HEADER PROTEIN BINDING 21-FEB-24 8S4A TITLE CDAA-B04 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIADENYLATE CYCLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DAC,CYCLIC-DI-AMP SYNTHASE,C-DI-AMP SYNTHASE,DIADENYLATE COMPND 5 CYCLASE CDAA; COMPND 6 EC: 2.7.7.85; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES; SOURCE 3 ORGANISM_TAXID: 1639; SOURCE 4 GENE: DACA, CDAA, LMO2120; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA PHAGE ECSZW-2; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 2419741 KEYWDS COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR P.NEUMANN,R.FICNER REVDAT 1 19-JUN-24 8S4A 0 JRNL AUTH P.NEUMANN,R.FICNER JRNL TITL CDAA-B04 COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.260 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 31404 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5400 - 4.9600 1.00 2812 149 0.1866 0.1891 REMARK 3 2 4.9600 - 3.9400 1.00 2832 153 0.1432 0.1955 REMARK 3 3 3.9400 - 3.4400 1.00 2801 150 0.1500 0.1982 REMARK 3 4 3.4400 - 3.1200 1.00 2819 143 0.1832 0.2494 REMARK 3 5 3.1200 - 2.9000 0.98 2778 148 0.1947 0.2531 REMARK 3 6 2.9000 - 2.7300 0.82 2308 122 0.2555 0.3603 REMARK 3 7 2.7300 - 2.5900 0.94 2654 135 0.2743 0.3337 REMARK 3 8 2.5900 - 2.4800 0.96 2689 144 0.2888 0.3271 REMARK 3 9 2.4800 - 2.3800 0.95 2707 141 0.2979 0.3014 REMARK 3 10 2.3800 - 2.3000 0.96 2689 145 0.3304 0.3854 REMARK 3 11 2.3000 - 2.2300 0.96 2743 142 0.3377 0.3930 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2394 REMARK 3 ANGLE : 0.534 3233 REMARK 3 CHIRALITY : 0.049 391 REMARK 3 PLANARITY : 0.004 424 REMARK 3 DIHEDRAL : 11.856 913 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 5 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4036 -0.9360 -4.2026 REMARK 3 T TENSOR REMARK 3 T11: 0.5224 T22: 0.4545 REMARK 3 T33: 0.3272 T12: -0.0348 REMARK 3 T13: -0.0294 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.3761 L22: 3.1672 REMARK 3 L33: 2.7860 L12: 1.0148 REMARK 3 L13: -2.1365 L23: 0.4526 REMARK 3 S TENSOR REMARK 3 S11: 0.1191 S12: -0.1470 S13: -0.2317 REMARK 3 S21: 0.5252 S22: -0.1506 S23: 0.0300 REMARK 3 S31: 0.0908 S32: -0.2401 S33: -0.0188 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9710 3.4478 -16.9412 REMARK 3 T TENSOR REMARK 3 T11: 0.2177 T22: 0.2153 REMARK 3 T33: 0.1612 T12: 0.0043 REMARK 3 T13: -0.0084 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 1.5307 L22: 5.8423 REMARK 3 L33: 3.3155 L12: 0.4666 REMARK 3 L13: 0.7838 L23: 0.0128 REMARK 3 S TENSOR REMARK 3 S11: -0.1784 S12: 0.0296 S13: 0.1124 REMARK 3 S21: -0.1500 S22: 0.1307 S23: -0.1529 REMARK 3 S31: -0.2473 S32: -0.0670 S33: 0.0393 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.5629 11.4938 -5.1615 REMARK 3 T TENSOR REMARK 3 T11: 0.5966 T22: 0.3197 REMARK 3 T33: 0.4148 T12: -0.0123 REMARK 3 T13: 0.0072 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.6994 L22: 1.7932 REMARK 3 L33: 4.7859 L12: 1.7083 REMARK 3 L13: -2.3490 L23: -0.1360 REMARK 3 S TENSOR REMARK 3 S11: 0.0680 S12: -0.3203 S13: -0.0118 REMARK 3 S21: 0.8896 S22: -0.0047 S23: 0.3631 REMARK 3 S31: -0.6173 S32: -0.1055 S33: 0.1022 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 5 THROUGH 25 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9623 -22.2761 -25.7901 REMARK 3 T TENSOR REMARK 3 T11: 0.4163 T22: 0.3266 REMARK 3 T33: 0.3801 T12: 0.0175 REMARK 3 T13: 0.0157 T23: 0.0593 REMARK 3 L TENSOR REMARK 3 L11: 8.1132 L22: 4.1707 REMARK 3 L33: 7.5141 L12: 