HEADER DNA 23-FEB-24 8S5A TITLE THE CRYSTAL STRUCTURE OF FAN1 NUCLEASE BOUND TO 5' PHOSPHORYLATED TITLE 2 P(DG)/3'(DT-DT-DT-DT) DOUBLE FLAP DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FANCONI-ASSOCIATED NUCLEASE 1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FANCD2/FANCI-ASSOCIATED NUCLEASE 1,HFAN1,MYOTUBULARIN- COMPND 5 RELATED PROTEIN 15; COMPND 6 EC: 3.1.21.-,3.1.4.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'- COMPND 10 D(*AP*AP*CP*AP*CP*GP*CP*CP*TP*AP*GP*AP*CP*TP*CP*CP*TP*CP*A)-3'); COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: DNA (5'-D(P*GP*AP*GP*GP*CP*GP*TP*G)-3'); COMPND 15 CHAIN: C; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: DNA (5'-D(*TP*TP*TP*GP*AP*GP*GP*AP*GP*TP*CP*TP*T)-3'); COMPND 19 CHAIN: D; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FAN1, KIAA1018, MTMR15; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630; SOURCE 16 MOL_ID: 4; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 19 ORGANISM_TAXID: 32630 KEYWDS NUCLEASE FAN1, DNA EXPDTA X-RAY DIFFRACTION AUTHOR J.ARETZ,G.JEYASANKAR,A.SALERNO-KOCHAN,M.THOMSEN,G.THIEULIN-PARDO, AUTHOR 2 T.HAQUE,E.MONTEAGUDO,D.FELSENFELD,M.FINLEY,T.F.VOGT,J.BOUDET, AUTHOR 3 B.C.PRASAD REVDAT 3 09-JUL-25 8S5A 1 AUTHOR REVDAT 2 04-JUN-25 8S5A 1 JRNL REVDAT 1 05-MAR-25 8S5A 0 JRNL AUTH J.ARETZ,G.JEYASANKAR,A.SALERNO-KOCHAN,M.THOMSEN, JRNL AUTH 2 G.THIEULIN-PARDO,T.HAQUE,E.MONTEAGUDO,D.FELSENFELD,M.FINLEY, JRNL AUTH 3 T.F.VOGT,J.BOUDET,B.C.PRASAD JRNL TITL A FAN1 POINT MUTATION ASSOCIATED WITH ACCELERATED JRNL TITL 2 HUNTINGTON'S DISEASE PROGRESSION ALTERS ITS PCNA-MEDIATED JRNL TITL 3 ASSEMBLY ON DNA. JRNL REF NAT COMMUN V. 16 4412 2025 JRNL REFN ESSN 2041-1723 JRNL PMID 40368883 JRNL DOI 10.1038/S41467-025-59324-X REMARK 2 REMARK 2 RESOLUTION. 2.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31090 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.647 REMARK 3 FREE R VALUE TEST SET COUNT : 823 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2219 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.3810 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.3600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4785 REMARK 3 NUCLEIC ACID ATOMS : 816 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 84.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.12000 REMARK 3 B22 (A**2) : 8.21800 REMARK 3 B33 (A**2) : -2.09900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.502 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.309 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.314 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.890 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5630 ; 0.003 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4918 