HEADER OXIDOREDUCTASE 22-FEB-24 8S53 TITLE X-RAY CRYSTAL STRUCTURE OF CYP142 FROM MYCOBACTERIUM TUBERCULOSIS IN TITLE 2 COMPLEX WITH A FRAGMENT BOUND IN TWO POSES COMPND MOL_ID: 1; COMPND 2 MOLECULE: STEROID C26-MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CHOLEST-4-EN-3-ONE C26-MONOOXYGENASE,CHOLEST-4-EN-3-ONE C26- COMPND 5 MONOOXYGENASE [(25R)-3-OXOCHOLEST-4-EN-26-OATE FORMING],CHOLESTEROL COMPND 6 C26-MONOOXYGENASE,CHOLESTEROL C26-MONOOXYGENASE [(25R)-3BETA- COMPND 7 HYDROXYCHOLEST-5-EN-26-OATE FORMING],CYTOCHROME P450 142,STEROID C27- COMPND 8 MONOOXYGENASE; COMPND 9 EC: 1.14.15.28; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS H37RV; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 ATCC: 25618; SOURCE 5 GENE: CYP142, CYP142A1, RV3518C, MTV023.25C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: C41 KEYWDS CYP142, P450, CHOLESTEROL, CYTOCHROME, TUBERCULOSIS, FRAGMENT, HEME, KEYWDS 2 CYP, IRON, DRUG, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SNEE,M.KAVANAGH,C.LEVY,D.LEYS REVDAT 1 29-JAN-25 8S53 0 JRNL AUTH M.E.KAVANAGH,K.J.MCLEAN,S.H.GILBERT,C.AMADI,M.SNEE, JRNL AUTH 2 R.B.TUNNICLIFFE,K.ARORA,H.I.BOSHOFF,A.FANOURAKIS, JRNL AUTH 3 M.J.REBELLO-LOPEZ,F.ORTEGA-MURO,C.W.LEVY,A.W.MUNRO,D.LEYS, JRNL AUTH 4 C.ABELL,A.G.COYNE JRNL TITL FRAGMENT-BASED DEVELOPMENT OF SMALL MOLECULE INHIBITORS JRNL TITL 2 TARGETING MYCOBACTERIUM TUBERCULOSIS CHOLESTEROL METABOLISM. JRNL REF BIORXIV 2024 JRNL REFN ISSN 2692-8205 JRNL PMID 39803573 JRNL DOI 10.1101/2024.10.28.620643 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.LIEBSCHNER,P.AFONINE,M.BAKER REMARK 1 TITL MACROMOLECULAR STRUCTURE DETERMINATION USING X-RAYS, REMARK 1 TITL 2 NEUTRONS AND ELECTRONS: RECENT DEVELOPMENTS IN PHENIX REMARK 1 REF ACTA CRYSTALLOGR., SECT. D: V. 75 861 2019 REMARK 1 REF 2 BIOL. CRYSTALLOGR. REMARK 1 REFN ISSN 0907-4449 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 65.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 62483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 3120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 65.3300 - 4.4800 1.00 2978 152 0.1629 0.1683 REMARK 3 2 4.4800 - 3.5600 1.00 2834 156 0.1330 0.1408 REMARK 3 3 3.5600 - 3.1100 1.00 2784 166 0.1556 0.1907 REMARK 3 4 3.1100 - 2.8200 1.00 2790 156 0.1557 0.1577 REMARK 3 5 2.8200 - 2.6200 1.00 2765 138 0.1493 0.1993 REMARK 3 6 2.6200 - 2.4700 1.00 2801 133 0.1392 0.1691 REMARK 3 7 2.4700 - 2.3400 1.00 2742 143 0.1362 0.1391 REMARK 3 8 2.3400 - 2.2400 1.00 2772 132 0.1284 0.1453 REMARK 3 9 2.2400 - 2.1600 1.00 2726 162 0.1345 0.1728 REMARK 3 10 2.1600 - 2.0800 1.00 2757 139 0.1763 0.2018 REMARK 3 11 2.0800 - 2.0200 1.00 2739 153 0.1655 0.1881 REMARK 3 12 2.0200 - 1.9600 1.00 2731 143 0.1540 0.1799 REMARK 3 13 1.9600 - 1.9100 1.00 2728 133 0.1443 0.1694 REMARK 3 14 1.9100 - 1.8600 1.00 2761 129 0.1492 0.1609 REMARK 3 15 1.8600 - 1.8200 1.00 2717 143 0.1753 0.2097 REMARK 3 16 1.8200 - 1.7800 1.00 2743 129 0.2013 0.2480 REMARK 3 17 1.7800 - 1.7400 1.00 2715 156 0.2401 0.2268 REMARK 3 18 1.7400 - 1.7100 1.00 2752 130 0.2820 0.3094 REMARK 3 19 1.7100 - 1.6800 0.97 2595 140 0.2417 0.2639 REMARK 3 20 1.6800 - 1.6500 0.91 