HEADER TRANSFERASE 15-FEB-24 8S1A TITLE C-KIT KINASE DOMAIN IN COMPLEX WITH CRENOLANIB COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAST/STEM CELL GROWTH FACTOR RECEPTOR KIT; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SCFR,PIEBALD TRAIT PROTEIN,PBT,PROTO-ONCOGENE C-KIT, COMPND 5 TYROSINE-PROTEIN KINASE KIT,P145 C-KIT,V-KIT HARDY-ZUCKERMAN 4 FELINE COMPND 6 SARCOMA VIRAL ONCOGENE HOMOLOG; COMPND 7 EC: 2.7.10.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: KIT, SCFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS STEM CELL FACTOR RECEPTOR, INHIBITOR, GIST, RESISTANCE, KIT, KEYWDS 2 CRENOLANIB, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.TEUBER,M.P.MUELLER,D.RAUH REVDAT 1 03-SEP-25 8S1A 0 JRNL AUTH A.TEUBER,J.NIGGENABER,S.B.KLEINBOELTING,I.LANDEL,J.WARMUTH, JRNL AUTH 2 D.BUSICK,M.P.MUELLER,S.BAUER,D.RAUH JRNL TITL C-KIT KINASE DOMAIN IN COMPLEX WITH CRENOLANIB JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 59012 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2951 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.5300 - 5.1000 1.00 2893 153 0.1871 0.1950 REMARK 3 2 5.1000 - 4.0500 1.00 2761 145 0.1514 0.1393 REMARK 3 3 4.0500 - 3.5400 1.00 2691 142 0.1648 0.2178 REMARK 3 4 3.5400 - 3.2200 1.00 2723 144 0.1906 0.2128 REMARK 3 5 3.2100 - 2.9800 1.00 2659 139 0.1959 0.2062 REMARK 3 6 2.9800 - 2.8100 1.00 2685 141 0.2113 0.2430 REMARK 3 7 2.8100 - 2.6700 1.00 2711 143 0.1935 0.2138 REMARK 3 8 2.6700 - 2.5500 1.00 2630 138 0.1947 0.2167 REMARK 3 9 2.5500 - 2.4500 1.00 2666 141 0.1905 0.2119 REMARK 3 10 2.4500 - 2.3700 1.00 2655 140 0.1861 0.2058 REMARK 3 11 2.3700 - 2.2900 1.00 2622 138 0.1894 0.2274 REMARK 3 12 2.2900 - 2.2300 1.00 2670 140 0.1996 0.2431 REMARK 3 13 2.2300 - 2.1700 1.00 2660 140 0.1823 0.2418 REMARK 3 14 2.1700 - 2.1200 1.00 2615 138 0.1931 0.2176 REMARK 3 15 2.1200 - 2.0700 1.00 2638 139 0.1917 0.2511 REMARK 3 16 2.0700 - 2.0300 1.00 2669 140 0.2012 0.2667 REMARK 3 17 2.0300 - 1.9900 1.00 2566 135 0.2079 0.2138 REMARK 3 18 1.9800 - 1.9500 1.00 2693 142 0.2174 0.2545 REMARK 3 19 1.9500 - 1.9100 1.00 2606 137 0.2492 0.2943 REMARK 3 20 1.9100 - 1.8800 1.00 2640 139 0.2901 0.3164 REMARK 3 21 1.8800 - 1.8500 1.00 2608 137 0.3192 0.3896 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.227 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.616 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.05 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 5017 REMARK 3 ANGLE : 1.021 