HEADER CELL CYCLE 19-FEB-24 8S31 TITLE CRYSTAL STRUCTURE OF HUMAN PLK1 POLO-BOX DOMAIN IN COMPLEX WITH TITLE 2 MIS18BP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: POLO-LIKE KINASE 1,PLK-1,SERINE/THREONINE-PROTEIN KINASE 13, COMPND 5 STPK13; COMPND 6 EC: 2.7.11.21; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: MIS18-BINDING PROTEIN 1; COMPND 10 CHAIN: C, D; COMPND 11 SYNONYM: KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG,HSKNL-2,P243; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK1, PLK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 GOLD; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PEC-A-HT-SUMO; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS PLK1, MIS18 COMPLEX, CENTROMERE, CHROMOSOME MIS SEGREGATION, CELL KEYWDS 2 CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR A.A.JEYAPRAKASH,B.MEDINA-PRITCHARD REVDAT 1 21-AUG-24 8S31 0 JRNL AUTH A.A.JEYAPRAKASH,B.MEDINA-PRITCHARD JRNL TITL PLK1-MEDIATED PHOSPHORYLATION CASCADE ACTIVATES MIS18 JRNL TITL 2 COMPLEX TO ENSURE CENTROMERE INHERITANCE JRNL REF SCIENCE 2024 JRNL REFN ESSN 1095-9203 JRNL DOI 10.1126/SCIENCE.ADO8270 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.08 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 37892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 2001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.0800 - 5.1400 1.00 2797 158 0.1934 0.1995 REMARK 3 2 5.1400 - 4.0800 1.00 2668 148 0.1549 0.1857 REMARK 3 3 4.0800 - 3.5700 1.00 2603 145 0.1669 0.2026 REMARK 3 4 3.5700 - 3.2400 1.00 2592 148 0.1934 0.2181 REMARK 3 5 3.2400 - 3.0100 1.00 2585 142 0.2064 0.2341 REMARK 3 6 3.0100 - 2.8300 1.00 2566 139 0.2249 0.2601 REMARK 3 7 2.8300 - 2.6900 1.00 2542 146 0.2219 0.2664 REMARK 3 8 2.6900 - 2.5700 1.00 2552 142 0.2310 0.2538 REMARK 3 9 2.5700 - 2.4700 1.00 2565 141 0.2161 0.2849 REMARK 3 10 2.4700 - 2.3900 1.00 2541 143 0.2249 0.2434 REMARK 3 11 2.3900 - 2.3100 1.00 2514 135 0.2178 0.2283 REMARK 3 12 2.3100 - 2.2500 1.00 2567 145 0.2237 0.2603 REMARK 3 13 2.2500 - 2.1900 1.00 2544 143 0.2079 0.2585 REMARK 3 14 2.1900 - 2.1340 0.89 2255 126 0.2370 0.3019 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.223 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.254 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.68 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3878 REMARK 3 ANGLE : 1.266 5250 REMARK 3 CHIRALITY : 0.061 588 REMARK 3 PLANARITY : 0.008 664 REMARK 3 DIHEDRAL : 10.034 532 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 373 THROUGH 444 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.3891 17.7554 38.8889 REMARK 3 T TENSOR REMARK 3 T11: 0.2986 T22: 0.2193 REMARK 3 T33: 0.3147 T12: 0.0258 REMARK 3 T13: 0.0257 T23: -0.0477 REMARK 3 L TENSOR REMARK 3 L11: 2.4727 L22: 1.2324 REMARK 3 L33: 1.5967 L12: 1.1421 REMARK 3 L13: 1.3011 L23: 0.2065 REMARK 3 S TENSOR REMARK 3 S11: 0.0783 S12: 0.1269 S13: -0.4257 REMARK 3 S21: 0.0405 S22: 0.0852 S23: -0.1095 REMARK 3 S31: 0.2169 S32: 0.0406 S33: -0.1982 