HEADER OXIDOREDUCTASE 20-FEB-24 8S3L TITLE X-RAY CRYSTAL STRUCTURE OF LSAA9A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-BETA-1,4-GLUCANASE D; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ENDOGLUCANASE D,CARBOXYMETHYLCELLULASE D,CELLULASE D; COMPND 5 EC: 3.2.1.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PANUS SIMILIS; SOURCE 3 ORGANISM_TAXID: 292560; SOURCE 4 EXPRESSION_SYSTEM: ASPERGILLUS ORYZAE; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 5062 KEYWDS LPMO, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.E.H.FRANDSEN,V.DI DOMENICO,L.LO LEGGIO REVDAT 2 24-SEP-25 8S3L 1 JRNL REVDAT 1 05-MAR-25 8S3L 0 JRNL AUTH V.DI DOMENICO,Y.THEIBICH,S.BRANDER,J.G.BERRIN,K.S.JOHANSEN, JRNL AUTH 2 K.E.H.FRANDSEN,L.LO LEGGIO JRNL TITL ANIONS AND CITRATE INHIBIT LSAA9A, A LYTIC POLYSACCHARIDE JRNL TITL 2 MONOOXYGENASE (LPMO). JRNL REF FEBS J. V. 292 4375 2025 JRNL REFN ISSN 1742-464X JRNL PMID 40424050 JRNL DOI 10.1111/FEBS.70138 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0405 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 73.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 9820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.500 REMARK 3 FREE R VALUE TEST SET COUNT : 573 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 722 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.99 REMARK 3 BIN R VALUE (WORKING SET) : 0.3580 REMARK 3 BIN FREE R VALUE SET COUNT : 51 REMARK 3 BIN FREE R VALUE : 0.3700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1788 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 61 REMARK 3 SOLVENT ATOMS : 44 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.507 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.316 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.739 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.915 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1965 ; 0.121 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1712 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2704 ; 1.381 ; 1.658 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3964 ; 0.406 ; 1.568 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ; 7.559 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 7 ; 3.688 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 247 ;12.172 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 315 ; 0.050 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2287 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 435 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 957 ; 2.662 ; 4.132 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 957 ; 2.661 ; 4.132 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1200 ; 4.160 ; 7.427 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1201 ; 4.158 ; 7.433 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 994 ; 2.434 ; 4.200 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 995 ; 2.432 ; 4.200 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1499 ; 3.845 ; 7.689 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2114 ; 6.041 ;39.270 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2107 ; 6.052 ;39.290 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8S3L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX IV REMARK 200 BEAMLINE : BIOMAX REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10394 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 73.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 4.560 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZED IN 3.5M NACL, 0.1M REMARK 280 CITRATE BUFFER PH 3.5. SOAKED IN 50% (W/V) PEG 6000, BSA 0.8 MG/ REMARK 280 ML, 0.1M CITRATE BUFFER PH 3.5 (5 MICROLITER DROP FOR 3 HOURS), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 63.36000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.36000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 63.36000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.36000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 63.36000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 63.36000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 63.36000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 63.36000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 63.36000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 