AA4 4 GLU A 222 ASP A 223 0 SHEET 2 AA4 4 THR A 214 ARG A 219 -1 N ARG A 219 O GLU A 222 SHEET 3 AA4 4 TYR A 257 GLN A 262 -1 O HIS A 260 N THR A 216 SHEET 4 AA4 4 LEU A 270 LEU A 272 -1 O LEU A 272 N CYS A 259 SHEET 1 AA5 4 LYS B 6 SER B 11 0 SHEET 2 AA5 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA5 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA5 4 GLU B 50 HIS B 51 -1 N GLU B 50 O TYR B 67 SHEET 1 AA6 4 LYS B 6 SER B 11 0 SHEET 2 AA6 4 ASN B 21 PHE B 30 -1 O SER B 28 N LYS B 6 SHEET 3 AA6 4 PHE B 62 PHE B 70 -1 O TYR B 66 N CYS B 25 SHEET 4 AA6 4 SER B 55 PHE B 56 -1 N SER B 55 O TYR B 63 SHEET 1 AA7 4 GLU B 44 ARG B 45 0 SHEET 2 AA7 4 GLU B 36 LYS B 41 -1 N LYS B 41 O GLU B 44 SHEET 3 AA7 4 TYR B 78 ASN B 83 -1 O ALA B 79 N LEU B 40 SHEET 4 AA7 4 LYS B 91 LYS B 94 -1 O LYS B 91 N VAL B 82 SHEET 1 AA8 5 VAL D 5 THR D 6 0 SHEET 2 AA8 5 LEU D 20 PHE D 26 -1 O SER D 25 N THR D 6 SHEET 3 AA8 5 ARG D 73 ILE D 78 -1 O SER D 74 N CYS D 24 SHEET 4 AA8 5 LEU D 63 ASP D 68 -1 N ASN D 64 O TYR D 77 SHEET 5 AA8 5 GLU D 57 SER D 60 -1 N SER D 60 O LEU D 63 SHEET 1 AA9 5 ALA D 11 PRO D 15 0 SHEET 2 AA9 5 THR D 106 LYS D 111 1 O MET D 109 N LEU D 12 SHEET 3 AA9 5 ALA D 87 ASN D 94 -1 N ALA D 87 O LEU D 108 SHEET 4 AA9 5 ASN D 33 GLN D 39 -1 N GLN D 35 O ALA D 92 SHEET 5 AA9 5 THR D 46 GLN D 52 -1 O THR D 46 N ARG D 38 SHEET 1 AB1 4 ALA D 11 PRO D 15 0 SHEET 2 AB1 4 THR D 106 LYS D 111 1 O MET D 109 N LEU D 12 SHEET 3 AB1 4 ALA D 87 ASN D 94 -1 N ALA D 87 O LEU D 108 SHEET 4 AB1 4 THR D 101 PHE D 102 -1 O THR D 101 N VAL D 93 SHEET 1 AB2 4 ALA D 120 ARG D 125 0 SHEET 2 AB2 4 SER D 133 THR D 138 -1 O LEU D 136 N TYR D 122 SHEET 3 AB2 4 SER D 173 SER D 178 -1 O ALA D 176 N CYS D 135 SHEET 4 AB2 4 VAL D 154 ILE D 156 -1 N TYR D 155 O TRP D 177 SHEET 1 AB3 5 VAL D 161 LEU D 162 0 SHEET 2 AB3 5 VAL E 171 THR E 173 -1 O THR E 173 N VAL D 161 SHEET 3 AB3 5 TYR E 189 SER E 198 -1 O ARG E 194 N CYS E 172 SHEET 4 AB3 5 LYS E 141 PHE E 151 -1 N ALA E 142 O VAL E 197 SHEET 5 AB3 5 GLU E 125 PHE E 129 -1 N PHE E 129 O VAL E 145 SHEET 1 AB4 4 VAL D 161 LEU D 162 0 SHEET 2 AB4 4 VAL E 171 THR E 173 -1 O THR E 173 N VAL D 161 SHEET 3 AB4 4 TYR E 189 SER E 198 -1 O ARG E 194 N CYS E 172 SHEET 4 AB4 4 LEU E 178 LYS E 179 -1 N LEU E 178 O ALA E 190 SHEET 1 AB5 4 VAL E 5 THR E 8 0 SHEET 2 AB5 4 MET E 20 GLN E 26 -1 O THR E 25 N THR E 6 SHEET 3 AB5 4 LEU E 77 LEU E 79 -1 O LEU E 77 N LEU E 22 SHEET 4 AB5 4 ASN E 66 VAL E 67 -1 N ASN E 66 O ARG E 78 SHEET 1 AB6 6 PHE E 11 LYS E 15 0 SHEET 2 AB6 6 THR E 110 VAL E 115 1 O THR E 113 N LEU E 14 SHEET 3 AB6 6 SER E 88 SER E 95 -1 N TYR E 90 O THR E 110 SHEET 4 AB6 6 TYR E 32 GLN E 38 -1 N TYR E 34 O ALA E 93 SHEET 5 AB6 6 LYS E 45 GLY E 52 -1 O ILE E 47 N TRP E 35 SHEET 6 AB6 6 ILE E 55 LYS E 58 -1 O ASP E 57 N TYR E 49 SHEET 1 AB7 4 PHE E 11 LYS E 15 0 SHEET 2 AB7 4 THR E 110 VAL E 115 1 O THR E 113 N LEU E 14 SHEET 3 AB7 4 SER E 88 SER E 95 -1 N TYR E 90 O THR E 110 SHEET 4 AB7 4 THR E 105 PHE E 106 -1 O THR E 105 N SER E 94 SHEET 1 AB8 4 LYS E 165 VAL E 167 0 SHEET 2 AB8 4 VAL E 156 VAL E 162 -1 N VAL E 162 O LYS E 165 SHEET 3 AB8 4 HIS E 208 PHE E 215 -1 O GLN E 212 N SER E 159 SHEET 4 AB8 4 GLN E 234 TRP E 241 -1 O GLN E 234 N PHE E 215 SSBOND 1 CYS A 101 CYS A 164 1555 1555 2.04 SSBOND 2 CYS A 203 CYS A 259 1555 1555 2.03 SSBOND 3 CYS B 25 CYS B 80 1555 1555 2.01 SSBOND 4 CYS D 24 CYS D 91 1555 1555 2.02 SSBOND 5 CYS D 135 CYS D 185 1555 1555 2.04 SSBOND 6 CYS D 160 CYS E 172 1555 1555 2.03 SSBOND 7 CYS E 24 CYS E 92 1555 1555 2.02 SSBOND 8 CYS E 146 CYS E 211 1555 1555 2.02 CISPEP 1 TYR A 209 PRO A 210 0 -1.03 CISPEP 2 HIS B 31 PRO B 32 0 5.58 CISPEP 3 ILE D 8 PRO D 9 0 14.57 CISPEP 4 THR E 8 PRO E 9 0 -6.96 CISPEP 5 TYR E 152 PRO E 153 0 -1.06 CRYST1 80.133 48.854 124.210 90.00 92.84 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012479 0.000000 0.000618 0.00000 SCALE2 0.000000 0.020469 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008061 0.00000