0.0901 REMARK 3 L13: 4.0301 L23: -0.1502 REMARK 3 S TENSOR REMARK 3 S11: -0.1885 S12: 0.5249 S13: 0.0596 REMARK 3 S21: -0.4721 S22: 0.3082 S23: 0.2585 REMARK 3 S31: -0.2887 S32: -0.0878 S33: -0.0930 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 26 THROUGH 44 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4942 -26.3515 -13.0860 REMARK 3 T TENSOR REMARK 3 T11: 0.3442 T22: 0.2682 REMARK 3 T33: 0.2805 T12: -0.0425 REMARK 3 T13: -0.0957 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 4.0480 L22: 3.7031 REMARK 3 L33: 4.8108 L12: -1.3885 REMARK 3 L13: 0.2264 L23: -0.1780 REMARK 3 S TENSOR REMARK 3 S11: -0.0505 S12: -0.5755 S13: -0.0934 REMARK 3 S21: -0.0233 S22: 0.1516 S23: 0.3034 REMARK 3 S31: 0.1864 S32: -0.4825 S33: -0.0909 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 45 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0500 -16.7109 -12.3768 REMARK 3 T TENSOR REMARK 3 T11: 0.1700 T22: 0.2603 REMARK 3 T33: 0.1556 T12: -0.1078 REMARK 3 T13: 0.0618 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 5.3900 L22: 6.1578 REMARK 3 L33: 1.2484 L12: -2.0528 REMARK 3 L13: 2.4613 L23: -0.0713 REMARK 3 S TENSOR REMARK 3 S11: -0.2453 S12: -0.3679 S13: 0.3596 REMARK 3 S21: 1.1418 S22: 0.1249 S23: 0.3796 REMARK 3 S31: 0.1861 S32: -0.6029 S33: -0.2732 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 56 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.8584 -17.4301 -13.6627 REMARK 3 T TENSOR REMARK 3 T11: 0.2578 T22: 0.2868 REMARK 3 T33: 0.3100 T12: -0.0855 REMARK 3 T13: -0.0127 T23: 0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.5816 L22: 6.8448 REMARK 3 L33: 3.1901 L12: 0.4749 REMARK 3 L13: -2.0368 L23: -0.0932 REMARK 3 S TENSOR REMARK 3 S11: 0.0106 S12: -0.2894 S13: 0.0840 REMARK 3 S21: 0.0855 S22: -0.0234 S23: -0.3070 REMARK 3 S31: 0.0602 S32: -0.2074 S33: -0.0520 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 84 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.8503 -33.1934 -8.5642 REMARK 3 T TENSOR REMARK 3 T11: 0.4603 T22: 0.2946 REMARK 3 T33: 0.2928 T12: -0.0648 REMARK 3 T13: -0.0564 T23: 0.0165 REMARK 3 L TENSOR REMARK 3 L11: 1.5838 L22: 5.6168 REMARK 3 L33: 2.8314 L12: -0.4999 REMARK 3 L13: -0.0231 L23: -0.2830 REMARK 3 S TENSOR REMARK 3 S11: -0.0323 S12: -0.3521 S13: -0.1016 REMARK 3 S21: 0.6681 S22: 0.2707 S23: -0.1566 REMARK 3 S31: 0.2476 S32: -0.1621 S33: -0.0937 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 122 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4088 -30.0315 -15.4110 REMARK 3 T TENSOR REMARK 3 T11: 0.4664 T22: 0.3793 REMARK 3 T33: 0.3403 T12: -0.0035 REMARK 3 T13: -0.1144 T23: -0.0424 REMARK 3 L TENSOR REMARK 3 L11: 5.0516 L22: 4.5812 REMARK 3 L33: 4.2763 L12: 0.9180 REMARK 3 L13: -1.8822 L23: -1.3770 REMARK 3 S TENSOR REMARK 3 S11: -0.4194 S12: -0.2607 S13: -0.2120 REMARK 3 S21: 0.8342 S22: 0.4478 S23: -0.8411 REMARK 3 S31: 0.2693 S32: 0.6482 S33: 0.0062 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5898 -36.8999 -17.8954 REMARK 3 T TENSOR REMARK 3 T11: 0.6231 T22: 0.4176 REMARK 3 T33: 0.4901 T12: 0.0832 REMARK 3 T13: -0.1717 T23: -0.0746 REMARK 3 L TENSOR REMARK 3 L11: 1.1214 L22: 2.3647 REMARK 3 L33: 5.7474 L12: -1.5102 REMARK 3 L13: -0.3951 L23: -0.6176 REMARK 3 S TENSOR REMARK 3 S11: 0.0124 S12: -0.1884 S13: -0.4267 REMARK 3 S21: 0.2608 S22: -0.0184 S23: -1.0591 REMARK 3 S31: 1.0650 S32: 0.4178 S33: -0.1999 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 142 THROUGH 157 