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7803 ; 1.249 ; 1.546 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11259 ; 1.179 ; 1.704 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 587 ; 6.179 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 242 ;31.263 ;21.240 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 769 ;13.919 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;16.367 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 735 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5794 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1317 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1041 ; 0.159 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 19 ; 0.161 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2524 ; 0.159 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 106 ; 0.107 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.020 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2364 ; 3.767 ; 9.316 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2363 ; 3.757 ; 9.314 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2945 ; 5.821 ;13.963 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2946 ; 5.820 ;13.965 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3266 ; 3.447 ; 9.504 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3265 ; 3.447 ; 9.501 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4858 ; 5.435 ;14.225 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4859 ; 5.435 ;14.227 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8S5A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-FEB-24. REMARK 100 THE DEPOSITION ID IS D_1292136830. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31091 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.645 REMARK 200 RESOLUTION RANGE LOW (A) : 43.395 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 11.20 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES/MOPS PH: 7.25, 0.1M SODIUM REMARK 280 FORMATE 0.1M AMMONIUM ACETATE 0.1M SODIUM CITRATE TRIBASIC REMARK 280 DIHYDRATE 0.1M POTASSIUM SODIUM TARTRATE TETRAHYDRATE 0.1M REMARK 280 SODIUM OXAMATE 21% V/V ETHYLENE GLYCOL 21 % W/V PEG 8000, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.81300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.43950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.27350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.43950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.81300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.27350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 355 REMARK 465 PRO A 356 REMARK 465 MET A 357 REMARK 465 GLY A 358 REMARK 465 ALA A 359 REMARK 465 HIS A 360 REMARK 465 MET A 361 REMARK 465 THR A 362 REMARK 465 ARG A 363 REMARK 465 ASN A 364 REMARK 465 