6828 REMARK 3 CHIRALITY : 0.055 734 REMARK 3 PLANARITY : 0.008 859 REMARK 3 DIHEDRAL : 14.637 1859 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 565 THROUGH 677 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.1497 1.8926 -12.2283 REMARK 3 T TENSOR REMARK 3 T11: 0.3038 T22: 0.3204 REMARK 3 T33: 0.3001 T12: 0.0374 REMARK 3 T13: -0.0018 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.3944 L22: 0.9415 REMARK 3 L33: 1.6084 L12: 0.5653 REMARK 3 L13: 0.2568 L23: 0.5095 REMARK 3 S TENSOR REMARK 3 S11: -0.0700 S12: 0.1421 S13: 0.0550 REMARK 3 S21: -0.1592 S22: 0.1286 S23: 0.1633 REMARK 3 S31: 0.1684 S32: 0.0353 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 678 THROUGH 828 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.7677 -3.3561 5.8667 REMARK 3 T TENSOR REMARK 3 T11: 0.3537 T22: 0.3017 REMARK 3 T33: 0.2878 T12: 0.0504 REMARK 3 T13: -0.0188 T23: 0.0093 REMARK 3 L TENSOR REMARK 3 L11: 1.6337 L22: 0.0885 REMARK 3 L33: 1.8132 L12: 0.3364 REMARK 3 L13: -0.2530 L23: 0.1665 REMARK 3 S TENSOR REMARK 3 S11: 0.0363 S12: 0.0428 S13: 0.0880 REMARK 3 S21: -0.3492 S22: -0.0051 S23: 0.0176 REMARK 3 S31: 0.2797 S32: 0.2155 S33: 0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 829 THROUGH 931 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.3915 2.1857 15.7982 REMARK 3 T TENSOR REMARK 3 T11: 0.2898 T22: 0.2710 REMARK 3 T33: 0.2869 T12: 0.0170 REMARK 3 T13: 0.0080 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 1.4285 L22: 0.9904 REMARK 3 L33: 1.8589 L12: -0.0743 REMARK 3 L13: -0.2762 L23: -0.4895 REMARK 3 S TENSOR REMARK 3 S11: -0.0197 S12: -0.1096 S13: 0.0117 REMARK 3 S21: 0.0817 S22: 0.0771 S23: 0.0954 REMARK 3 S31: -0.0230 S32: 0.1103 S33: -0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 566 THROUGH 600 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.6798 19.1214 61.9871 REMARK 3 T TENSOR REMARK 3 T11: 0.3593 T22: 0.3172 REMARK 3 T33: 0.3665 T12: -0.0252 REMARK 3 T13: -0.0456 T23: 0.0226 REMARK 3 L TENSOR REMARK 3 L11: 0.8222 L22: 0.0582 REMARK 3 L33: 0.0603 L12: -0.3210 REMARK 3 L13: 0.0337 L23: 0.0658 REMARK 3 S TENSOR REMARK 3 S11: -0.1441 S12: -0.1007 S13: 0.2947 REMARK 3 S21: 0.0117 S22: 0.0321 S23: 0.0783 REMARK 3 S31: -0.0159 S32: -0.0773 S33: 0.0000 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 601 THROUGH 828 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8917 22.3344 52.0031 REMARK 3 T TENSOR REMARK 3 T11: 0.2751 T22: 0.2741 REMARK 3 T33: 0.3281 T12: 0.0404 REMARK 3 T13: 0.0033 T23: 