data_8S2A # _entry.id 8S2A # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.409 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 8S2A pdb_00008s2a 10.2210/pdb8s2a/pdb WWPDB D_1292134615 ? ? BMRB 34901 ? 10.13018/BMR34901 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date _pdbx_audit_revision_history.part_number 1 'Structure model' 1 0 2025-02-26 ? 2 'Structure model' 1 1 2026-01-14 ? # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.page_first' 6 2 'Structure model' '_citation.page_last' 7 2 'Structure model' '_citation.pdbx_database_id_DOI' 8 2 'Structure model' '_citation.pdbx_database_id_PubMed' 9 2 'Structure model' '_citation.title' 10 2 'Structure model' '_citation.year' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 8S2A _pdbx_database_status.recvd_initial_deposition_date 2024-02-16 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs . _pdbx_database_status.status_code_nmr_data REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name BMRB _pdbx_database_related.details 'NMR structure of xantholysin A in micellar DPC solution' _pdbx_database_related.db_id 34901 _pdbx_database_related.content_type unspecified # _pdbx_contact_author.id 2 _pdbx_contact_author.email jose.martins@ugent.be _pdbx_contact_author.name_first Jose _pdbx_contact_author.name_last Martins _pdbx_contact_author.name_mi C _pdbx_contact_author.role 'principal investigator/group leader' _pdbx_contact_author.identifier_ORCID 0000-0001-7350-2253 # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Kovacs, B.' 1 0000-0003-2715-5793 'Geudens, N.' 2 0000-0003-0459-7142 'Martins, J.C.' 3 0000-0001-7350-2253 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country DE _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Adv Sci' _citation.journal_id_ASTM ? _citation.journal_id_CSD ? _citation.journal_id_ISSN 2198-3844 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first e20365 _citation.page_last e20365 _citation.title 'Higher-Level Structural Classification of Pseudomonas Cyclic Lipopeptides through Their Bioactive Conformation.' _citation.year 2025 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1002/advs.202520365 _citation.pdbx_database_id_PubMed 41391051 _citation.pdbx_database_id_patent ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kovacs, B.' 1 0000-0003-2715-5793 primary 'Prasad, D.' 2 0000-0002-0266-3401 primary 'De Roo, V.' 3 0000-0002-3418-3285 primary 'Vanheede, M.' 4 0000-0002-6189-2618 primary 'Muangkaew, P.' 5 ? primary 'Madder, A.' 6 0000-0003-0179-7608 primary 'Hofte, M.' 7 0000-0002-0850-3249 primary 'De Mot, R.' 8 0000-0002-0030-9441 primary 'Geudens, N.' 9 0000-0003-0459-7142 primary 'Martins, J.C.' 10 0000-0001-7350-2253 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Xantholysin A' 1623.930 1 ? ? ? ;1) The polypeptide chain of xantholysin A consists of 14 amino acids. 2) The N-terminal amino acid (Leu) is acylated with an (R)-3-hydroxy-decanoic acid (IG8) moeity which is indicated as the first residue. 