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 445 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.1941 34.4956 48.5807 REMARK 3 T TENSOR REMARK 3 T11: 0.2187 T22: 0.1569 REMARK 3 T33: 0.1707 T12: 0.0021 REMARK 3 T13: -0.0304 T23: -0.0171 REMARK 3 L TENSOR REMARK 3 L11: 8.0420 L22: 4.4197 REMARK 3 L33: 5.8017 L12: -0.9981 REMARK 3 L13: -1.6268 L23: 0.6752 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: -0.1365 S13: 0.0534 REMARK 3 S21: 0.0018 S22: 0.0562 S23: -0.0121 REMARK 3 S31: -0.2426 S32: -0.0809 S33: -0.0131 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 490 THROUGH 594 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.1894 15.1644 36.7388 REMARK 3 T TENSOR REMARK 3 T11: 0.3124 T22: 0.2132 REMARK 3 T33: 0.2789 T12: 0.0153 REMARK 3 T13: 0.0116 T23: -0.0361 REMARK 3 L TENSOR REMARK 3 L11: 3.3794 L22: 1.6180 REMARK 3 L33: 2.2283 L12: 1.2181 REMARK 3 L13: 1.2643 L23: 0.7116 REMARK 3 S TENSOR REMARK 3 S11: 0.0779 S12: 0.2547 S13: -0.3935 REMARK 3 S21: -0.0679 S22: 0.1385 S23: -0.2255 REMARK 3 S31: 0.3040 S32: 0.1781 S33: -0.2147 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 373 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.1746 68.1909 22.5304 REMARK 3 T TENSOR REMARK 3 T11: 0.4410 T22: 0.2803 REMARK 3 T33: 0.2883 T12: -0.0867 REMARK 3 T13: 0.0084 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 2.5050 L22: 1.5344 REMARK 3 L33: 3.0330 L12: 0.0709 REMARK 3 L13: 1.7445 L23: -0.0019 REMARK 3 S TENSOR REMARK 3 S11: -0.0830 S12: -0.2170 S13: -0.0526 REMARK 3 S21: 0.1392 S22: 0.0782 S23: 0.1088 REMARK 3 S31: -0.2702 S32: -0.1977 S33: 0.0135 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 406 THROUGH 444 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2600 48.7603 2.7655 REMARK 3 T TENSOR REMARK 3 T11: 0.3774 T22: 0.3169 REMARK 3 T33: 0.3475 T12: -0.1391 REMARK 3 T13: -0.0177 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 0.2975 L22: 3.3030 REMARK 3 L33: 2.5282 L12: -0.7182 REMARK 3 L13: -0.0439 L23: 2.1179 REMARK 3 S TENSOR REMARK 3 S11: 0.0254 S12: -0.0240 S13: -0.2407 REMARK 3 S21: 0.0425 S22: 0.0995 S23: -0.0120 REMARK 3 S31: 0.1830 S32: 0.0929 S33: -0.1136 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 445 THROUGH 469 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4462 52.4028 -10.5528 REMARK 3 T TENSOR REMARK 3 T11: 0.5892 T22: 0.3676 REMARK 3 T33: 0.3261 T12: -0.1992 REMARK 3 T13: 0.0872 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 5.3949 L22: 6.7360 REMARK 3 L33: 3.4424 L12: -5.8450 REMARK 3 L13: 1.1241 L23: -1.8453 REMARK 3 S TENSOR REMARK 3 S11: 0.1507 S12: 0.3502 S13: 0.6906 REMARK 3 S21: -0.6425 S22: -0.0509 S23: -0.4791 REMARK 3 S31: -0.0292 S32: 0.1984 S33: -0.1152 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 470 THROUGH 489 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4671 41.4142 -4.0164 REMARK 3 T TENSOR REMARK 3 T11: 0.3313 T22: 0.2478 REMARK 3 T33: 0.3188 T12: -0.1328 REMARK 3 T13: -0.0362 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 5.6532 L22: 6.1054 REMARK 3 