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.3954 -32.9608 -27.8273 REMARK 3 T TENSOR REMARK 3 T11: 0.5667 T22: 0.3303 REMARK 3 T33: 0.3126 T12: -0.0061 REMARK 3 T13: -0.0073 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 5.5859 L22: 3.9770 REMARK 3 L33: 6.6512 L12: -0.8806 REMARK 3 L13: -1.0941 L23: -0.7762 REMARK 3 S TENSOR REMARK 3 S11: 0.3802 S12: 0.5591 S13: -0.6130 REMARK 3 S21: 0.0355 S22: 0.0590 S23: 0.4085 REMARK 3 S31: 0.1351 S32: -0.6366 S33: -0.3399 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S4A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136784. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96770 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31425 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 45.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.33 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.48600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 3.7 M NACL, 0.1M NA-HEPES PH 8.5 AND 3 REMARK 280 % DMSO, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.85000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.34500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.23000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.34500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.85000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.23000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 PRO A -3 REMARK 465 LEU A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 TYR A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 ARG A 4 REMARK 465 VAL A 156 REMARK 465 THR A 157 REMARK 465 ALA A 158 REMARK 465 LYS A 159 REMARK 465 LYS A 160 REMARK 465 PRO A 161 REMARK 465 SER A 162 REMARK 465 ILE A 163 REMARK 465 PHE A 164 REMARK 465 SER A 165 REMARK 465 LYS A 166 REMARK 465 TRP A 167 REMARK 465 LYS A 168 REMARK 465 GLY A 169 REMARK 465 GLY A 170 REMARK 465 LYS A 171 REMARK 465 SER A 172 REMARK 465 GLU A 173 REMARK 465 GLY B -4 REMARK 465 PRO B -3 REMARK 465 LEU B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 TYR B 1 REMARK 465 GLY B 2 REMARK 465 SER B 3 REMARK 465 ARG B 4 REMARK 465 ALA B 158 REMARK 465 LYS B 159 REMARK 465 LYS B 160 REMARK 465 PRO B 161 REMARK 465 SER B 162 REMARK 465 ILE B 163 REMARK 465 PHE B 164 REMARK 465 SER B 165 REMARK 465 LYS B 166 REMARK 465 TRP B 167 REMARK 465 LYS B 168 REMARK 465 GLY B 169 REMARK 465 GLY B 170 REMARK 465 LYS B 171 REMARK 465 SER B 172 REMARK 465 GLU B 173 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR B 157 OG1 CG2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 TYR A 87 CG CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 36 -121.38 -131.79 REMARK 500 ARG B 36 -118.82 -125.13 REMARK 500 THR B 38 -74.10 -73.52 REMARK 500 ASP B 139 70.46 49.97 REMARK 500 REMARK 500 REMARK: NULL DBREF 8S4A A 1 173 UNP Q8Y5E4 DACA_LISMO 101 273 DBREF 8S4A B 1 173 UNP Q8Y5E4 DACA_LISMO 101 273 SEQADV 8S4A GLY A -4 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8S4A PRO A -3 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8S4A LEU A -2 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8S4A GLY A -1 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8S4A SER A 0 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8S4A GLY B -4 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8S4A PRO B -3 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8S4A LEU B -2 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8S4A GLY B -1 UNP Q8Y5E4 EXPRESSION TAG SEQADV 8S4A SER B 