2478 130 0.2309 0.2436 REMARK 3 21 1.6500 - 1.6300 0.86 2304 144 0.2193 0.2565 REMARK 3 22 1.6300 - 1.6000 0.79 2151 113 0.2302 0.2203 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.176 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.362 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.61 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 3234 REMARK 3 ANGLE : 1.154 4407 REMARK 3 CHIRALITY : 0.064 485 REMARK 3 PLANARITY : 0.014 584 REMARK 3 DIHEDRAL : 7.762 471 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 15.2656 -11.4137 -17.5817 REMARK 3 T TENSOR REMARK 3 T11: 0.1499 T22: 0.1583 REMARK 3 T33: 0.1119 T12: -0.0005 REMARK 3 T13: 0.0121 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.0933 L22: 1.4629 REMARK 3 L33: 1.1723 L12: -0.2968 REMARK 3 L13: 0.3882 L23: -0.1920 REMARK 3 S TENSOR REMARK 3 S11: -0.0561 S12: 0.0352 S13: 0.0252 REMARK 3 S21: 0.0426 S22: 0.0130 S23: -0.0682 REMARK 3 S31: 0.0028 S32: 0.1447 S33: 0.0372 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8S53 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136788. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 99 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62563 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 65.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.83100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 550MME WITH 100 MM POTASSIUM REMARK 280 THIOCYANATE AND 0.1 M SODIUM ACETATE AT A PH RANGE OF 5.0-6.0., REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.72900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.32750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.88600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.32750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.72900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.88600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 GLY A 398 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 96 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 GLU A 170 CG CD OE1 OE2 REMARK 470 ASP A 196 CG OD1 OD2 REMARK 470 ASP A 369 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH22 ARG A 258 O HOH A 509 1.58 REMARK 500 HE ARG A 359 O HOH A 505 1.60 REMARK 500 OE2 GLU A 312 O HOH A 501 1.85 REMARK 500 O HOH A 774 O HOH A 891 1.93 REMARK 500 O HOH A 827 O HOH A 913 2.01 REMARK 500 O HOH A 501 O HOH A 628 2.08 REMARK 500 NH1 ARG A 376 O HOH A 502 2.08 REMARK 500 O HOH A 587 O HOH A 736 2.10 REMARK 500 O HOH A 797 O HOH A 806 2.11 REMARK 500 O HOH A 630 O HOH A 683 2.12 REMARK 500 O HOH A 874 O HOH A 882 2.15 REMARK 500 O HOH A 802 O HOH A 841 2.18 REMARK 500 O HOH A 924 O HOH A 925 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 512 O HOH A 868 3544 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 157 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 31 78.63 -156.68 REMARK 500 LEU A 129 -51.32 -130.54 REMARK 500 SER A 168 -178.58 -68.47 REMARK 500 THR A 198 -155.15 -122.38 REMARK 500 ALA A 275 69.92 28.07 REMARK 500 LEU A 361 57.47 -119.83 REMARK 500 PHE A 380 -67.04 -127.21 REMARK 500 MET A 387 80.63 -154.32 REMARK 500 MET A 387 81.66 -154.