L33: 5.7578 L12: 0.3042 REMARK 3 L13: -1.8583 L23: 1.1368 REMARK 3 S TENSOR REMARK 3 S11: 0.1173 S12: 0.1467 S13: -0.3429 REMARK 3 S21: 0.0964 S22: -0.0491 S23: -0.1001 REMARK 3 S31: 0.1893 S32: -0.3045 S33: 0.0781 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 490 THROUGH 499 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2766 55.2498 10.9355 REMARK 3 T TENSOR REMARK 3 T11: 0.4050 T22: 0.3941 REMARK 3 T33: 0.3957 T12: -0.1800 REMARK 3 T13: 0.0614 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 0.2622 L22: 8.0900 REMARK 3 L33: 1.1174 L12: 0.7507 REMARK 3 L13: 0.4593 L23: -0.0470 REMARK 3 S TENSOR REMARK 3 S11: 0.0972 S12: 0.2598 S13: -0.0140 REMARK 3 S21: 0.4369 S22: -0.1962 S23: 1.1057 REMARK 3 S31: 0.0745 S32: -0.7974 S33: -0.0125 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 500 THROUGH 510 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.3099 65.0929 -0.4364 REMARK 3 T TENSOR REMARK 3 T11: 0.4464 T22: 0.3458 REMARK 3 T33: 0.4172 T12: -0.1842 REMARK 3 T13: 0.0112 T23: -0.0397 REMARK 3 L TENSOR REMARK 3 L11: 0.6382 L22: 5.6423 REMARK 3 L33: 1.7894 L12: -1.4552 REMARK 3 L13: 0.6848 L23: -0.2528 REMARK 3 S TENSOR REMARK 3 S11: -0.2861 S12: 0.1947 S13: -0.0550 REMARK 3 S21: -0.2747 S22: 0.2807 S23: 0.5889 REMARK 3 S31: -0.1837 S32: -0.3212 S33: 0.0443 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 511 THROUGH 558 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6858 54.7390 14.8149 REMARK 3 T TENSOR REMARK 3 T11: 0.3477 T22: 0.2349 REMARK 3 T33: 0.2327 T12: -0.1376 REMARK 3 T13: -0.0039 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 3.2711 L22: 4.0269 REMARK 3 L33: 3.0552 L12: -0.4603 REMARK 3 L13: 0.1589 L23: 1.5397 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: -0.1541 S13: -0.0857 REMARK 3 S21: 0.3639 S22: 0.0824 S23: 0.1375 REMARK 3 S31: 0.2771 S32: -0.1501 S33: -0.0876 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 559 THROUGH 594 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.0179 62.1141 20.6500 REMARK 3 T TENSOR REMARK 3 T11: 0.3888 T22: 0.2679 REMARK 3 T33: 0.2737 T12: -0.1177 REMARK 3 T13: -0.0141 T23: -0.0291 REMARK 3 L TENSOR REMARK 3 L11: 4.8625 L22: 3.2556 REMARK 3 L33: 3.6487 L12: -1.8927 REMARK 3 L13: -0.3358 L23: 1.0561 REMARK 3 S TENSOR REMARK 3 S11: 0.0432 S12: -0.1755 S13: -0.0313 REMARK 3 S21: 0.2370 S22: 0.0398 S23: -0.0057 REMARK 3 S31: 0.0937 S32: -0.1956 S33: -0.1283 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : ens_1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "A" and (resid 368 through 419 or REMARK 3 (resid 420 and (name N or name CA or name REMARK 3 C or name O or name CB )) or resid 421 REMARK 3 through 455 or (resid 456 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 457 through 594)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "B" and ((resid 368 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 369 through 594)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : ens_2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "C" and ((resid -1 and (name N or REMARK 3 name CA or name C or name O or name CB )) REMARK 3 or resid 0 through 6)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: NULL REMARK 3 SELECTION : (chain "D" and resid -1 through 6) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S31 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136680. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.67021 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37897 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.134 REMARK 200 RESOLUTION RANGE LOW (A) : 29.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 10.00 REMARK 200 R MERGE (I) : 0.10430 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.7900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.72290 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.850 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.83 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES (PH 6.0), 20 MM SODIUM REMARK 280 OXALATE, 1.2 M SODIUM MALONATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 169.69067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 84.84533 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 84.84533 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 169.69067 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 362 REMARK 465 SER A 363 REMARK 465 MET A 364 REMARK 465 GLU A 365 REMARK 465 THR A 366 REMARK 465 GLY A 367 REMARK 465 SER A 595 REMARK 465 ALA A 596 REMARK 465 SER A 597 REMARK 465 ASN A 598 REMARK 465 ARG A 599 REMARK 465 LEU A 600 REMARK 465 LYS A 601 REMARK 465 ALA A 602 REMARK 465 SER A 603 REMARK 465 ARG B 362 REMARK 465 SER B 363 REMARK 465 MET B 364 REMARK 465 GLU B 365 REMARK 465 THR B 366 REMARK 465 GLY B 367 REMARK 465 SER B 595 REMARK 465 ALA B 596 REMARK 465 SER B 597 REMARK 465 ASN B 598 REMARK 465 ARG B 599 REMARK 465 LEU B 600 REMARK 465 LYS B 601 REMARK 465 ALA B 602 REMARK 465 SER B 603 REMARK 465 LYS C -2 REMARK 465 THR C 7 REMARK 465 GLU C 8 REMARK 465 LYS D -2 REMARK 465 GLU D 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 368 CG CD OE1 OE2 REMARK 470 GLN A 536 CG CD OE1 NE2 REMARK 470 LYS A 574 CG CD CE NZ REMARK 470 LYS B 420 CG CD CE NZ REMARK 470 ARG B 456 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 536 CG CD OE1 NE2 REMARK 470 LYS B 574 CG CD CE NZ REMARK 470 ASN D -1 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 369 CB VAL A 369 CG1 0.141 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 589 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 LYS A 589 CB - CG - CD ANGL. DEV. = -24.3 DEGREES REMARK 500 LYS A 589 CG - CD - CE ANGL. DEV. = 22.3 DEGREES REMARK 500 ARG B 518 CB - CG - CD ANGL. DEV. = -20.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 449 -41.26 -135.72 REMARK 500 ASP B 449 -39.38 -137.94 REMARK 500 ASP B 457 -28.36 -38.26 REMARK 500 LEU B 505 -14.44 107.48 REMARK 500 ALA B 506 -64.15 -101.63 REMARK 500 ARG B 507 139.35 68.99 REMARK 500 SER D 3 -168.51 -73.