3) The depsi (ester) bond is established between the ILE15 carboxyl and SER8 side-chain OH group. ; 2 non-polymer syn '(3~{R})-3-oxidanyldecanoic acid' 188.264 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(D)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'L(DGL)(DGN)(DVA)(DLE)Q(DSN)(DVA)(DLE)(DGN)LL(DGN)I' _entity_poly.pdbx_seq_one_letter_code_can LEQVLQSVLQLLQI _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '(3~{R})-3-oxidanyldecanoic acid' _pdbx_entity_nonpoly.comp_id IG8 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 DGL n 1 3 DGN n 1 4 DVA n 1 5 DLE n 1 6 GLN n 1 7 DSN n 1 8 DVA n 1 9 DLE n 1 10 DGN n 1 11 LEU n 1 12 LEU n 1 13 DGN n 1 14 ILE n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num 1 _entity_src_nat.pdbx_end_seq_num 14 _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Pseudomonas putida' _entity_src_nat.pdbx_ncbi_taxonomy_id 303 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain BW11M1 _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DGL 'D-peptide linking' . 'D-GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 DGN 'D-peptide linking' . D-GLUTAMINE ? 'C5 H10 N2 O3' 146.144 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 DSN 'D-peptide linking' . D-SERINE ? 'C3 H7 N O3' 105.093 DVA 'D-peptide linking' . D-VALINE ? 'C5 H11 N O2' 117.146 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 IG8 non-polymer . '(3~{R})-3-oxidanyldecanoic acid' ? 'C10 H20 O3' 188.264 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 2 2 LEU LEU A . n A 1 2 DGL 2 3 3 DGL DGL A . n A 1 3 DGN 3 4 4 DGN DGN A . n A 1 4 DVA 4 5 5 DVA DVA A . n A 1 5 DLE 5 6 6 DLE DLE A . n A 1 6 GLN 6 7 7 GLN GLN A . n A 1 7 DSN 7 8 8 DSN DSN A . n A 1 8 DVA 8 9 9 DVA DVA A . n A 1 9 DLE 9 10 10 DLE DLE A . n A 1 10 DGN 10 11 11 DGN DGN A . n A 1 11 LEU 11 12 12 LEU LEU A . n A 1 12 LEU 12 13 13 LEU LEU A . n A 1 13 DGN 13 14 14 DGN DGN A . n A 1 14 ILE 14 15 15 ILE ILE A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id IG8 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id IG8 _pdbx_nonpoly_scheme.auth_mon_id IG8 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 8S2A _exptl.crystals_number ? _exptl.details ? _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 8S2A _struct.title 'NMR structure of xantholysin A in micellar DPC solution' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 8S2A _struct_keywords.text 'Non-ribosomal polypeptide, Cyclic lipodepsipeptide, Antimicrobial peptide, Biosurfactant, SURFACTANT PROTEIN' _struct_keywords.pdbx_keywords 'SURFACTANT PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 8S2A _struct_ref.pdbx_db_accession 8S2A _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 8S2A _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 14 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 8S2A _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 15 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 15 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details ;Occasional too-close contacts present in the NMR structure ensemble (structures #2-#11) are fully removed during the AMBER moleculary dynamics refinement (structure #1) ; _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support 'NMR Distance Restraints' _pdbx_struct_assembly_auth_evidence.details 'not applicable' # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0 _pdbx_struct_oper_list.matrix[1][2] 0.0 _pdbx_struct_oper_list.matrix[1][3] 0.0 _pdbx_struct_oper_list.vector[1] 0.0 _pdbx_struct_oper_list.matrix[2][1] 0.0 _pdbx_struct_oper_list.matrix[2][2] 1.0 _pdbx_struct_oper_list.matrix[2][3] 0.0 _pdbx_struct_oper_list.vector[2] 0.0 _pdbx_struct_oper_list.matrix[3][1] 0.0 _pdbx_struct_oper_list.matrix[3][2] 0.0 _pdbx_struct_oper_list.matrix[3][3] 1.0 _pdbx_struct_oper_list.vector[3] 0.0 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id AA1 _struct_conf.beg_label_comp_id LEU _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 1 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id DGN _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 10 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id LEU _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 2 _struct_conf.end_auth_comp_id DGN _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 11 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 1 C ? ? ? 1_555 A DGL 2 N ? ? A LEU 2 A DGL 3 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale2 covale both ? A LEU 1 N ? ? ? 1_555 B IG8 . C ? ? A LEU 2 A IG8 101 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale3 covale both ? A DGL 2 C ? ? ? 1_555 A DGN 3 N ? ? A DGL 3 A DGN 4 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale4 covale both ? A DGN 3 C ? ? ? 1_555 A DVA 4 N ? ? A DGN 4 A DVA 5 1_555 ? ? ? ? ? ? ? 1.370 ? ? covale5 covale both ? A DVA 4 C ? ? ? 1_555 A DLE 5 N ? ? A DVA 5 A DLE 6 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale6 covale both ? A DLE 5 C ? ? ? 1_555 A GLN 6 N ? ? A DLE 6 A GLN 7 1_555 ? ? ? ? ? ? ? 1.306 ? ? covale7 covale both ? A GLN 6 C ? ? ? 1_555 A DSN 7 N ? ? A GLN 7 A DSN 8 1_555 ? ? ? ? ? ? ? 1.367 ? ? covale8 covale both ? A DSN 7 C ? ? ? 1_555 A DVA 8 N ? ? A DSN 8 A DVA 9 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale9 covale both ? A DVA 8 C ? ? ? 1_555 A DLE 9 N ? ? A DVA 9 A DLE 10 1_555 ? ? ? ? ? ? ? 1.346 ? ? covale10 covale both ? A DLE 9 C ? ? ? 1_555 A DGN 10 N ? ? A DLE 10 A DGN 11 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale11 covale both ? A DGN 10 C ? ? ? 1_555 A LEU 11 N ? ? A DGN 11 A LEU 12 1_555 ? ? ? ? ? ? ? 1.384 ? ? covale12 covale both ? A LEU 12 C ? ? ? 1_555 A DGN 13 N ? ? A LEU 13 A DGN 14 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale13 covale both ? A DGN 13 C ? ? ? 1_555 A ILE 14 N ? ? A DGN 14 A ILE 15 1_555 ? ? ? ? ? ? ? 1.340 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id IG8 _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id . _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id LEU _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 1 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id IG8 _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 101 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id LEU _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 2 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom C _pdbx_modification_feature.modified_residue_id_linking_atom N _pdbx_modification_feature.modified_residue_id LEU _pdbx_modification_feature.ref_pcm_id 1 _pdbx_modification_feature.ref_comp_id IG8 _pdbx_modification_feature.type None _pdbx_modification_feature.category Lipid/lipid-like # _pdbx_entry_details.entry_id 8S2A _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.has_protein_modification Y # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OG A DSN 8 ? ? C A ILE 15 ? ? 