GLY A 365 REMARK 465 PRO A 366 REMARK 465 GLY A 367 REMARK 465 GLN A 368 REMARK 465 THR A 369 REMARK 465 THR A 370 REMARK 465 GLY A 371 REMARK 465 ASP A 562 REMARK 465 ALA A 563 REMARK 465 ALA A 564 REMARK 465 CYS A 565 REMARK 465 GLY A 566 REMARK 465 GLY A 567 REMARK 465 GLN A 568 REMARK 465 GLY A 569 REMARK 465 GLN A 570 REMARK 465 GLN A 767 REMARK 465 GLN A 768 REMARK 465 LEU A 769 REMARK 465 PRO A 770 REMARK 465 GLU A 771 REMARK 465 MET A 772 REMARK 465 LEU A 786 REMARK 465 CYS A 787 REMARK 465 PRO A 788 REMARK 465 GLN A 789 REMARK 465 ARG A 790 REMARK 465 GLY A 791 REMARK 465 MET A 792 REMARK 465 CYS A 793 REMARK 465 ALA A 794 REMARK 465 SER A 795 REMARK 465 VAL A 796 REMARK 465 GLU A 800 REMARK 465 ALA A 801 REMARK 465 GLY A 802 REMARK 465 GLU A 803 REMARK 465 ALA A 804 REMARK 465 ALA A 805 REMARK 465 ASP A 806 REMARK 465 PRO A 807 REMARK 465 THR A 808 REMARK 465 THR A 809 REMARK 465 VAL A 1009 REMARK 465 GLY A 1010 REMARK 465 ALA A 1011 REMARK 465 LYS A 1012 REMARK 465 SER A 1013 REMARK 465 GLN A 1014 REMARK 465 SER A 1015 REMARK 465 LEU A 1016 REMARK 465 SER A 1017 REMARK 465 DT D 14 REMARK 465 DT D 15 REMARK 465 DT D 16 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 390 CD OE1 OE2 REMARK 480 LYS A 401 CE NZ REMARK 480 LYS A 406 NZ REMARK 480 LYS A 416 NZ REMARK 480 LYS A 425 CD CE NZ REMARK 480 LYS A 433 CD CE NZ REMARK 480 GLU A 435 CD OE1 OE2 REMARK 480 GLU A 437 CD OE1 OE2 REMARK 480 LEU A 441 CD1 CD2 REMARK 480 GLU A 448 CD OE1 OE2 REMARK 480 GLU A 470 CD OE1 OE2 REMARK 480 LYS A 478 CD CE NZ REMARK 480 LYS A 482 CD CE NZ REMARK 480 LEU A 486 CD1 CD2 REMARK 480 LYS A 502 CD CE NZ REMARK 480 GLN A 506 CD OE1 NE2 REMARK 480 LYS A 525 CD CE NZ REMARK 480 LYS A 539 CE NZ REMARK 480 GLU A 561 CD OE1 OE2 REMARK 480 LEU A 571 CG CD1 CD2 REMARK 480 ARG A 581 CD NE CZ NH1 NH2 REMARK 480 GLU A 583 CD OE1 OE2 REMARK 480 LYS A 592 CD CE NZ REMARK 480 LYS A 628 CE NZ REMARK 480 GLU A 629 CD OE1 OE2 REMARK 480 LYS A 635 CD CE NZ REMARK 480 ARG A 636 CD NE CZ NH1 NH2 REMARK 480 LYS A 642 CE NZ REMARK 480 ARG A 648 CD NE CZ NH1 NH2 REMARK 480 ARG A 688 CD NE CZ NH1 NH2 REMARK 480 ARG A 697 NE CZ NH1 NH2 REMARK 480 ILE A 698 CD1 REMARK 480 LYS A 720 CD CE NZ REMARK 480 GLU A 723 CD OE1 OE2 REMARK 480 ILE A 726 CD1 REMARK 480 LYS A 727 CD CE NZ REMARK 480 ARG A 754 CD NE CZ NH1 NH2 REMARK 480 LYS A 760 CE NZ REMARK 480 LYS A 761 CD CE NZ REMARK 480 LYS A 763 CG CD CE NZ REMARK 480 HIS A 764 CG ND1 CD2 CE1 NE2 REMARK 480 PHE A 766 CG CD1 CD2 CE1 CE2 CZ REMARK 480 VAL A 774 CG1 CG2 REMARK 480 GLN A 775 CD OE1 NE2 REMARK 480 ASP A 776 CG OD1 OD2 REMARK 480 LYS A 778 CD CE NZ REMARK 480 ILE A 782 CD1 REMARK 480 ARG A 785 CD NE CZ NH1 NH2 REMARK 480 VAL A 810 CG1 CG2 REMARK 480 LEU A 811 CG CD1 CD2 REMARK 480 ARG A 823 NE