0 UNP Q8Y5E4 EXPRESSION TAG SEQRES 1 A 178 GLY PRO LEU GLY SER TYR GLY SER ARG ILE GLU ARG GLU SEQRES 2 A 178 GLN HIS HIS LEU ILE GLU SER ILE GLU LYS SER THR GLN SEQRES 3 A 178 TYR MET ALA LYS ARG ARG ILE GLY ALA LEU ILE SER VAL SEQRES 4 A 178 ALA ARG ASP THR GLY MET ASP ASP TYR ILE GLU THR GLY SEQRES 5 A 178 ILE PRO LEU ASN ALA LYS ILE SER SER GLN LEU LEU ILE SEQRES 6 A 178 ASN ILE PHE ILE PRO ASN THR PRO LEU HIS ASP GLY ALA SEQRES 7 A 178 VAL ILE ILE LYS GLY ASN GLU ILE ALA SER ALA ALA SER SEQRES 8 A 178 TYR LEU PRO LEU SER ASP SER PRO PHE LEU SER LYS GLU SEQRES 9 A 178 LEU GLY THR ARG HIS ARG ALA ALA LEU GLY ILE SER GLU SEQRES 10 A 178 VAL THR ASP SER ILE THR ILE VAL VAL SER GLU GLU THR SEQRES 11 A 178 GLY GLY ILE SER LEU THR LYS GLY GLY GLU LEU PHE ARG SEQRES 12 A 178 ASP VAL SER GLU GLU GLU LEU HIS LYS ILE LEU LEU LYS SEQRES 13 A 178 GLU LEU VAL THR VAL THR ALA LYS LYS PRO SER ILE PHE SEQRES 14 A 178 SER LYS TRP LYS GLY GLY LYS SER GLU SEQRES 1 B 178 GLY PRO LEU GLY SER TYR GLY SER ARG ILE GLU ARG GLU SEQRES 2 B 178 GLN HIS HIS LEU ILE GLU SER ILE GLU LYS SER THR GLN SEQRES 3 B 178 TYR MET ALA LYS ARG ARG ILE GLY ALA LEU ILE SER VAL SEQRES 4 B 178 ALA ARG ASP THR GLY MET ASP ASP TYR ILE GLU THR GLY SEQRES 5 B 178 ILE PRO LEU ASN ALA LYS ILE SER SER GLN LEU LEU ILE SEQRES 6 B 178 ASN ILE PHE ILE PRO ASN THR PRO LEU HIS ASP GLY ALA SEQRES 7 B 178 VAL ILE ILE LYS GLY ASN GLU ILE ALA SER ALA ALA SER SEQRES 8 B 178 TYR LEU PRO LEU SER ASP SER PRO PHE LEU SER LYS GLU SEQRES 9 B 178 LEU GLY THR ARG HIS ARG ALA ALA LEU GLY ILE SER GLU SEQRES 10 B 178 VAL THR ASP SER ILE THR ILE VAL VAL SER GLU GLU THR SEQRES 11 B 178 GLY GLY ILE SER LEU THR LYS GLY GLY GLU LEU PHE ARG SEQRES 12 B 178 ASP VAL SER GLU GLU GLU LEU HIS LYS ILE LEU LEU LYS SEQRES 13 B 178 GLU LEU VAL THR VAL THR ALA LYS LYS PRO SER ILE PHE SEQRES 14 B 178 SER LYS TRP LYS GLY GLY LYS SER GLU HET AJO A 201 16 HET AJO B 201 16 HET CL B 202 1 HETNAM AJO N~2~-(CYANOMETHYL)-N~2~-METHYL-N-(6-METHYLPYRIDIN-2- HETNAM 2 AJO YL)GLYCINAMIDE HETNAM CL CHLORIDE ION FORMUL 3 AJO 2(C11 H14 N4 O) FORMUL 5 CL CL 1- FORMUL 6 HOH *120(H2 O) HELIX 1 AA1 ILE A 5 ARG A 26 1 22 HELIX 2 AA2 MET A 40 GLU A 45 1 6 HELIX 3 AA3 SER A 55 ILE A 64 1 10 HELIX 4 AA4 GLY A 101 THR A 114 1 14 HELIX 5 AA5 SER A 141 VAL A 154 1 14 HELIX 6 AA6 GLU B 6 ARG B 26 1 21 HELIX 7 AA7 MET B 40 GLU B 45 1 6 HELIX 8 AA8 SER B 55 PHE B 63 1 9 HELIX 9 AA9 GLY B 101 THR B 114 1 14 HELIX 10 AB1 SER B 141 VAL B 154 1 14 SHEET 1 AA1 7 ILE A 48 LYS A 53 0 SHEET 2 AA1 7 GLU A 80 SER A 86 -1 O ILE A 81 N ALA A 52 SHEET 3 AA1 7 ALA A 73 LYS A 77 -1 N ALA A 73 O SER A 86 SHEET 4 AA1 7 ALA A 30 VAL A 34 1 N SER A 33 O VAL A 74 SHEET 5 AA1 7 ILE A 117 VAL A 121 -1 O ILE A 117 N VAL A 34 SHEET 6 AA1 7 ILE A 128 LYS A 132 -1 O SER A 129 N VAL A 120 SHEET 7 AA1 7 GLU A 135 PHE A 137 -1 O PHE A 137 N LEU A 130 SHEET 1 AA2 7 ILE B 48 LYS B 53 0 SHEET 2 AA2 7 GLU B 80 SER B 86 -1 O ALA B 84 N ILE B 48 SHEET 3 AA2 7 ALA B 73 LYS B 77 -1 N ALA B 73 O SER B 86 SHEET 4 AA2 7 ALA B 30 VAL B 34 1 N SER B 33 O VAL B 74 SHEET 5 AA2 7 ILE B 117 VAL B 121 -1 O ILE B 117 N VAL B 34 SHEET 6 AA2 7 ILE B 128 LYS B 132 -1 O SER B 129 N VAL B 120 SHEET 7 AA2 7 GLU B 135 PHE B 137 -1 O PHE B 137 N LEU B 130 CRYST1 41.700 64.460 128.690 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023981 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015513 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007771 0.00000