0.0281 REMARK 3 L TENSOR REMARK 3 L11: 0.6259 L22: 1.3505 REMARK 3 L33: 2.7186 L12: 0.2185 REMARK 3 L13: -0.1804 L23: -1.0684 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: 0.0035 S13: 0.1020 REMARK 3 S21: -0.0239 S22: -0.0753 S23: -0.0877 REMARK 3 S31: 0.1716 S32: 0.0760 S33: -0.0020 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 829 THROUGH 931 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7753 29.4876 33.4372 REMARK 3 T TENSOR REMARK 3 T11: 0.2904 T22: 0.3205 REMARK 3 T33: 0.2978 T12: 0.0495 REMARK 3 T13: 0.0393 T23: 0.0547 REMARK 3 L TENSOR REMARK 3 L11: 0.6478 L22: 1.4230 REMARK 3 L33: 1.1568 L12: -0.1421 REMARK 3 L13: 0.2205 L23: -0.7917 REMARK 3 S TENSOR REMARK 3 S11: 0.1077 S12: 0.0926 S13: 0.0457 REMARK 3 S21: -0.2020 S22: -0.2340 S23: -0.1231 REMARK 3 S31: 0.2498 S32: -0.0003 S33: -0.0027 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8856 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59036 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 47.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.96 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.95 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CONCENTRATION: 2 MG/ML, 100 MM REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.77000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.70500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.76500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 95.70500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.77000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 29.76500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 548 REMARK 465 SER A 549 REMARK 465 MET A 550 REMARK 465 PRO A 551 REMARK 465 MET A 552 REMARK 465 TYR A 553 REMARK 465 GLU A 554 REMARK 465 VAL A 555 REMARK 465 GLN A 556 REMARK 465 TRP A 557 REMARK 465 LYS A 558 REMARK 465 VAL A 559 REMARK 465 VAL A 560 REMARK 465 GLU A 561 REMARK 465 GLU A 562 REMARK 465 SER A 563 REMARK 465 ASN A 564 REMARK 465 LYS A 613 REMARK 465 SER A 614 REMARK 465 ASP A 615 REMARK 465 VAL A 754 REMARK 465 ALA A 755 REMARK 465 PRO A 756 REMARK 465 GLU A 757 REMARK 465 ASP A 758 REMARK 465 LEU A 759 REMARK 465 TYR A 760 REMARK 465 LYS A 761 REMARK 465 THR A 932 REMARK 465 ASN A 933 REMARK 465 HIS A 934 REMARK 465 GLY B 548 REMARK 465 SER B 549 REMARK 465 MET B 550 REMARK 465 PRO B 551 REMARK 465 MET B 552 REMARK 465 TYR B 553 REMARK 465 GLU B 554 REMARK 465 VAL B 555 REMARK 465 GLN B 556 REMARK 465 TRP B 557 REMARK 465 LYS B 558 REMARK 