1.36 2 2 O A DLE 6 ? ? H A DLE 10 ? ? 1.32 3 2 OG A DSN 8 ? ? C A ILE 15 ? ? 1.38 4 3 OG A DSN 8 ? ? C A ILE 15 ? ? 1.38 5 3 O A DLE 6 ? ? H A DLE 10 ? ? 1.49 6 4 O A DLE 6 ? ? H A DLE 10 ? ? 1.29 7 4 OG A DSN 8 ? ? C A ILE 15 ? ? 1.38 8 4 O A LEU 2 ? ? H A DLE 6 ? ? 1.59 9 5 OG A DSN 8 ? ? C A ILE 15 ? ? 1.38 10 5 O A DLE 6 ? ? H A DLE 10 ? ? 1.49 11 6 OG A DSN 8 ? ? C A ILE 15 ? ? 1.38 12 6 O A DLE 6 ? ? H A DLE 10 ? ? 1.49 13 7 O A DLE 6 ? ? H A DLE 10 ? ? 1.31 14 7 OG A DSN 8 ? ? C A ILE 15 ? ? 1.38 15 8 O A DLE 6 ? ? H A DLE 10 ? ? 1.33 16 8 OG A DSN 8 ? ? C A ILE 15 ? ? 1.38 17 9 O A DLE 6 ? ? H A DLE 10 ? ? 1.30 18 9 OG A DSN 8 ? ? C A ILE 15 ? ? 1.38 19 10 O A DLE 6 ? ? H A DLE 10 ? ? 1.31 20 10 OG A DSN 8 ? ? C A ILE 15 ? ? 1.38 21 11 O A DLE 6 ? ? H A DLE 10 ? ? 1.29 22 11 OG A DSN 8 ? ? C A ILE 15 ? ? 1.38 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CG1 _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 DVA _pdbx_validate_rmsd_angle.auth_seq_id_1 9 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CB _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 DVA _pdbx_validate_rmsd_angle.auth_seq_id_2 9 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 CG2 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 DVA _pdbx_validate_rmsd_angle.auth_seq_id_3 9 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.79 _pdbx_validate_rmsd_angle.angle_target_value 110.90 _pdbx_validate_rmsd_angle.angle_deviation -11.11 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.60 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 DGN A 11 ? ? 67.65 -4.46 2 1 DGN A 14 ? ? 74.51 -28.45 3 2 DGL A 3 ? ? 39.67 18.10 4 2 DGN A 14 ? ? 94.76 -48.60 5 3 DGL A 3 ? ? 39.51 17.30 6 4 DGL A 3 ? ? 33.88 17.60 7 4 DGN A 14 ? ? 116.06 -63.63 8 5 DGL A 3 ? ? 39.61 17.10 9 5 DGN A 14 ? ? 92.49 -50.31 10 6 DGL A 3 ? ? 37.21 19.02 11 6 DGN A 14 ? ? 93.13 -50.35 12 7 DGL A 3 ? ? 39.64 17.45 13 7 DGN A 14 ? ? 116.24 -64.08 14 8 DGL A 3 ? ? 38.00 17.78 15 8 DGN A 14 ? ? 94.47 -47.69 16 9 DGL A 3 ? ? 40.47 18.15 17 9 DGN A 14 ? ? 94.05 -48.02 18 10 DGL A 3 ? ? 39.14 17.59 19 10 DGN A 14 ? ? 93.66 -47.77 20 11 DGL A 3 ? ? 36.64 19.74 21 11 DGN A 14 ? ? 93.31 -47.39 # _pdbx_nmr_ensemble.entry_id 8S2A _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 11 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.representative_conformer ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 8S2A _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '3.2 mM xantholysin A, 162.9 mM [U-2H] DPC, 90% H2O/10% D2O' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' _pdbx_nmr_sample_details.label 1H _pdbx_nmr_sample_details.type solution _pdbx_nmr_sample_details.details ;Xantholysin A was dissolved in the micellar solution of uniformly deuterated dodecylphosphocholine (DPC-d38). Solvent: 10 mM Na2HPO4/NaH2PO4 buffer at pH 7.4. ; # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'xantholysin A' 3.2 ? mM 'natural abundance' 1 DPC 162.9 ? mM '[U-2H]' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.4 _pdbx_nmr_exptl_sample_conditions.ionic_strength '26 (buffer only)' _pdbx_nmr_exptl_sample_conditions.details ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_err ? _pdbx_nmr_exptl_sample_conditions.ionic_strength_units