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 8S31 A 365 603 UNP P53350 PLK1_HUMAN 365 603 DBREF 8S31 B 365 603 UNP P53350 PLK1_HUMAN 365 603 DBREF 8S31 C -2 8 UNP Q6P0N0 M18BP_HUMAN 72 82 DBREF 8S31 D -2 8 UNP Q6P0N0 M18BP_HUMAN 72 82 SEQADV 8S31 ARG A 362 UNP P53350 EXPRESSION TAG SEQADV 8S31 SER A 363 UNP P53350 EXPRESSION TAG SEQADV 8S31 MET A 364 UNP P53350 EXPRESSION TAG SEQADV 8S31 ARG B 362 UNP P53350 EXPRESSION TAG SEQADV 8S31 SER B 363 UNP P53350 EXPRESSION TAG SEQADV 8S31 MET B 364 UNP P53350 EXPRESSION TAG SEQRES 1 A 242 ARG SER MET GLU THR GLY GLU VAL VAL ASP CYS HIS LEU SEQRES 2 A 242 SER ASP MET LEU GLN GLN LEU HIS SER VAL ASN ALA SER SEQRES 3 A 242 LYS PRO SER GLU ARG GLY LEU VAL ARG GLN GLU GLU ALA SEQRES 4 A 242 GLU ASP PRO ALA CYS ILE PRO ILE PHE TRP VAL SER LYS SEQRES 5 A 242 TRP VAL ASP TYR SER ASP LYS TYR GLY LEU GLY TYR GLN SEQRES 6 A 242 LEU CYS ASP ASN SER VAL GLY VAL LEU PHE ASN ASP SER SEQRES 7 A 242 THR ARG LEU ILE LEU TYR ASN ASP GLY ASP SER LEU GLN SEQRES 8 A 242 TYR ILE GLU ARG ASP GLY THR GLU SER TYR LEU THR VAL SEQRES 9 A 242 SER SER HIS PRO ASN SER LEU MET LYS LYS ILE THR LEU SEQRES 10 A 242 LEU LYS TYR PHE ARG ASN TYR MET SER GLU HIS LEU LEU SEQRES 11 A 242 LYS ALA GLY ALA ASN ILE THR PRO ARG GLU GLY ASP GLU SEQRES 12 A 242 LEU ALA ARG LEU PRO TYR LEU ARG THR TRP PHE ARG THR SEQRES 13 A 242 ARG SER ALA ILE ILE LEU HIS LEU SER ASN GLY SER VAL SEQRES 14 A 242 GLN ILE ASN PHE PHE GLN ASP HIS THR LYS LEU ILE LEU SEQRES 15 A 242 CYS PRO LEU MET ALA ALA VAL THR TYR ILE ASP GLU LYS SEQRES 16 A 242 ARG ASP PHE ARG THR TYR ARG LEU SER LEU LEU GLU GLU SEQRES 17 A 242 TYR GLY CYS CYS LYS GLU LEU ALA SER ARG LEU ARG TYR SEQRES 18 A 242 ALA ARG THR MET VAL ASP LYS LEU LEU SER SER ARG SER SEQRES 19 A 242 ALA SER ASN ARG LEU LYS ALA SER SEQRES 1 B 242 ARG SER MET GLU THR GLY GLU VAL VAL ASP CYS HIS LEU SEQRES 2 B 242 SER ASP MET LEU GLN GLN LEU HIS SER VAL ASN ALA SER SEQRES 3 B 242 LYS PRO SER GLU ARG GLY LEU VAL ARG GLN GLU GLU ALA SEQRES 4 B 242 GLU ASP PRO ALA CYS ILE PRO ILE PHE TRP VAL SER LYS SEQRES 5 B 242 TRP VAL ASP TYR SER ASP LYS TYR GLY LEU GLY TYR GLN SEQRES 6 B 242 LEU CYS ASP ASN SER VAL GLY VAL LEU PHE ASN ASP SER SEQRES 7 B 242 THR ARG LEU ILE LEU TYR ASN ASP GLY ASP SER LEU GLN SEQRES 8 B 242 TYR ILE GLU ARG ASP GLY THR GLU SER TYR LEU THR VAL SEQRES 9 B 242 SER SER HIS PRO ASN SER LEU MET LYS LYS ILE THR LEU SEQRES 10 B 242 LEU LYS TYR PHE ARG ASN TYR MET SER GLU HIS LEU LEU SEQRES 11 B 242 LYS ALA GLY ALA ASN ILE THR PRO ARG GLU GLY ASP GLU SEQRES 12 B 242 LEU ALA ARG LEU PRO TYR LEU ARG THR TRP PHE ARG THR SEQRES 13 B 242 ARG SER ALA ILE ILE LEU HIS LEU SER ASN GLY SER VAL SEQRES 14 B 242 GLN ILE ASN PHE PHE GLN ASP HIS THR LYS LEU ILE LEU SEQRES 15 B 242 CYS PRO LEU MET ALA ALA VAL THR TYR ILE ASP GLU LYS SEQRES 16 B 242 ARG ASP PHE ARG THR TYR ARG LEU SER LEU LEU GLU GLU SEQRES 17 B 242 TYR GLY CYS CYS LYS GLU LEU ALA SER ARG LEU ARG TYR SEQRES 18 B 242 ALA ARG THR MET VAL ASP LYS LEU LEU SER SER ARG SER SEQRES 19 B 242 ALA SER ASN ARG LEU LYS ALA SER SEQRES 1 C 11 LYS ASN ILE PHE GLN SER TPO MET LEU