63.36000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 63.36000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 63.36000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 63.36000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 63.36000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 63.36000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 63.36000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 63.36000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 63.36000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 95.04000 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 31.68000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 31.68000 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 95.04000 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 95.04000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 95.04000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 31.68000 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 31.68000 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 95.04000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 31.68000 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 95.04000 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 31.68000 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 95.04000 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 31.68000 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 31.68000 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 31.68000 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 95.04000 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 31.68000 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 95.04000 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 95.04000 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 95.04000 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 31.68000 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 31.68000 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 95.04000 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 95.04000 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 31.68000 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 31.68000 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 31.68000 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 31.68000 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 95.04000 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 31.68000 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 95.04000 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 31.68000 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 95.04000 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 95.04000 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 95.04000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 176 O HOH A 401 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 19 18.80 56.00 REMARK 500 THR A 40 -75.81 -68.82 REMARK 500 ASN A 42 -162.37 73.26 REMARK 500 HIS A 66 -67.12 -91.38 REMARK 500 ASP A 71 -145.19 -90.24 REMARK 500 ILE A 73 -61.42 84.34 REMARK 500 ALA A 105 -83.83 -91.73 REMARK 500 ASN A 173 -79.36 -93.16 REMARK 500 ALA A 227 144.76 -175.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 223 GLY A 224 -36.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 302 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIC A 1 N REMARK 620 2 HIC A 1 ND1 82.0 REMARK 620 3 HIS A 78 NE2 95.1 157.3 REMARK 620 4 TYR A 164 OH 95.4 88.3 114.4 REMARK 620 5 CL A 301 CL 163.8 90.5 86.3 98.7 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8S3F RELATED DB: PDB DBREF1 8S3L A 1 235 UNP A0A0S2GKZ1_9APHY DBREF2 8S3L A A0A0S2GKZ1 20 254 SEQRES 1 A 235 HIC THR LEU VAL TRP GLY VAL TRP VAL ASN GLY VAL ASP SEQRES 2 A 235 GLN GLY ASP GLY ARG ASN ILE TYR ILE ARG SER PRO PRO SEQRES 3 A 235 ASN ASN ASN PRO VAL LYS ASN LEU THR SER PRO ASP MET SEQRES 4 A 235 THR CYS ASN VAL ASP ASN ARG VAL VAL PRO LYS SER VAL SEQRES 5 A 235 PRO VAL ASN ALA GLY ASP THR LEU THR PHE GLU TRP TYR SEQRES 6 A 235 HIS ASN THR ARG ASP ASP ASP ILE ILE ALA SER SER HIS SEQRES 7 A 235 HIS GLY PRO ILE ALA VAL TYR ILE ALA PRO ALA ALA SER SEQRES 8 A 235 ASN GLY GLN GLY ASN VAL TRP VAL LYS LEU PHE GLU ASP SEQRES 9 A 235 ALA TYR ASN VAL THR ASN SER THR TRP ALA VAL ASP ARG SEQRES 10 A 235 LEU ILE THR ALA HIS GLY