mM _pdbx_nmr_exptl_sample_conditions.label conditions_1 _pdbx_nmr_exptl_sample_conditions.pH_err ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.pressure_err ? _pdbx_nmr_exptl_sample_conditions.temperature_err ? _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.spectrometer_id _pdbx_nmr_exptl.sample_state 1 1 1 '2D NOESY' 1 isotropic 2 1 1 '2D 1H-1H TOCSY' 1 isotropic 3 1 1 '2D 1H-1H COSY' 1 isotropic 4 1 1 '2D 1H-13C HSQC' 1 isotropic # _pdbx_nmr_refine.entry_id 8S2A _pdbx_nmr_refine.method 'molecular dynamics' _pdbx_nmr_refine.details ;The lowest energy NMR structure issued from CNS was refined using unrestrained AMBER molecular dynamics simulations (against the ff14SB force field). Here, we modelled the interaction of a single peptide molecule with an explicit dodecylphosphocholine (DPC) micelle. The representative peptide conformation of the trajectory (=refined structure) was selected using cluster analysis. Solvent model: TIP3P. Occasional too-close contacts present in the NMR structure ensemble (structures #2-#11) are fully removed during the AMBER moleculary dynamics refinement (structure #1) ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.ordinal _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors 1 refinement Amber ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 2 'data analysis' AmberTools ? 'Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman' 3 processing TopSpin 3.x 'Bruker Biospin' 4 collection TopSpin 3.x 'Bruker Biospin' 5 'peak picking' 'CcpNmr Analysis' ? 'Vuister et al.' 6 'structure calculation' CNS ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 8 'chemical shift assignment' 'CcpNmr Analysis' ? 'Vuister et al.' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DGL N N N N 1 DGL CA C N R 2 DGL C C N N 3 DGL O O N N 4 DGL CB C N N 5 DGL CG C N N 6 DGL CD C N N 7 DGL OE1 O N N 8 DGL OE2 O N N 9 DGL OXT O N N 10 DGL H H N N 11 DGL H2 H N N 12 DGL HA H N N 13 DGL HB2 H N N 14 DGL HB3 H N N 15 DGL HG2 H N N 16 DGL HG3 H N N 17 DGL HE2 H N N 18 DGL HXT H N N 19 DGN N N N N 20 DGN CA C N R 21 DGN C C N N 22 DGN O O N N 23 DGN OXT O N N 24 DGN CB C N N 25 DGN CG C N N 26 DGN CD C N N 27 DGN OE1 O N N 28 DGN NE2 N N N 29 DGN H H N N 30 DGN H2 H N N 31 DGN HA H N N 32 DGN HXT H N N 33 DGN HB2 H N N 34 DGN HB3 H N N 35 DGN HG2 H N N 36 DGN HG3 H N N 37 DGN HE21 H N N 38 DGN HE22 H N N 39 DLE N N N N 40 DLE CA C N R 41 DLE CB C N N 42 DLE CG C N N 43 DLE CD1 C N N 44 DLE CD2 C N N 45 DLE C C N N 46 DLE O O N N 47 DLE OXT O N N 48 DLE H H N N 49 DLE H2 H N N 50 DLE HA H N N 51 DLE HB2 H N N 52 DLE HB3 H N N 53 DLE HG H N N 54 DLE HD11 H N N 55 DLE HD12 H N N 56 DLE HD13 H N N 57 DLE HD21 H N N 58 DLE HD22 H N N 59 DLE HD23 H N N 60 DLE HXT H N N 61 DSN N N N N 62 DSN CA C N R 63 DSN C C N N 64 DSN O O N N 65 DSN OXT O N N 66 DSN CB C N N 67 DSN OG O N N 68 DSN H H N N 69 DSN H2 H N N 70 DSN HA H N N 71 DSN HXT H N N 72 DSN HB2 H N N 73 DSN HB3 H N N 74 DSN HG H N N 75 DVA N N N N 76 DVA CA C N R 77 DVA CB C N N 78 DVA CG1 C N N 79 DVA CG2 C N N 80 DVA C C N N 81 DVA O O N N 82 DVA OXT O N N 83 DVA H H N N 84 DVA H2 H N N 85 DVA HA H N N 86 DVA HB H N N 87 DVA HG11 H N N 88 DVA HG12 H N N 89 DVA HG13 H N N 90 DVA HG21 H N N 91 DVA HG22 H N N 92 DVA