HEADER DNA BINDING PROTEIN 22-FEB-24 8S4T TITLE DNA BOUND STRUCTURE OF PRGE FROM PLASMID PCF10 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRGE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PRGK; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA; COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 1351; SOURCE 4 GENE: PRGK, PRGE, EGX33_13060, EU507_13905, F6H88_002583, SOURCE 5 FDO46_002730, H9Q64_07920, HRF81_13830, IHC34_002761, KCT30_002803, SOURCE 6 NAG05_14735; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: DNA MOLECULE; SOURCE 12 ORGANISM_TAXID: 2853804 KEYWDS SSB, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.BREIDENSTEIN,R.P.-A.BERNTSSON REVDAT 2 03-JUL-24 8S4T 1 JRNL REVDAT 1 29-MAY-24 8S4T 0 JRNL AUTH A.BREIDENSTEIN,A.LAMY,C.P.BADER,W.S.SUN,P.H.WANROOIJ, JRNL AUTH 2 R.P.BERNTSSON JRNL TITL PRGE: AN OB-FOLD PROTEIN FROM PLASMID PCF10 WITH STRIKING JRNL TITL 2 DIFFERENCES TO PROTOTYPICAL BACTERIAL SSBS. JRNL REF LIFE SCI ALLIANCE V. 7 2024 JRNL REFN ESSN 2575-1077 JRNL PMID 38811160 JRNL DOI 10.26508/LSA.202402693 REMARK 2 REMARK 2 RESOLUTION. 2.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0419 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24963 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.231 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1275 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1778 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.84 REMARK 3 BIN R VALUE (WORKING SET) : 0.4680 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.4920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3372 REMARK 3 NUCLEIC ACID ATOMS : 315 REMARK 3 HETEROGEN ATOMS : 20 REMARK 3 SOLVENT ATOMS : 9 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 73.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.54000 REMARK 3 B22 (A**2) : 1.24000 REMARK 3 B33 (A**2) : -0.70000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.378 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.265 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.327 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 41.065 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3809 ; 0.002 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3389 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5163 ; 0.683 ; 1.679 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7856 ; 0.254 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 405 ; 6.258 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 15 ; 3.091 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 660 ;14.975 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 536 ; 0.035 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4191 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 864 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1629 ; 1.532 ; 5.879 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1629 ; 1.532 ; 5.880 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2031 ; 2.731 ;10.560 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2032 ; 2.731 ;10.563 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2180 ; 1.405 ; 5.958 