THR GLU SEQRES 1 D 11 LYS ASN ILE PHE GLN SER TPO MET LEU THR GLU MODRES 8S31 TPO C 4 THR MODIFIED RESIDUE MODRES 8S31 TPO D 4 THR MODIFIED RESIDUE HET TPO C 4 11 HET TPO D 4 11 HETNAM TPO PHOSPHOTHREONINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 3 TPO 2(C4 H10 N O6 P) FORMUL 5 HOH *211(H2 O) HELIX 1 AA1 VAL A 369 SER A 387 1 19 HELIX 2 AA2 LYS A 388 ARG A 392 5 5 HELIX 3 AA3 ARG A 396 GLU A 401 5 6 HELIX 4 AA4 ASP A 402 ILE A 406 5 5 HELIX 5 AA5 PRO A 469 SER A 471 5 3 HELIX 6 AA6 LEU A 472 LEU A 490 1 19 HELIX 7 AA7 LEU A 564 GLY A 571 1 8 HELIX 8 AA8 CYS A 573 ARG A 594 1 22 HELIX 9 AA9 VAL B 369 SER B 387 1 19 HELIX 10 AB1 LYS B 388 ARG B 392 5 5 HELIX 11 AB2 ARG B 396 GLU B 401 5 6 HELIX 12 AB3 ASP B 402 ILE B 406 5 5 HELIX 13 AB4 PRO B 469 SER B 471 5 3 HELIX 14 AB5 LEU B 472 LEU B 490 1 19 HELIX 15 AB6 LEU B 564 GLY B 571 1 8 HELIX 16 AB7 CYS B 573 ARG B 594 1 22 SHEET 1 AA1 7 GLU A 460 THR A 464 0 SHEET 2 AA1 7 SER A 450 ILE A 454 -1 N LEU A 451 O LEU A 463 SHEET 3 AA1 7 ARG A 441 LEU A 444 -1 N ARG A 441 O ILE A 454 SHEET 4 AA1 7 VAL A 432 PHE A 436 -1 N VAL A 432 O LEU A 444 SHEET 5 AA1 7 GLY A 422 LEU A 427 -1 N LEU A 423 O LEU A 435 SHEET 6 AA1 7 VAL A 411 ASP A 416 -1 N VAL A 415 O GLY A 424 SHEET 7 AA1 7 PHE C 1 GLN C 2 -1 O PHE C 1 N ASP A 416 SHEET 1 AA2 6 LEU A 511 ARG A 516 0 SHEET 2 AA2 6 ALA A 520 LEU A 525 -1 O ILE A 522 N PHE A 515 SHEET 3 AA2 6 VAL A 530 PHE A 534 -1 O GLN A 531 N LEU A 523 SHEET 4 AA2 6 LYS A 540 CYS A 544 -1 O LEU A 543 N VAL A 530 SHEET 5 AA2 6 ALA A 549 ILE A 553 -1 O THR A 551 N ILE A 542 SHEET 6 AA2 6 PHE A 559 ARG A 563 -1 O ARG A 560 N TYR A 552 SHEET 1 AA3 7 GLU B 460 THR B 464 0 SHEET 2 AA3 7 SER B 450 ILE B 454 -1 N LEU B 451 O LEU B 463 SHEET 3 AA3 7 ARG B 441 LEU B 444 -1 N ARG B 441 O ILE B 454 SHEET 4 AA3 7 VAL B 432 PHE B 436 -1 N VAL B 432 O LEU B 444 SHEET 5 AA3 7 GLY B 422 LEU B 427 -1 N TYR B 425 O GLY B 433 SHEET 6 AA3 7 VAL B 411 ASP B 416 -1 N VAL B 415 O GLY B 424 SHEET 7 AA3 7 PHE D 1 GLN D 2 -1 O PHE D 1 N ASP B 416 SHEET 1 AA4 6 LEU B 511 ARG B 516 0 SHEET 2 AA4 6 ALA B 520 LEU B 525 -1 O ILE B 522 N PHE B 515 SHEET 3 AA4 6 VAL B 530 PHE B 534 -1 O GLN B 531 N LEU B 523 SHEET 4 AA4 6 LYS B 540 CYS B 544 -1 O LEU B 543 N VAL B 530 SHEET 5 AA4 6 ALA B 549 ILE B 553 -1 O ILE B 553 N LYS B 540 SHEET 6 AA4 6 PHE B 559 ARG B 563 -1 O TYR B 562 N VAL B 550 LINK C SER C 3 N TPO C 4 1555 1555 1.33 LINK C TPO C 4 N MET C 5 1555 1555 1.33 LINK C SER D 3 N TPO D 4 1555 1555 1.33 LINK C TPO D 4 N MET D 5 1555 1555 1.34 CRYST1 67.147 67.147 254.536 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014893 0.008598 0.000000 0.00000 SCALE2 0.000000 0.017197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003929 0.00000 MTRIX1 1 -0.495155 -0.367964 0.787035 -23.07124 1 MTRIX2 1 -0.868692 0.195078 -0.455323 71.28210 1 MTRIX3 1 0.014009 -0.909146 -0.416241 43.99220 1 MTRIX1 2 -0.481710 -0.387364 0.786069 -22.79673 1 MTRIX2 2 -0.876277 0.202965 -0.436971 70.42335 1 MTRIX3 2 0.009723 -0.899308 -0.437209 44.59861 1