HG23 H N N 93 DVA HXT H N N 94 GLN N N N N 95 GLN CA C N S 96 GLN C C N N 97 GLN O O N N 98 GLN CB C N N 99 GLN CG C N N 100 GLN CD C N N 101 GLN OE1 O N N 102 GLN NE2 N N N 103 GLN OXT O N N 104 GLN H H N N 105 GLN H2 H N N 106 GLN HA H N N 107 GLN HB2 H N N 108 GLN HB3 H N N 109 GLN HG2 H N N 110 GLN HG3 H N N 111 GLN HE21 H N N 112 GLN HE22 H N N 113 GLN HXT H N N 114 IG8 CA C N N 115 IG8 C C N N 116 IG8 O O N N 117 IG8 CB C N R 118 IG8 CG2 C N N 119 IG8 OG1 O N N 120 IG8 CD C N N 121 IG8 CE C N N 122 IG8 CZ C N N 123 IG8 CH C N N 124 IG8 CI C N N 125 IG8 CT C N N 126 IG8 O1 O N N 127 IG8 HA1 H N N 128 IG8 HA2 H N N 129 IG8 HB H N N 130 IG8 HG21 H N N 131 IG8 HG22 H N N 132 IG8 HG1 H N N 133 IG8 HD1 H N N 134 IG8 HD2 H N N 135 IG8 HE1 H N N 136 IG8 HE2 H N N 137 IG8 HZ1 H N N 138 IG8 HZ2 H N N 139 IG8 HH1 H N N 140 IG8 HH2 H N N 141 IG8 HI2 H N N 142 IG8 HI3 H N N 143 IG8 HI1 H N N 144 IG8 HT1 H N N 145 IG8 HT2 H N N 146 IG8 H1 H N N 147 ILE N N N N 148 ILE CA C N S 149 ILE C C N N 150 ILE O O N N 151 ILE CB C N S 152 ILE CG1 C N N 153 ILE CG2 C N N 154 ILE CD1 C N N 155 ILE OXT O N N 156 ILE H H N N 157 ILE H2 H N N 158 ILE HA H N N 159 ILE HB H N N 160 ILE HG12 H N N 161 ILE HG13 H N N 162 ILE HG21 H N N 163 ILE HG22 H N N 164 ILE HG23 H N N 165 ILE HD11 H N N 166 ILE HD12 H N N 167 ILE HD13 H N N 168 ILE HXT H N N 169 LEU N N N N 170 LEU CA C N S 171 LEU C C N N 172 LEU O O N N 173 LEU CB C N N 174 LEU CG C N N 175 LEU CD1 C N N 176 LEU CD2 C N N 177 LEU OXT O N N 178 LEU H H N N 179 LEU H2 H N N 180 LEU HA H N N 181 LEU HB2 H N N 182 LEU HB3 H N N 183 LEU HG H N N 184 LEU HD11 H N N 185 LEU HD12 H N N 186 LEU HD13 H N N 187 LEU HD21 H N N 188 LEU HD22 H N N 189 LEU HD23 H N N 190 LEU HXT H N N 191 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DGL N CA sing N N 1 DGL N H sing N N 2 DGL N H2 sing N N 3 DGL CA C sing N N 4 DGL CA CB sing N N 5 DGL CA HA sing N N 6 DGL C O doub N N 7 DGL C OXT sing N N 8 DGL CB CG sing N N 9 DGL CB HB2 sing N N 10 DGL CB HB3 sing N N 11 DGL CG CD sing N N 12 DGL CG HG2 sing N N 13 DGL CG HG3 sing N N 14 DGL CD OE1 doub N N 15 DGL CD OE2 sing N N 16 DGL OE2 HE2 sing N N 17 DGL OXT HXT sing N N 18 DGN N CA sing N N 19 DGN N H sing N N 20 DGN N H2 sing N N 21 DGN CA C sing N N 22 DGN CA CB sing N N 23 DGN CA HA sing N N 24 DGN C O doub N N 25 DGN C OXT sing N N 26 DGN OXT HXT sing N N 27 DGN CB CG sing N N 28 DGN CB HB2 sing N N 29 DGN CB HB3 sing N N 30 DGN CG CD sing N N 31 DGN CG HG2 sing N N 32 DGN CG HG3 sing N N 33 DGN CD OE1 doub N N 34 DGN CD NE2 sing N N 35 DGN NE2 HE21 sing N N 36 DGN NE2 HE22 sing N N 37 DLE N CA sing N N 38 DLE N H sing N N 39 DLE N H2 sing N N 40 DLE CA CB sing N N 41 DLE CA C sing N N 42 DLE CA HA sing N N 43 DLE CB CG sing N N 44 DLE CB HB2 sing N N 45 DLE CB HB3 sing N N 46 DLE CG CD1 sing N N 47 DLE CG CD2 sing N N 48 DLE CG HG sing N N 49 DLE CD1 HD11 sing N N 50 DLE CD1 HD12 sing N N 51 DLE CD1 HD13 sing N N 52 DLE CD2 HD21 sing N N 53 DLE CD2 HD22 sing N N 54 DLE CD2 HD23 sing N N 55 DLE C O doub N N 56 DLE C OXT sing N N 57 DLE OXT HXT sing N N 58 DSN N CA sing N N 59 DSN N H sing N N 60 DSN N H2 sing N N 61 DSN CA C sing N N 62 DSN CA CB sing N N 63 DSN CA HA sing N N 64 DSN C O doub N N 65 DSN C OXT sing N N 66 DSN OXT HXT sing N N 67 