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2181 ; 1.404 ; 5.959 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3133 ; 2.586 ;10.816 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4090 ; 5.063 ;62.600 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4091 ; 5.063 ;62.610 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 136 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3566 21.1147 3.4860 REMARK 3 T TENSOR REMARK 3 T11: 0.0530 T22: 0.9011 REMARK 3 T33: 0.0182 T12: 0.0208 REMARK 3 T13: 0.0187 T23: 0.0155 REMARK 3 L TENSOR REMARK 3 L11: 2.0955 L22: 1.0434 REMARK 3 L33: 0.7293 L12: 0.6568 REMARK 3 L13: 0.4845 L23: 0.4965 REMARK 3 S TENSOR REMARK 3 S11: -0.0454 S12: -0.2485 S13: -0.1092 REMARK 3 S21: 0.0901 S22: 0.0368 S23: -0.0486 REMARK 3 S31: 0.0280 S32: -0.0927 S33: 0.0086 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 136 REMARK 3 ORIGIN FOR THE GROUP (A): 28.8659 39.9209 24.5688 REMARK 3 T TENSOR REMARK 3 T11: 0.1664 T22: 0.7023 REMARK 3 T33: 0.0675 T12: 0.0899 REMARK 3 T13: -0.0088 T23: -0.1057 REMARK 3 L TENSOR REMARK 3 L11: 2.5348 L22: 1.1020 REMARK 3 L33: 3.2625 L12: -0.0601 REMARK 3 L13: -0.3421 L23: 0.6421 REMARK 3 S TENSOR REMARK 3 S11: -0.1383 S12: -0.3593 S13: 0.3598 REMARK 3 S21: 0.1215 S22: 0.0571 S23: 0.0913 REMARK 3 S31: -0.1397 S32: -0.0849 S33: 0.0811 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 136 REMARK 3 ORIGIN FOR THE GROUP (A): 16.6073 52.8832 52.9814 REMARK 3 T TENSOR REMARK 3 T11: 0.1064 T22: 0.9856 REMARK 3 T33: 0.0426 T12: -0.0445 REMARK 3 T13: 0.0278 T23: -0.1073 REMARK 3 L TENSOR REMARK 3 L11: 2.7872 L22: 1.4848 REMARK 3 L33: 2.0906 L12: -0.4736 REMARK 3 L13: -0.6253 L23: -0.2377 REMARK 3 S TENSOR REMARK 3 S11: -0.2532 S12: 0.4776 S13: -0.2871 REMARK 3 S21: -0.1990 S22: 0.1420 S23: 0.1060 REMARK 3 S31: 0.2458 S32: -0.0821 S33: 0.1112 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 15 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3205 30.6408 28.4824 REMARK 3 T TENSOR REMARK 3 T11: 0.4386 T22: 1.5850 REMARK 3 T33: 0.1578 T12: -0.0229 REMARK 3 T13: 0.1376 T23: -0.0973 REMARK 3 L TENSOR REMARK 3 L11: 1.3147 L22: 0.0445 REMARK 3 L33: 0.0420 L12: -0.1203 REMARK 3 L13: -0.1129 L23: 0.0273 REMARK 3 S TENSOR REMARK 3 S11: -0.2173 S12: -0.6937 S13: 0.2065 REMARK 3 S21: 0.0844 S22: 0.1937 S23: 0.0279 REMARK 3 S31: 0.1323 S32: 0.0134 S33: 0.0236 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8S4T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292132919. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 49.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.77 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.950 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.20.1_4487 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 % POLYETHYLENE GLYCOL 400, 50 MM REMARK 280 MES PH 6.5, 80 MM MAGNESIUM ACETATE, 15 MM MAGNESIUM CHLORIDE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.88800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.92400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.02150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.92400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.88800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.02150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLU A 137 REMARK 465 SER A 138 REMARK 465 ASN A 139 REMARK 465 THR A 140 REMARK 465 GLU A 141 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 TRP A 144 REMARK 465 MET B 0 REMARK 465 GLU B 137 REMARK 465 SER B 138 REMARK 465 ASN B 139 REMARK 465 THR B 140 REMARK 465 GLU B 141 REMARK 465 GLU B 142 REMARK 465 ASP B 143 REMARK 465 TRP B 144 REMARK 465 MET C 0 REMARK 465 GLU C 137 REMARK 465 SER C 138 REMARK 465 ASN C 139 REMARK 465 THR C 140 REMARK 465 GLU C 141 REMARK 465 GLU C 142 REMARK 465 ASP C 143 REMARK 465 TRP C 144 REMARK 465 DA D 16 REMARK 465 DA D 17 REMARK 465 DA D 18 REMARK 465 DA D 19 REMARK 465 DA D 20 REMARK 465 DA D 21 REMARK 465 DA D 22 REMARK 465 DA D 23 REMARK 465 DA D 24 REMARK 465 DA D 25 REMARK 465 DA D 26 REMARK 465 DA D 27 REMARK 465 DA D 28 REMARK 465 DA D 29 REMARK 465 DA D 30 REMARK 465 DA D 31 REMARK 465 DA D 32 REMARK 465 DA D 33 REMARK 465 DA D 34 REMARK 465 DA D 35 REMARK 465 DA D 36 REMARK 465 DA D 37 REMARK 465 DA D 38 REMARK 465 DA D 39 REMARK 465 DA D 40 REMARK 465 DA D 41 REMARK 465 DA D 42 REMARK 465 DA D 43 REMARK 465 DA D 44 REMARK 465 DA D 45 REMARK 465 DA D 46 REMARK 465 DA D 47 REMARK 465 DA D 48 REMARK 465 DA D 49 REMARK 465 DA D 50 REMARK 465 DA D 51 REMARK 465 DA D 52 REMARK 465 DA D 53 REMARK 465 DA D 54 REMARK 465 DA D 55 REMARK 465 DA D 56 REMARK 465 DA D 57 REMARK 465 DA D 58 REMARK 465 DA D 59 REMARK 465 DA D 60 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 5 118.21 -36.57 REMARK 500 GLN A 12 64.26 -111.50 REMARK 500 TYR A 110 118.79 -170.42 REMARK 500 GLN C 12 67.40 -107.51 REMARK 500 TYR C 110 -83.22 -101.87 REMARK 500 LYS C 111 62.95 -109.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8S4S RELATED DB: PDB REMARK 900 8S4S CONTAINS THE APO STRUCTURE OF THE PROTEIN DBREF 8S4T A 2 144 UNP D1LHE9 D1LHE9_ENTFL 2 144 DBREF 8S4T B 2 144 UNP D1LHE9 D1LHE9_ENTFL 2 144 DBREF 8S4T C 2 144 UNP D1LHE9 D1LHE9_ENTFL 2 144 DBREF 8S4T D 1 60 PDB 8S4T 8S4T 1 60 SEQADV 8S4T MET A 0 UNP D1LHE9 INITIATING METHIONINE SEQADV 8S4T SER A 1 UNP D1LHE9 EXPRESSION TAG SEQADV 8S4T MET B 0 UNP D1LHE9 INITIATING METHIONINE SEQADV 8S4T SER B 1 UNP D1LHE9 EXPRESSION TAG SEQADV 8S4T MET C 0 UNP D1LHE9 INITIATING METHIONINE SEQADV 8S4T SER C 1 UNP D1LHE9 EXPRESSION TAG SEQRES 1 A 145 MET SER LYS TYR GLU ARG PRO LEU LYS ARG GLU SER GLN SEQRES 2 A 145 ILE LYS GLU PHE GLU LEU GLY THR HIS ALA ALA VAL ILE SEQRES 3 A 145 GLU LYS VAL GLN LYS LYS ARG SER GLN LYS GLY ASN ASP SEQRES 4 A 145 MET PHE LEU LEU SER LEU LEU GLY LYS SER ASN GLU LYS SEQRES 5 A 145 GLY VAL TYR PHE LEU THR PHE GLY ASN ASP TYR THR GLU SEQRES 6 A 145 ASP ASN LEU ARG TYR ILE LEU ALA SER ILE GLN ASP ASN SEQRES 7 A 145 GLY VAL GLU ILE PRO ASP VAL ASP PHE GLY TYR ASN ARG SEQRES 8 A 145 GLU THR PHE GLU PHE LEU LYS GLY LYS ASP VAL TYR ILE SEQRES 9 A 145 GLN VAL GLU GLU GLN GLU TYR LYS GLY LYS VAL LYS HIS SEQRES 10 A 145 ALA VAL THR ASN PHE LEU THR GLN ASP GLU PHE GLU GLU SEQRES 11 A 145 SER GLU GLU MET GLU PHE SER GLU SER ASN THR GLU GLU SEQRES 12 A 145 ASP TRP SEQRES 1 B 145 MET