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 921 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 922 DISTANCE = 6.29 ANGSTROMS REMARK 525 HOH A 923 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 924 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH A 925 DISTANCE = 6.73 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 3QO A 402 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 403 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 340 SG REMARK 620 2 HEM A 403 NA 95.7 REMARK 620 3 HEM A 403 NB 85.5 90.1 REMARK 620 4 HEM A 403 NC 83.7 178.8 90.8 REMARK 620 5 HEM A 403 ND 94.1 90.7 179.1 88.3 REMARK 620 6 3QO A 401 NAK 176.2 88.0 93.5 92.7 86.9 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2XKR RELATED DB: PDB REMARK 900 APO STRUCTURE OF CYP142 REMARK 900 RELATED ID: 7P5T RELATED DB: PDB REMARK 900 7P5T CONTAINS CYP142 IN COMPLEX WITH A DIFFERENT INHIBITOR REMARK 900 RELATED ID: 7QQ7 RELATED DB: PDB REMARK 900 7QQ7CONTAINS CYP142 IN COMPLEX WITH A DIFFERENT INHIBITOR DBREF 8S53 A 1 398 UNP P9WPL5 CP142_MYCTU 1 398 SEQADV 8S53 MET A -19 UNP P9WPL5 INITIATING METHIONINE SEQADV 8S53 GLY A -18 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 SER A -17 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 SER A -16 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 HIS A -15 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 HIS A -14 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 HIS A -13 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 HIS A -12 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 HIS A -11 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 HIS A -10 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 SER A -9 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 SER A -8 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 GLY A -7 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 LEU A -6 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 VAL A -5 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 PRO A -4 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 ARG A -3 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 GLY A -2 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 SER A -1 UNP P9WPL5 EXPRESSION TAG SEQADV 8S53 HIS A 0 UNP P9WPL5 EXPRESSION TAG SEQRES 1 A 418 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 418 LEU VAL PRO ARG GLY SER HIS MET THR GLU ALA PRO ASP SEQRES 3 A 418 VAL ASP LEU ALA ASP GLY ASN PHE TYR ALA SER ARG GLU SEQRES 4 A 418 ALA ARG ALA ALA TYR ARG TRP MET ARG ALA ASN GLN PRO SEQRES 5 A 418 VAL PHE ARG ASP ARG ASN GLY LEU ALA ALA ALA SER THR SEQRES 6 A 418 TYR GLN ALA VAL ILE ASP ALA GLU ARG GLN PRO GLU LEU SEQRES 7 A 418 PHE SER ASN ALA GLY GLY ILE ARG PRO ASP GLN PRO ALA SEQRES 8 A 418 LEU PRO MET MET ILE ASP MET ASP ASP PRO ALA HIS LEU SEQRES 9 A 418 LEU ARG ARG LYS LEU VAL ASN ALA GLY PHE THR ARG LYS SEQRES 10 A 418 ARG VAL LYS ASP LYS GLU ALA SER ILE ALA ALA LEU CYS SEQRES 11 A 418 ASP THR LEU ILE ASP ALA VAL CYS GLU ARG GLY GLU CYS SEQRES 12 A 418 ASP PHE VAL ARG ASP LEU ALA ALA PRO LEU PRO MET ALA SEQRES 13 A 418 VAL ILE GLY ASP MET LEU GLY VAL ARG PRO GLU GLN ARG SEQRES 14 A 418 ASP