GLN HIS SER VAL VAL VAL PRO SEQRES 11 A 235 HIS VAL ALA PRO GLY ASP TYR LEU PHE ARG ALA GLU ILE SEQRES 12 A 235 ILE ALA LEU HIS GLU ALA ASP SER LEU TYR SER GLN ASN SEQRES 13 A 235 PRO ILE ARG GLY ALA GLN PHE TYR ILE SER CYS ALA GLN SEQRES 14 A 235 ILE THR ILE ASN SER SER ASP ASP SER THR PRO LEU PRO SEQRES 15 A 235 ALA GLY VAL PRO PHE PRO GLY ALA TYR THR ASP SER THR SEQRES 16 A 235 PRO GLY ILE GLN PHE ASN ILE TYR THR THR PRO ALA THR SEQRES 17 A 235 SER TYR VAL ALA PRO PRO PRO SER VAL TRP SER GLY ALA SEQRES 18 A 235 LEU GLY GLY SER ILE ALA GLN VAL GLY ASP ALA SER LEU SEQRES 19 A 235 GLU MODRES 8S3L HIC A 1 HIS MODIFIED RESIDUE HET HIC A 1 11 HET BGC B 1 12 HET BGC B 2 11 HET BGC B 3 11 HET BGC B 4 11 HET CL A 301 1 HET CU A 302 1 HET NAG A 303 14 HETNAM HIC 4-METHYL-HISTIDINE HETNAM BGC BETA-D-GLUCOPYRANOSE HETNAM CL CHLORIDE ION HETNAM CU COPPER (II) ION HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN BGC BETA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 HIC C7 H11 N3 O2 FORMUL 2 BGC 4(C6 H12 O6) FORMUL 3 CL CL 1- FORMUL 4 CU CU 2+ FORMUL 5 NAG C8 H15 N O6 FORMUL 6 HOH *44(H2 O) HELIX 1 AA1 PRO A 37 ASN A 42 1 6 HELIX 2 AA2 ALA A 90 ASN A 92 5 3 HELIX 3 AA3 ALA A 114 ALA A 121 1 8 HELIX 4 AA4 PRO A 206 TYR A 210 5 5 HELIX 5 AA5 ASP A 231 GLU A 235 5 5 SHEET 1 AA1 5 VAL A 12 ASP A 16 0 SHEET 2 AA1 5 LEU A 3 VAL A 9 -1 N VAL A 7 O GLN A 14 SHEET 3 AA1 5 THR A 59 TYR A 65 -1 O GLU A 63 N TRP A 5 SHEET 4 AA1 5 GLN A 124 VAL A 128 -1 O HIS A 125 N PHE A 62 SHEET 5 AA1 5 GLY A 224 SER A 225 -1 O SER A 225 N SER A 126 SHEET 1 AA2 5 VAL A 52 VAL A 54 0 SHEET 2 AA2 5 GLN A 162 ILE A 172 1 O THR A 171 N VAL A 52 SHEET 3 AA2 5 GLY A 135 ALA A 145 -1 N GLY A 135 O ILE A 172 SHEET 4 AA2 5 ILE A 82 PRO A 88 -1 N ALA A 87 O LEU A 138 SHEET 5 AA2 5 VAL A 99 ASP A 104 -1 O LEU A 101 N VAL A 84 SHEET 1 AA3 2 TYR A 106 ASN A 107 0 SHEET 2 AA3 2 THR A 112 TRP A 113 -1 O THR A 112 N ASN A 107 SSBOND 1 CYS A 41 CYS A 167 1555 1555 2.04 LINK C HIC A 1 N THR A 2 1555 1555 1.34 LINK ND2 ASN A 33 C1 NAG A 303 1555 1555 1.45 LINK O4 BGC B 1 C1 BGC B 2 1555 1555 1.44 LINK O4 BGC B 2 C1 BGC B 3 1555 1555 1.43 LINK O4 BGC B 3 C1 BGC B 4 1555 1555 1.43 LINK N HIC A 1 CU CU A 302 1555 1555 2.19 LINK ND1 HIC A 1 CU CU A 302 1555 1555 1.96 LINK NE2 HIS A 78 CU CU A 302 1555 1555 1.98 LINK OH TYR A 164 CU CU A 302 1555 1555 2.47 LINK CL CL A 301 CU CU A 302 1555 1555 2.37 CISPEP 1 PHE A 187 PRO A 188 0 -1.70 CISPEP 2 PRO A 214 PRO A 215 0 7.81 CRYST1 126.720 126.720 126.720 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007891 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007891 0.00000 CONECT 1 2 1871 CONECT 2 1 3 5 CONECT 3 2 4 12 CONECT 4 3 CONECT 5 2 6 CONECT 6 5 7 8 CONECT 7 6 9 1871 CONECT 8 6 10 CONECT 9 7 10 CONECT 10 8 9 11 CONECT 11 10 CONECT 12 3 CONECT 264 1872 CONECT 321 1330 CONECT 630 1871 CONECT 1310 1871 CONECT 1330 321 CONECT 1825 1826 1830 1832 CONECT 1826 1825 1827 1833 CONECT 1827 1826 1828 1834 CONECT 1828 1827 1829 1835 CONECT 1829 1828 1836 CONECT 1830 1825 1831 1835 CONECT 1831 1830 CONECT 1832 1825 CONECT 1833 1826 CONECT 1834 1827 1842 CONECT 1835 1828 1830 CONECT 1836 1829 CONECT 1837 1838 1842 1843 CONECT 1838 1837 1839 1844 CONECT 1839 1838 1840 1845 CONECT 1840 1839 1841 1846 CONECT 1841 1840 1847 CONECT 1842 1834 1837 1846 CONECT 1843 1837 CONECT 1844 1838 CONECT 1845 1839 1853 CONECT 1846 1840 1842 CONECT 1847 1841 CONECT 1848 1849 1853 1854 CONECT 1849 1848 1850 1855 CONECT 1850 1849 1851 1856 CONECT 1851 1850 1852 1857 CONECT 1852 1851 1858 CONECT 1853 1845 1848 1857 CONECT 1854 1848 CONECT 1855 1849 CONECT 1856 1850 1864 CONECT 1857 1851 1853 CONECT 1858 1852 CONECT 1859 1860 1864 1865 CONECT 1860 1859 1861 1866 CONECT 1861 1860 1862 1867 CONECT 1862 1861 1863 1868 CONECT 1863 1862 1869 CONECT 1864 1856 1859 1868 CONECT 1865 1859 CONECT 1866 1860 CONECT 1867 1861 CONECT 1868 1862 1864 CONECT 1869 1863 CONECT 1870 1871 CONECT 1871 1 7 630 1310 CONECT 1871 1870 CONECT 1872 264 1873 1883 CONECT 1873 1872 1874 1880 CONECT 1874 1873 1875 1881 CONECT 1875 1874 1876 1882 CONECT 1876 1875 1877 1883 CONECT 1877 1876 1884 CONECT 1878 1879 1880 1885 CONECT 1879 1878 CONECT 1880 1873 1878 CONECT 1881 1874 CONECT 1882 1875 CONECT 1883 1872 1876 CONECT 1884 1877 CONECT 1885 1878 MASTER 381 0 8 5 12 0 0 6 1893 1 79 19 END