SER LYS TYR GLU ARG PRO LEU LYS ARG GLU SER GLN SEQRES 2 B 145 ILE LYS GLU PHE GLU LEU GLY THR HIS ALA ALA VAL ILE SEQRES 3 B 145 GLU LYS VAL GLN LYS LYS ARG SER GLN LYS GLY ASN ASP SEQRES 4 B 145 MET PHE LEU LEU SER LEU LEU GLY LYS SER ASN GLU LYS SEQRES 5 B 145 GLY VAL TYR PHE LEU THR PHE GLY ASN ASP TYR THR GLU SEQRES 6 B 145 ASP ASN LEU ARG TYR ILE LEU ALA SER ILE GLN ASP ASN SEQRES 7 B 145 GLY VAL GLU ILE PRO ASP VAL ASP PHE GLY TYR ASN ARG SEQRES 8 B 145 GLU THR PHE GLU PHE LEU LYS GLY LYS ASP VAL TYR ILE SEQRES 9 B 145 GLN VAL GLU GLU GLN GLU TYR LYS GLY LYS VAL LYS HIS SEQRES 10 B 145 ALA VAL THR ASN PHE LEU THR GLN ASP GLU PHE GLU GLU SEQRES 11 B 145 SER GLU GLU MET GLU PHE SER GLU SER ASN THR GLU GLU SEQRES 12 B 145 ASP TRP SEQRES 1 C 145 MET SER LYS TYR GLU ARG PRO LEU LYS ARG GLU SER GLN SEQRES 2 C 145 ILE LYS GLU PHE GLU LEU GLY THR HIS ALA ALA VAL ILE SEQRES 3 C 145 GLU LYS VAL GLN LYS LYS ARG SER GLN LYS GLY ASN ASP SEQRES 4 C 145 MET PHE LEU LEU SER LEU LEU GLY LYS SER ASN GLU LYS SEQRES 5 C 145 GLY VAL TYR PHE LEU THR PHE GLY ASN ASP TYR THR GLU SEQRES 6 C 145 ASP ASN LEU ARG TYR ILE LEU ALA SER ILE GLN ASP ASN SEQRES 7 C 145 GLY VAL GLU ILE PRO ASP VAL ASP PHE GLY TYR ASN ARG SEQRES 8 C 145 GLU THR PHE GLU PHE LEU LYS GLY LYS ASP VAL TYR ILE SEQRES 9 C 145 GLN VAL GLU GLU GLN GLU TYR LYS GLY LYS VAL LYS HIS SEQRES 10 C 145 ALA VAL THR ASN PHE LEU THR GLN ASP GLU PHE GLU GLU SEQRES 11 C 145 SER GLU GLU MET GLU PHE SER GLU SER ASN THR GLU GLU SEQRES 12 C 145 ASP TRP SEQRES 1 D 60 DA DA DA DA DA DA DA DA DA DA DA DA DA SEQRES 2 D 60 DA DA DA DA DA DA DA DA DA DA DA DA DA SEQRES 3 D 60 DA DA DA DA DA DA DA DA DA DA DA DA DA SEQRES 4 D 60 DA DA DA DA DA DA DA DA DA DA DA DA DA SEQRES 5 D 60 DA DA DA DA DA DA DA DA HET PGE A 201 10 HET PGE A 202 10 HETNAM PGE TRIETHYLENE GLYCOL FORMUL 5 PGE 2(C6 H14 O4) FORMUL 7 HOH *9(H2 O) HELIX 1 AA1 TYR A 62 ASN A 77 1 16 HELIX 2 AA2 ASN A 89 LYS A 97 1 9 HELIX 3 AA3 THR A 123 GLU A 132 1 10 HELIX 4 AA4 TYR B 62 ASP B 76 1 15 HELIX 5 AA5 ASN B 89 LYS B 97 1 9 HELIX 6 AA6 THR B 123 GLU B 132 1 10 HELIX 7 AA7 TYR C 62 ASP C 76 1 15 HELIX 8 AA8 ASN C 89 LEU C 96 1 8 HELIX 9 AA9 THR C 123 PHE C 135 1 13 SHEET 1 AA1 5 LYS A 51 THR A 57 0 SHEET 2 AA1 5 ASP A 38 GLY A 46 -1 N LEU A 44 O GLY A 52 SHEET 3 AA1 5 GLY A 19 ARG A 32 -1 N GLN A 29 O LEU A 41 SHEET 4 AA1 5 ASP A 100 TYR A 110 -1 O VAL A 101 N ALA A 23 SHEET 5 AA1 5 LYS A 113 PHE A 121 -1 O ALA A 117 N GLU A 106 SHEET 1 AA2 5 LYS B 51 THR B 57 0 SHEET 2 AA2 5 ASP B 38 LEU B 45 -1 N LEU B 44 O GLY B 52 SHEET 3 AA2 5 GLY B 19 ARG B 32 -1 N GLN B 29 O LEU B 41 SHEET 4 AA2 5 ASP B 100 TYR B 110 -1 O VAL B 101 N ALA B 23 SHEET 5 AA2 5 LYS B 113 PHE B 121 -1 O LYS B 115 N GLN B 108 SHEET 1 AA3 5 LYS C 51 THR C 57 0 SHEET 2 AA3 5 ASP C 38 GLY C 46 -1 N LEU C 44 O GLY C 52 SHEET 3 AA3 5 GLY C 19 ARG C 32 -1 N VAL C 24 O LEU C 45 SHEET 4 AA3 5 ASP C 100 GLU C 109 -1 O VAL C 101 N ALA C 23 SHEET 5 AA3 5 VAL C 114 LEU C 122 -1 O ALA C 117 N GLU C 106 CRYST1 75.776 90.043 131.848 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013197 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007584 0.00000