DSN CB OG sing N N 68 DSN CB HB2 sing N N 69 DSN CB HB3 sing N N 70 DSN OG HG sing N N 71 DVA N CA sing N N 72 DVA N H sing N N 73 DVA N H2 sing N N 74 DVA CA CB sing N N 75 DVA CA C sing N N 76 DVA CA HA sing N N 77 DVA CB CG1 sing N N 78 DVA CB CG2 sing N N 79 DVA CB HB sing N N 80 DVA CG1 HG11 sing N N 81 DVA CG1 HG12 sing N N 82 DVA CG1 HG13 sing N N 83 DVA CG2 HG21 sing N N 84 DVA CG2 HG22 sing N N 85 DVA CG2 HG23 sing N N 86 DVA C O doub N N 87 DVA C OXT sing N N 88 DVA OXT HXT sing N N 89 GLN N CA sing N N 90 GLN N H sing N N 91 GLN N H2 sing N N 92 GLN CA C sing N N 93 GLN CA CB sing N N 94 GLN CA HA sing N N 95 GLN C O doub N N 96 GLN C OXT sing N N 97 GLN CB CG sing N N 98 GLN CB HB2 sing N N 99 GLN CB HB3 sing N N 100 GLN CG CD sing N N 101 GLN CG HG2 sing N N 102 GLN CG HG3 sing N N 103 GLN CD OE1 doub N N 104 GLN CD NE2 sing N N 105 GLN NE2 HE21 sing N N 106 GLN NE2 HE22 sing N N 107 GLN OXT HXT sing N N 108 IG8 OG1 CB sing N N 109 IG8 C CA sing N N 110 IG8 C O doub N N 111 IG8 CA CB sing N N 112 IG8 CB CG2 sing N N 113 IG8 CG2 CD sing N N 114 IG8 CD CE sing N N 115 IG8 CE CZ sing N N 116 IG8 CZ CH sing N N 117 IG8 CH CT sing N N 118 IG8 CT CI sing N N 119 IG8 C O1 sing N N 120 IG8 CA HA1 sing N N 121 IG8 CA HA2 sing N N 122 IG8 CB HB sing N N 123 IG8 CG2 HG21 sing N N 124 IG8 CG2 HG22 sing N N 125 IG8 OG1 HG1 sing N N 126 IG8 CD HD1 sing N N 127 IG8 CD HD2 sing N N 128 IG8 CE HE1 sing N N 129 IG8 CE HE2 sing N N 130 IG8 CZ HZ1 sing N N 131 IG8 CZ HZ2 sing N N 132 IG8 CH HH1 sing N N 133 IG8 CH HH2 sing N N 134 IG8 CI HI2 sing N N 135 IG8 CI HI3 sing N N 136 IG8 CI HI1 sing N N 137 IG8 CT HT1 sing N N 138 IG8 CT HT2 sing N N 139 IG8 O1 H1 sing N N 140 ILE N CA sing N N 141 ILE N H sing N N 142 ILE N H2 sing N N 143 ILE CA C sing N N 144 ILE CA CB sing N N 145 ILE CA HA sing N N 146 ILE C O doub N N 147 ILE C OXT sing N N 148 ILE CB CG1 sing N N 149 ILE CB CG2 sing N N 150 ILE CB HB sing N N 151 ILE CG1 CD1 sing N N 152 ILE CG1 HG12 sing N N 153 ILE CG1 HG13 sing N N 154 ILE CG2 HG21 sing N N 155 ILE CG2 HG22 sing N N 156 ILE CG2 HG23 sing N N 157 ILE CD1 HD11 sing N N 158 ILE CD1 HD12 sing N N 159 ILE CD1 HD13 sing N N 160 ILE OXT HXT sing N N 161 LEU N CA sing N N 162 LEU N H sing N N 163 LEU N H2 sing N N 164 LEU CA C sing N N 165 LEU CA CB sing N N 166 LEU CA HA sing N N 167 LEU C O doub N N 168 LEU C OXT sing N N 169 LEU CB CG sing N N 170 LEU CB HB2 sing N N 171 LEU CB HB3 sing N N 172 LEU CG CD1 sing N N 173 LEU CG CD2 sing N N 174 LEU CG HG sing N N 175 LEU CD1 HD11 sing N N 176 LEU CD1 HD12 sing N N 177 LEU CD1 HD13 sing N N 178 LEU CD2 HD21 sing N N 179 LEU CD2 HD22 sing N N 180 LEU CD2 HD23 sing N N 181 LEU OXT HXT sing N N 182 # _pdbx_audit_support.funding_organization 'Research Foundation - Flanders (FWO)' _pdbx_audit_support.country Belgium _pdbx_audit_support.grant_number 'EOS project G0G3118N (EOS ID 30650620)' _pdbx_audit_support.ordinal 1 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model 'AVANCE II' _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 700 _pdbx_nmr_spectrometer.details 'Prodigy Cryoprobe' # _atom_sites.entry_id 8S2A _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.Cartn_transform_axes ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C H N O # loop_ #