CZ NH1 NH2 REMARK 480 GLU A 896 CD OE1 OE2 REMARK 480 GLN A 926 CD OE1 NE2 REMARK 480 LYS A 972 CD CE NZ REMARK 480 ARG A 982 NE CZ NH1 NH2 REMARK 480 LYS A 996 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 1 P DG C 1 OP3 -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 459 -55.92 -29.26 REMARK 500 PHE A 660 45.33 -91.09 REMARK 500 MET A 682 66.58 -103.93 REMARK 500 THR A 740 -111.24 34.88 REMARK 500 GLU A 834 -129.47 50.78 REMARK 500 ASP A 857 -0.69 82.80 REMARK 500 CYS A 863 55.87 -118.88 REMARK 500 CYS A 871 36.22 -93.65 REMARK 500 ASP A 950 69.73 -158.59 REMARK 500 GLN A 967 -61.24 -97.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1101 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 960 OD2 REMARK 620 2 GLU A 975 OE2 69.1 REMARK 620 3 VAL A 976 O 76.7 88.1 REMARK 620 N 1 2 DBREF 8S5A A 364 1017 UNP Q9Y2M0 FAN1_HUMAN 364 1017 DBREF 8S5A B 1 19 PDB 8S5A 8S5A 1 19 DBREF 8S5A C 1 8 PDB 8S5A 8S5A 1 8 DBREF 8S5A D 1 16 PDB 8S5A 8S5A 1 16 SEQADV 8S5A GLY A 355 UNP Q9Y2M0 EXPRESSION TAG SEQADV 8S5A PRO A 356 UNP Q9Y2M0 EXPRESSION TAG SEQADV 8S5A MET A 357 UNP Q9Y2M0 EXPRESSION TAG SEQADV 8S5A GLY A 358 UNP Q9Y2M0 EXPRESSION TAG SEQADV 8S5A ALA A 359 UNP Q9Y2M0 EXPRESSION TAG SEQADV 8S5A HIS A 360 UNP Q9Y2M0 EXPRESSION TAG SEQADV 8S5A MET A 361 UNP Q9Y2M0 EXPRESSION TAG SEQADV 8S5A THR A 362 UNP Q9Y2M0 EXPRESSION TAG SEQADV 8S5A ARG A 363 UNP Q9Y2M0 EXPRESSION TAG SEQADV 8S5A HIS A 507 UNP Q9Y2M0 ARG 507 CONFLICT SEQADV 8S5A A UNP Q9Y2M0 CYS 510 DELETION SEQADV 8S5A A UNP Q9Y2M0 THR 511 DELETION SEQADV 8S5A A UNP Q9Y2M0 TRP 512 DELETION SEQADV 8S5A A UNP Q9Y2M0 GLY 513 DELETION SEQADV 8S5A A UNP Q9Y2M0 LYS 514 DELETION SEQADV 8S5A A UNP Q9Y2M0 ASN 515 DELETION SEQADV 8S5A A UNP Q9Y2M0 LYS 516 DELETION SEQADV 8S5A A UNP Q9Y2M0 PRO 517 DELETION SEQADV 8S5A A UNP Q9Y2M0 GLY 518 DELETION SEQADV 8S5A ALA A 794 UNP Q9Y2M0 LYS 794 CONFLICT SEQRES 1 A 654 GLY PRO MET GLY ALA HIS MET THR ARG ASN GLY PRO GLY SEQRES 2 A 654 GLN THR THR GLY HIS PRO TYR TYR LEU ARG SER PHE LEU SEQRES 3 A 654 VAL VAL LEU LYS THR VAL LEU GLU ASN GLU ASP ASP MET SEQRES 4 A 654 LEU LEU PHE ASP GLU GLN GLU LYS GLY ILE VAL THR LYS SEQRES 5 A 654 PHE TYR GLN LEU SER ALA THR GLY GLN LYS LEU TYR VAL SEQRES 6 A 654 ARG LEU PHE GLN ARG LYS LEU SER TRP ILE LYS MET THR SEQRES 7 A 654 LYS LEU GLU TYR GLU GLU ILE ALA LEU ASP LEU THR PRO SEQRES 8 A 654 VAL ILE GLU GLU LEU THR ASN ALA GLY PHE LEU GLN THR SEQRES 9 A 654 GLU SER GLU LEU GLN GLU LEU SER GLU VAL LEU GLU LEU SEQRES 10 A 654 LEU SER ALA PRO GLU LEU LYS SER LEU ALA LYS THR PHE SEQRES 11 A 654 HIS LEU VAL ASN PRO ASN GLY GLN LYS GLN GLN LEU VAL SEQRES 12 A 654 ASP ALA PHE LEU LYS LEU ALA LYS GLN HIS SER VAL ILE SEQRES 13 A 654 GLY ALA VAL ILE LEU LYS ARG ALA LYS ALA LEU ALA GLY SEQRES 