MET PHE LEU ARG TRP SER ASP ASP LEU VAL THR PHE SEQRES 15 A 418 LEU SER SER HIS VAL SER GLN GLU ASP PHE GLN ILE THR SEQRES 16 A 418 MET ASP ALA PHE ALA ALA TYR ASN ASP PHE THR ARG ALA SEQRES 17 A 418 THR ILE ALA ALA ARG ARG ALA ASP PRO THR ASP ASP LEU SEQRES 18 A 418 VAL SER VAL LEU VAL SER SER GLU VAL ASP GLY GLU ARG SEQRES 19 A 418 LEU SER ASP ASP GLU LEU VAL MET GLU THR LEU LEU ILE SEQRES 20 A 418 LEU ILE GLY GLY ASP GLU THR THR ARG HIS THR LEU SER SEQRES 21 A 418 GLY GLY THR GLU GLN LEU LEU ARG ASN ARG ASP GLN TRP SEQRES 22 A 418 ASP LEU LEU GLN ARG ASP PRO SER LEU LEU PRO GLY ALA SEQRES 23 A 418 ILE GLU GLU MET LEU ARG TRP THR ALA PRO VAL LYS ASN SEQRES 24 A 418 MET CYS ARG VAL LEU THR ALA ASP THR GLU PHE HIS GLY SEQRES 25 A 418 THR ALA LEU CYS ALA GLY GLU LYS MET MET LEU LEU PHE SEQRES 26 A 418 GLU SER ALA ASN PHE ASP GLU ALA VAL PHE CYS GLU PRO SEQRES 27 A 418 GLU LYS PHE ASP VAL GLN ARG ASN PRO ASN SER HIS LEU SEQRES 28 A 418 ALA PHE GLY PHE GLY THR HIS PHE CYS LEU GLY ASN GLN SEQRES 29 A 418 LEU ALA ARG LEU GLU LEU SER LEU MET THR GLU ARG VAL SEQRES 30 A 418 LEU ARG ARG LEU PRO ASP LEU ARG LEU VAL ALA ASP ASP SEQRES 31 A 418 SER VAL LEU PRO LEU ARG PRO ALA ASN PHE VAL SER GLY SEQRES 32 A 418 LEU GLU SER MET PRO VAL VAL PHE THR PRO SER PRO PRO SEQRES 33 A 418 LEU GLY HET 3QO A 401 24 HET 3QO A 402 14 HET HEM A 403 73 HETNAM 3QO 4-BENZYLPYRIDINE HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETSYN HEM HEME FORMUL 2 3QO 2(C12 H11 N) FORMUL 4 HEM C34 H32 FE N4 O4 FORMUL 5 HOH *425(H2 O) HELIX 1 AA1 ASP A 11 SER A 17 1 7 HELIX 2 AA2 GLU A 19 GLN A 31 1 13 HELIX 3 AA3 THR A 45 ARG A 54 1 10 HELIX 4 AA4 MET A 74 MET A 78 5 5 HELIX 5 AA5 PRO A 81 ASN A 91 1 11 HELIX 6 AA6 ALA A 92 PHE A 94 5 3 HELIX 7 AA7 THR A 95 ASP A 101 1 7 HELIX 8 AA8 LYS A 102 ALA A 116 1 15 HELIX 9 AA9 PHE A 125 LEU A 129 1 5 HELIX 10 AB1 ALA A 131 GLY A 143 1 13 HELIX 11 AB2 ARG A 145 GLU A 147 5 3 HELIX 12 AB3 GLN A 148 SER A 164 1 17 HELIX 13 AB4 SER A 168 ASP A 196 1 29 HELIX 14 AB5 ASP A 200 SER A 208 1 9 HELIX 15 AB6 SER A 216 THR A 234 1 19 HELIX 16 AB7 THR A 234 ASN A 249 1 16 HELIX 17 AB8 ASN A 249 ASP A 259 1 11 HELIX 18 AB9 LEU A 262 ALA A 275 1 14 HELIX 19 AC1 PHE A 305 PHE A 310 1 6 HELIX 20 AC2 GLY A 342 LEU A 361 1 20 SHEET 1 AA1 5 VAL A 33 ARG A 35 0 SHEET 2 AA1 5 ALA A 41 ALA A 43 -1 O ALA A 42 N PHE A 34 SHEET 3 AA1 5 LYS A 300 LEU A 304 1 O MET A 302 N ALA A 43 SHEET 4 AA1 5 ASN A 279 LEU A 284 -1 N ARG A 282 O MET A 301 SHEET 5 AA1 5 PHE A 59 SER A 60 -1 N SER A 60 O VAL A 283 SHEET 1 AA2 3 GLU A 122 ASP A 124 0 SHEET 2 AA2 3 PRO A 388 VAL A 390 -1 O VAL A 389 N CYS A 123 SHEET 3 AA2 3 ARG A 365 LEU A 366 -1 N ARG A 365 O VAL A 390 SHEET 1 AA3 2 THR A 288 PHE A 290 0 SHEET 2 AA3 2 THR A 293 LEU A 295 -1 O LEU A 295 N THR A 288 LINK SG CYS A 340 FE HEM A 403 1555 1555 2.35 LINK NAK 3QO A 401 FE HEM A 403 1555 1555 2.07 CISPEP 1 ASP A 80 PRO A 81 0 5.72 CISPEP 2 ASN A 326 PRO A 327 0 -1.75 CRYST1 55.458 65.772 130.655 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018032 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015204 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007654 0.00000