465 VAL B 559 REMARK 465 VAL B 560 REMARK 465 GLU B 561 REMARK 465 GLU B 562 REMARK 465 SER B 563 REMARK 465 ASN B 564 REMARK 465 GLY B 565 REMARK 465 LYS B 753 REMARK 465 VAL B 754 REMARK 465 ALA B 755 REMARK 465 PRO B 756 REMARK 465 GLU B 757 REMARK 465 ASP B 758 REMARK 465 LEU B 759 REMARK 465 TYR B 760 REMARK 465 LYS B 761 REMARK 465 THR B 932 REMARK 465 ASN B 933 REMARK 465 HIS B 934 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 566 CG OD1 ND2 REMARK 470 GLU A 688 CG CD OE1 OE2 REMARK 470 HIS B 630 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 826 CG CD CE NZ REMARK 470 ASN B 828 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 809 CB CYS A 809 SG -0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 791 -0.98 75.21 REMARK 500 ASP A 792 45.87 -144.43 REMARK 500 THR A 801 -160.82 -121.43 REMARK 500 ASP A 810 93.25 66.24 REMARK 500 SER A 821 9.61 56.22 REMARK 500 ASP B 792 45.32 -143.51 REMARK 500 THR B 801 -163.80 -128.40 REMARK 500 ASP B 810 90.66 62.68 REMARK 500 REMARK 500 REMARK: NULL DBREF 8S1A A 551 687 UNP P10721 KIT_HUMAN 551 687 DBREF 8S1A A 766 934 UNP P10721 KIT_HUMAN 766 934 DBREF 8S1A B 551 687 UNP P10721 KIT_HUMAN 551 687 DBREF 8S1A B 766 934 UNP P10721 KIT_HUMAN 766 934 SEQADV 8S1A GLY A 548 UNP P10721 EXPRESSION TAG SEQADV 8S1A SER A 549 UNP P10721 EXPRESSION TAG SEQADV 8S1A MET A 550 UNP P10721 EXPRESSION TAG SEQADV 8S1A SER A 563 UNP P10721 ILE 563 ENGINEERED MUTATION SEQADV 8S1A SER A 569 UNP P10721 VAL 569 ENGINEERED MUTATION SEQADV 8S1A GLN A 609 UNP P10721 TYR 609 ENGINEERED MUTATION SEQADV 8S1A SER A 631 UNP P10721 LEU 631 ENGINEERED MUTATION SEQADV 8S1A GLU A 651 UNP P10721 MET 651 ENGINEERED MUTATION SEQADV 8S1A HIS A 662 UNP P10721 ILE 662 ENGINEERED MUTATION SEQADV 8S1A GLU A 688 UNP P10721 LINKER SEQADV 8S1A PHE A 689 UNP P10721 LINKER SEQADV 8S1A VAL A 690 UNP P10721 LINKER SEQADV 8S1A PRO A 691 UNP P10721 LINKER SEQADV 8S1A TYR A 692 UNP P10721 LINKER SEQADV 8S1A LYS A 693 UNP P10721 LINKER SEQADV 8S1A VAL A 754 UNP P10721 LINKER SEQADV 8S1A ALA A 755 UNP P10721 LINKER SEQADV 8S1A PRO A 756 UNP P10721 LINKER SEQADV 8S1A GLU A 757 UNP P10721 LINKER SEQADV 8S1A ASP A 758 UNP P10721 LINKER SEQADV 8S1A LEU A 759 UNP P10721 LINKER SEQADV 8S1A TYR A 760 UNP P10721 LINKER SEQADV 8S1A LYS A 761 UNP P10721 LINKER SEQADV 8S1A ASP A 762 UNP P10721 LINKER SEQADV 8S1A PHE A 763 UNP P10721 LINKER SEQADV 8S1A LEU A 764 UNP P10721 LINKER SEQADV 8S1A THR A 765 UNP P10721 LINKER SEQADV 8S1A HIS A 768 UNP P10721 