14 A 654 GLN SER VAL ARG ILE CYS LYS GLY PRO ARG ALA VAL PHE SEQRES 15 A 654 SER ARG ILE LEU LEU LEU PHE SER LEU THR ASP SER MET SEQRES 16 A 654 GLU ASP GLU ASP ALA ALA CYS GLY GLY GLN GLY GLN LEU SEQRES 17 A 654 SER THR VAL LEU LEU VAL ASN LEU GLY ARG MET GLU PHE SEQRES 18 A 654 PRO SER TYR THR ILE ASN ARG LYS THR HIS ILE PHE GLN SEQRES 19 A 654 ASP ARG ASP ASP LEU ILE ARG TYR ALA ALA ALA THR HIS SEQRES 20 A 654 MET LEU SER ASP ILE SER SER ALA MET ALA ASN GLY ASN SEQRES 21 A 654 TRP GLU GLU ALA LYS GLU LEU ALA GLN CYS ALA LYS ARG SEQRES 22 A 654 ASP TRP ASN ARG LEU LYS ASN HIS PRO SER LEU ARG CYS SEQRES 23 A 654 HIS GLU ASP LEU PRO LEU PHE LEU ARG CYS PHE THR VAL SEQRES 24 A 654 GLY TRP ILE TYR THR ARG ILE LEU SER ARG PHE VAL GLU SEQRES 25 A 654 ILE LEU GLN ARG LEU HIS MET TYR GLU GLU ALA VAL ARG SEQRES 26 A 654 GLU LEU GLU SER LEU LEU SER GLN ARG ILE TYR CYS PRO SEQRES 27 A 654 ASP SER ARG GLY ARG TRP TRP ASP ARG LEU ALA LEU ASN SEQRES 28 A 654 LEU HIS GLN HIS LEU LYS ARG LEU GLU PRO THR ILE LYS SEQRES 29 A 654 CYS ILE THR GLU GLY LEU ALA ASP PRO GLU VAL ARG THR SEQRES 30 A 654 GLY HIS ARG LEU SER LEU TYR GLN ARG ALA VAL ARG LEU SEQRES 31 A 654 ARG GLU SER PRO SER CYS LYS LYS PHE LYS HIS LEU PHE SEQRES 32 A 654 GLN GLN LEU PRO GLU MET ALA VAL GLN ASP VAL LYS HIS SEQRES 33 A 654 VAL THR ILE THR GLY ARG LEU CYS PRO GLN ARG GLY MET SEQRES 34 A 654 CYS ALA SER VAL PHE VAL MET GLU ALA GLY GLU ALA ALA SEQRES 35 A 654 ASP PRO THR THR VAL LEU CYS SER VAL GLU GLU LEU ALA SEQRES 36 A 654 LEU ALA HIS TYR ARG ARG SER GLY PHE ASP GLN GLY ILE SEQRES 37 A 654 HIS GLY GLU GLY SER THR PHE SER THR LEU TYR GLY LEU SEQRES 38 A 654 LEU LEU TRP ASP ILE ILE PHE MET ASP GLY ILE PRO ASP SEQRES 39 A 654 VAL PHE ARG ASN ALA CYS GLN ALA PHE PRO LEU ASP LEU SEQRES 40 A 654 CYS THR ASP SER PHE PHE THR SER ARG ARG PRO ALA LEU SEQRES 41 A 654 GLU ALA ARG LEU GLN LEU ILE HIS ASP ALA PRO GLU GLU SEQRES 42 A 654 SER LEU ARG ALA TRP VAL ALA ALA THR TRP HIS GLU GLN SEQRES 43 A 654 GLU GLY ARG VAL ALA SER LEU VAL SER TRP ASP ARG PHE SEQRES 44 A 654 THR SER LEU GLN GLN ALA GLN ASP LEU VAL SER CYS LEU SEQRES 45 A 654 GLY GLY PRO VAL LEU SER GLY VAL CYS ARG HIS LEU ALA SEQRES 46 A 654 ALA ASP PHE ARG HIS CYS ARG GLY GLY LEU PRO ASP LEU SEQRES 47 A 654 VAL VAL TRP ASN SER GLN SER ARG HIS PHE LYS LEU VAL SEQRES 48 A 654 GLU VAL LYS GLY PRO ASN ASP ARG LEU SER HIS LYS GLN SEQRES 49 A 654 MET ILE TRP LEU ALA GLU LEU GLN LYS LEU GLY ALA GLU SEQRES 50 A 654 VAL GLU VAL CYS HIS VAL VAL ALA VAL GLY ALA LYS SER SEQRES 51 A 654 GLN SER LEU SER SEQRES 1 B 19 DA DA DC DA DC DG DC DC DT DA DG DA DC SEQRES 2 B 19 DT DC DC DT DC DA SEQRES 1 C 8 DG DA DG DG DC DG DT DG SEQRES 1 D 16 DT DT DT DG DA DG DG DA DG DT DC DT DT SEQRES 2 D 16 DT DT DT HET CA A1101 1 HET CA A1102 1 