ASP 768 ENGINEERED MUTATION SEQADV 8S1A ASN A 804 UNP P10721 ARG 804 ENGINEERED MUTATION SEQADV 8S1A ASP A 825 UNP P10721 VAL 825 ENGINEERED MUTATION SEQADV 8S1A SER A 844 UNP P10721 CYS 844 ENGINEERED MUTATION SEQADV 8S1A SER A 890 UNP P10721 LEU 890 ENGINEERED MUTATION SEQADV 8S1A TYR A 894 UNP P10721 HIS 894 ENGINEERED MUTATION SEQADV 8S1A ASP A 912 UNP P10721 LEU 912 ENGINEERED MUTATION SEQADV 8S1A ASP A 923 UNP P10721 LEU 923 ENGINEERED MUTATION SEQADV 8S1A GLY B 548 UNP P10721 EXPRESSION TAG SEQADV 8S1A SER B 549 UNP P10721 EXPRESSION TAG SEQADV 8S1A MET B 550 UNP P10721 EXPRESSION TAG SEQADV 8S1A SER B 563 UNP P10721 ILE 563 ENGINEERED MUTATION SEQADV 8S1A SER B 569 UNP P10721 VAL 569 ENGINEERED MUTATION SEQADV 8S1A GLN B 609 UNP P10721 TYR 609 ENGINEERED MUTATION SEQADV 8S1A SER B 631 UNP P10721 LEU 631 ENGINEERED MUTATION SEQADV 8S1A GLU B 651 UNP P10721 MET 651 ENGINEERED MUTATION SEQADV 8S1A HIS B 662 UNP P10721 ILE 662 ENGINEERED MUTATION SEQADV 8S1A GLU B 688 UNP P10721 LINKER SEQADV 8S1A PHE B 689 UNP P10721 LINKER SEQADV 8S1A VAL B 690 UNP P10721 LINKER SEQADV 8S1A PRO B 691 UNP P10721 LINKER SEQADV 8S1A TYR B 692 UNP P10721 LINKER SEQADV 8S1A LYS B 753 UNP P10721 LINKER SEQADV 8S1A VAL B 754 UNP P10721 LINKER SEQADV 8S1A ALA B 755 UNP P10721 LINKER SEQADV 8S1A PRO B 756 UNP P10721 LINKER SEQADV 8S1A GLU B 757 UNP P10721 LINKER SEQADV 8S1A ASP B 758 UNP P10721 LINKER SEQADV 8S1A LEU B 759 UNP P10721 LINKER SEQADV 8S1A TYR B 760 UNP P10721 LINKER SEQADV 8S1A LYS B 761 UNP P10721 LINKER SEQADV 8S1A ASP B 762 UNP P10721 LINKER SEQADV 8S1A PHE B 763 UNP P10721 LINKER SEQADV 8S1A LEU B 764 UNP P10721 LINKER SEQADV 8S1A THR B 765 UNP P10721 LINKER SEQADV 8S1A HIS B 768 UNP P10721 ASP 768 ENGINEERED MUTATION SEQADV 8S1A ASN B 804 UNP P10721 ARG 804 ENGINEERED MUTATION SEQADV 8S1A ASP B 825 UNP P10721 VAL 825 ENGINEERED MUTATION SEQADV 8S1A SER B 844 UNP P10721 CYS 844 ENGINEERED MUTATION SEQADV 8S1A SER B 890 UNP P10721 LEU 890 ENGINEERED MUTATION SEQADV 8S1A TYR B 894 UNP P10721 HIS 894 ENGINEERED MUTATION SEQADV 8S1A ASP B 912 UNP P10721 LEU 912 ENGINEERED MUTATION SEQADV 8S1A ASP B 923 UNP P10721 LEU 923 ENGINEERED MUTATION SEQRES 1 A 327 GLY SER MET PRO MET TYR GLU VAL GLN TRP LYS VAL VAL SEQRES 2 A 327 GLU GLU SER ASN GLY ASN ASN TYR SER TYR ILE ASP PRO SEQRES 3 A 327 THR GLN LEU PRO TYR ASP HIS LYS TRP GLU PHE PRO ARG SEQRES 4 A 327 ASN ARG LEU SER PHE GLY LYS THR LEU GLY ALA GLY ALA SEQRES 5 A 327 PHE GLY LYS VAL VAL GLU ALA THR ALA GLN GLY LEU ILE SEQRES 6 A 327 LYS SER ASP ALA ALA MET THR VAL ALA VAL LYS MET LEU SEQRES 7 A 327 LYS PRO SER ALA HIS SER THR GLU ARG GLU ALA LEU MET SEQRES 8 A 327 SER GLU LEU LYS VAL LEU SER TYR LEU GLY ASN HIS GLU SEQRES 9 A 327 ASN ILE VAL ASN LEU LEU GLY ALA CYS THR HIS GLY GLY SEQRES 10 A 327 PRO THR LEU VAL ILE THR GLU TYR CYS CYS TYR GLY ASP SEQRES 11 A 327 LEU LEU ASN PHE LEU ARG ARG LYS ARG ASP GLU PHE VAL SEQRES 12 A 327 PRO TYR LYS VAL ALA PRO GLU ASP LEU TYR LYS ASP PHE SEQRES 13 A 327 LEU THR LEU GLU HIS LEU LEU SER PHE SER TYR GLN VAL SEQRES 14 A 327 ALA LYS GLY MET ALA PHE LEU ALA SER LYS ASN CYS ILE SEQRES 15 A 327 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU LEU THR HIS SEQRES 16 A 327 GLY ASN ILE THR LYS ILE CYS ASP PHE GLY LEU ALA ARG SEQRES 17 A 327 ASP ILE LYS ASN ASP SER ASN TYR VAL ASP LYS GLY ASN SEQRES 18 A 327 ALA ARG LEU PRO VAL LYS TRP MET ALA PRO GLU SER ILE SEQRES 19 A 327 PHE ASN SER VAL TYR THR PHE GLU SER ASP VAL TRP SER SEQRES 20 A 327 TYR GLY ILE PHE LEU TRP GLU LEU PHE SER LEU GLY SER SEQRES 21 A 327 SER PRO TYR PRO GLY MET PRO VAL ASP SER LYS PHE TYR SEQRES 22 A 327 LYS MET ILE LYS GLU GLY PHE ARG MET SER SER PRO GLU SEQRES 23 A 327 TYR ALA PRO ALA GLU MET TYR ASP ILE MET LYS THR CYS SEQRES 24 A 327 TRP ASP ALA ASP PRO ASP LYS ARG PRO THR PHE LYS GLN SEQRES 25 A 327 ILE VAL GLN ASP ILE GLU LYS GLN ILE SER GLU SER THR SEQRES 26 A 327 ASN HIS SEQRES 1 B 327 GLY SER MET PRO MET TYR GLU VAL GLN TRP LYS VAL VAL SEQRES 2 B 327 GLU GLU SER ASN GLY ASN ASN TYR SER TYR ILE ASP PRO SEQRES 3 B 327 THR GLN LEU PRO TYR ASP HIS LYS TRP GLU PHE PRO ARG SEQRES 4 B 327 ASN ARG LEU SER PHE GLY LYS THR LEU GLY ALA GLY ALA SEQRES 5 B 327 PHE GLY LYS VAL VAL GLU ALA THR ALA GLN GLY LEU ILE SEQRES 6 B 327 LYS SER ASP ALA ALA MET THR VAL ALA VAL LYS MET LEU SEQRES 7 B 327 LYS PRO SER ALA HIS SER THR GLU ARG GLU ALA LEU MET SEQRES 8 B 327 SER GLU LEU LYS VAL LEU SER TYR LEU GLY ASN HIS GLU SEQRES 9 B 327 ASN ILE VAL ASN LEU LEU GLY ALA CYS THR HIS GLY GLY SEQRES 10 B 327 PRO THR LEU VAL ILE THR GLU TYR CYS CYS TYR GLY ASP SEQRES 11 B 327 LEU LEU ASN PHE LEU ARG ARG LYS ARG ASP GLU PHE VAL SEQRES 12 B 327 PRO TYR LYS VAL ALA PRO GLU ASP LEU TYR LYS ASP PHE SEQRES 13 B 327 LEU THR LEU GLU HIS LEU LEU SER PHE SER TYR GLN VAL SEQRES 14 B 327 ALA LYS GLY MET ALA PHE LEU ALA SER LYS ASN CYS ILE SEQRES 15 B 327 HIS ARG ASP LEU ALA ALA ARG ASN ILE LEU LEU THR HIS SEQRES 16 B 327 GLY ASN ILE THR LYS ILE CYS ASP PHE GLY LEU ALA ARG SEQRES 17 B 327 ASP ILE LYS ASN ASP SER ASN TYR VAL ASP LYS GLY ASN SEQRES 18 B 327 ALA ARG LEU PRO VAL LYS TRP MET ALA PRO GLU SER ILE SEQRES 19 B 327 PHE ASN SER VAL TYR THR PHE GLU SER ASP VAL TRP SER SEQRES 20 B 327 TYR GLY ILE PHE LEU TRP GLU LEU PHE SER LEU GLY SER SEQRES 21 B 327 SER PRO TYR PRO GLY MET PRO VAL ASP SER LYS PHE TYR SEQRES 22 B 327 LYS MET ILE LYS GLU GLY PHE ARG MET SER SER PRO GLU SEQRES 23 B 327 TYR ALA PRO ALA GLU MET TYR ASP ILE MET LYS THR CYS SEQRES 24 B 327 TRP ASP ALA ASP PRO ASP LYS ARG PRO THR PHE LYS GLN SEQRES 25 B 327 ILE VAL GLN ASP ILE GLU LYS GLN ILE SER GLU SER THR SEQRES 26 B 327 ASN HIS HET 6T2 A1001 33 HET 6T2 B1001 33 HETNAM 6T2 1-(2-{5-[(3-METHYLOXETAN-3-YL)METHOXY]-1H-BENZIMIDAZOL- HETNAM 2 6T2 1-YL}QUINOLIN-8-YL)PIPERIDIN-4-AMINE HETSYN 6T2 CRENOLANIB FORMUL 3 6T2 2(C26 H29 N5 O2) FORMUL 5 HOH *393(H2 O) HELIX 1 AA1 ASP A 572 LEU A 576 5 5 HELIX 2 AA2 ASP A 579 GLU A 583 5 5 HELIX 3 AA3 PRO A 585 ASN A 587 5 3 HELIX 4 AA4 HIS A 630 GLY A 648 1 19 HELIX 5 AA5 ASP A 677 ARG A 686 1 10 HELIX 6 AA6 ASP A 687 PHE A 689 5 3 HELIX 7 AA7 THR A 765 LYS A 786 1 22 HELIX 8 AA8 ALA A 794 ARG A 796 5 3 HELIX 9 AA9 HIS A 802 ASN A 804 5 3 HELIX 10 AB1 PRO A 832 MET A 836 5 5 HELIX 11 AB2 ALA A 837 SER A 844 1 8 HELIX 12 AB3 THR A 847 SER A 864 1 18 HELIX 13 AB4 ASP A 876 GLY A 886 1 11 HELIX 14 AB5 PRO A 896 TRP A 907 1 12 HELIX 15 AB6 ASP A 910 ARG A 914 5 5 HELIX 16 AB7 THR A 916 SER A 931 1 16 HELIX 17 AB8 ASP B 572 LEU B 576 5 5 HELIX 18 AB9 ASP B 579 GLU B 583 5 5 HELIX 19 AC1 PRO B 585 ASN B 587 5 3 HELIX 20 AC2 HIS B 630 GLY B 648 1 19 HELIX 21 AC3 ASP B 677 ARG B 686 1 10 HELIX 22 AC4 ASP B 687 PHE B 689 5 3 HELIX 23 AC5 THR B 765 LYS B 786 1 22 HELIX 24 AC6 ALA B 794 ARG B 796 5 3 HELIX 25 AC7 HIS B 802 ASN B 804 5 3 HELIX 26 AC8 PRO B 832 MET B 836 5 5 HELIX 27 AC9 ALA B 837 SER B 844 1 8 HELIX 28 AD1 THR B 847 SER B 864 1 18 HELIX 29 AD2 ASP B 876 GLY B 886 1 11 HELIX 30 AD3 PRO B 896 TRP B 907 1 12 HELIX 31 AD4 ASP B 910 ARG B 914 5 5 HELIX 32 AD5 THR B 916 GLU B 930 1 15 SHEET 1 AA1 5 LEU A 589 GLY A 598 0 SHEET 2 AA1 5 GLY A 601 GLN A 609 -1 O GLU A 605 N GLY A 592 SHEET 3 AA1 5 ALA A 617 MET A 624 -1 O MET A 624 N LYS A 602 SHEET 4 AA1 5 LEU A 667 GLU A 671 -1 O THR A 670 N ALA A 621 SHEET 5 AA1 5 LEU A 656 CYS A 660 -1 N LEU A 657 O ILE A 669 SHEET 1 AA2 2 CYS A 788 ILE A 789 0 SHEET 2 AA2 2 ARG A 815 ASP A 816 -1 O ARG A 815 N ILE A 789 SHEET 1 AA3 2 ILE A 798 LEU A 800 0 SHEET 2 AA3 2 THR A 806 ILE A 808 -1 O LYS A 807 N LEU A 799 SHEET 1 AA4 2 TYR A 823 VAL A 824 0 SHEET 2 AA4 2 VAL A 845 TYR A 846 -1 O TYR A 846 N TYR A 823 SHEET 1 AA5 5 LEU B 589 GLY B 598 0 SHEET 2 AA5 5 GLY B 601 GLN B 609 -1 O GLU B 605 N GLY B 592 SHEET 3 AA5 5 ALA B 617 MET B 624 -1 O MET B 618 N ALA B 608 SHEET 4 AA5 5 LEU B 667 GLU B 671 -1 O THR B 670 N ALA B 621 SHEET 5 AA5 5 LEU B 656 CYS B 660 -1 N LEU B 657 O ILE B 669 SHEET 1 AA6 2 CYS B 788 ILE B 789 0 SHEET 2 AA6 2 ARG B 815 ASP B 816 -1 O ARG B 815 N ILE B 789 SHEET 1 AA7 2 ILE B 798 THR B 801 0 SHEET 2 AA7 2 ILE B 805 ILE B 808 -1 O LYS B 807 N LEU B 799 SHEET 1 AA8 2 TYR B 823 VAL B 824 0 SHEET 2 AA8 2 VAL B 845 TYR B 846 -1 O TYR B 846 N TYR B 823 CISPEP 1 GLY B 664 PRO B 665 0 -4.62 CRYST1 59.540 59.530 191.410 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016795 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005224 0.00000 CONECT 4804 4827 4828 CONECT 4805 4806 4825 4827 CONECT 4806 4805 4807 CONECT 4807 4806 4809 CONECT 4808 4831 4832 CONECT 4809 4807 4810 4826 CONECT 4810 4809 4813 4825 CONECT 4811 4812 4827 4829 CONECT 4812 4811 4814 4828 CONECT 4813 4810 4816 4824 CONECT 4814 4812 4815 CONECT 4815 4814 4830 4831 CONECT 4816 4813 4817 CONECT 4817 4816 4826 CONECT 4818 4819 4824 CONECT 4819 4818 4820 CONECT 4820 4819 4821 4822 CONECT 4821 4820 CONECT 4822 4820 4823 CONECT 4823 4822 4824 CONECT 4824 4813 4818 4823 CONECT 4825 4805 4810 CONECT 4826 4809 4817 CONECT 4827 4804 4805 4811 CONECT 4828 4804 4812 CONECT 4829 4811 4830 CONECT 4830 4815 4829 CONECT 4831 4808 4815 CONECT 4832 4808 4833 4834 4836 CONECT 4833 4832 CONECT 4834 4832 4835 CONECT 4835 4834 4836 CONECT 4836 4832 4835 CONECT 4837 4860 4861 CONECT 4838 4839 4858 4860 CONECT 4839 4838 4840 CONECT 4840 4839 4842 CONECT 4841 4864 4865 CONECT 4842 4840 4843 4859 CONECT 4843 4842 4846 4858 CONECT 4844 4845 4860 4862 CONECT 4845 4844 4847 4861 CONECT 4846 4843 4849 4857 CONECT 4847 4845 4848 CONECT 4848 4847 4863 4864 CONECT 4849 4846 4850 CONECT 4850 4849 4859 CONECT 4851 4852 4857 CONECT 4852 4851 4853 CONECT 4853 4852 4854 4855 CONECT 4854 4853 CONECT 4855 4853 4856 CONECT 4856 4855 4857 CONECT 4857 4846 4851 4856 CONECT 4858 4838 4843 CONECT 4859 4842 4850 CONECT 4860 4837 4838 4844 CONECT 4861 4837 4845 CONECT 4862 4844 4863 CONECT 4863 4848 4862 CONECT 4864 4841 4848 CONECT 4865 4841 4866 4867 4869 CONECT 4866 4865 CONECT 4867 4865 4868 CONECT 4868 4867 4869 CONECT 4869 4865 4868 MASTER 427 0 2 32 22 0 0 6 5172 2 66 52 END