HET CL C 101 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 5 CA 2(CA 2+) FORMUL 7 CL CL 1- FORMUL 8 HOH *16(H2 O) HELIX 1 AA1 PRO A 373 GLU A 388 1 16 HELIX 2 AA2 ASN A 389 LEU A 394 1 6 HELIX 3 AA3 ASP A 397 GLN A 409 1 13 HELIX 4 AA4 SER A 411 GLN A 423 1 13 HELIX 5 AA5 LEU A 443 ALA A 453 1 11 HELIX 6 AA6 SER A 460 LEU A 462 5 3 HELIX 7 AA7 GLU A 464 LEU A 472 1 9 HELIX 8 AA8 SER A 473 PHE A 484 1 12 HELIX 9 AA9 GLN A 492 HIS A 507 1 16 HELIX 10 AB1 HIS A 507 GLY A 532 1 17 HELIX 11 AB2 CYS A 538 SER A 557 1 20 HELIX 12 AB3 SER A 572 LEU A 579 1 8 HELIX 13 AB4 ASP A 598 ASN A 621 1 24 HELIX 14 AB5 ASN A 623 LYS A 642 1 20 HELIX 15 AB6 PRO A 645 ASP A 652 1 8 HELIX 16 AB7 PRO A 654 CYS A 659 1 6 HELIX 17 AB8 THR A 661 LEU A 680 1 20 HELIX 18 AB9 MET A 682 SER A 695 1 14 HELIX 19 AC1 CYS A 700 ASP A 702 5 3 HELIX 20 AC2 SER A 703 HIS A 718 1 16 HELIX 21 AC3 ARG A 721 ASP A 735 1 15 HELIX 22 AC4 ARG A 739 GLU A 755 1 17 HELIX 23 AC5 SER A 756 LYS A 760 5 5 HELIX 24 AC6 SER A 813 SER A 825 1 13 HELIX 25 AC7 GLY A 835 LEU A 846 1 12 HELIX 26 AC8 LEU A 846 PHE A 851 1 6 HELIX 27 AC9 ASP A 873 ARG A 879 1 7 HELIX 28 AD1 ARG A 879 ASP A 892 1 14 HELIX 29 AD2 PRO A 894 GLU A 910 1 17 HELIX 30 AD3 SER A 924 GLY A 936 1 13 HELIX 31 AD4 GLY A 936 ARG A 955 1 20 HELIX 32 AD5 SER A 984 LEU A 997 1 14 SHEET 1 AA1 3 ILE A 429 LYS A 430 0 SHEET 2 AA1 3 SER A 534 ILE A 537 -1 O VAL A 535 N ILE A 429 SHEET 3 AA1 3 LEU A 456 THR A 458 -1 N GLN A 457 O ARG A 536 SHEET 1 AA2 5 LYS A 778 THR A 783 0 SHEET 2 AA2 5 GLU A1000 VAL A1007 1 O HIS A1005 N VAL A 780 SHEET 3 AA2 5 PHE A 971 VAL A 974 1 N LEU A 973 O GLU A1000 SHEET 4 AA2 5 LEU A 961 TRP A 964 -1 N LEU A 961 O VAL A 974 SHEET 5 AA2 5 GLN A 829 HIS A 832 -1 N ILE A 831 O VAL A 962 LINK O PRO A 959 CA CA A1102 1555 1555 2.73 LINK OD2 ASP A 960 CA CA A1101 1555 1555 2.31 LINK OE2 GLU A 975 CA CA A1101 1555 1555 2.63 LINK O VAL A 976 CA CA A1101 1555 1555 2.31 CRYST1 91.626 100.547 112.879 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010914 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009946 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008859 0.00000 TER 4786 ALA A1008 TER 5166 DA B 19 TER 5338 DG C 8 TER 5605 DT D 13 HETATM 5606 CA CA A1101 -38.274 24.065 -43.537 1.00100.32 CA2+ HETATM 5607 CA CA A1102 -43.314 24.893 -34.237 1.00109.12 CA2+ HETATM 5608 CL CL C 101 -21.237 21.606 -38.705 1.00116.77 CL1- HETATM 5609 O HOH A1201 -38.498 13.620 -34.066 1.00 64.77 O0 HETATM 5610 O HOH A1202 -19.576 19.000 -2.228 1.00 77.04 O0 HETATM 5611 O HOH A1203 -41.559 42.061 -24.173 1.00 87.35 O0 HETATM 5612 O HOH A1204 -59.629 13.483 -18.767 1.00 81.48 O0 HETATM 5613 O HOH A1205 -28.481 7.240 -9.840 1.00 92.31 O0 HETATM 5614 O HOH A1206 -32.374 5.533 -27.653 1.00 82.68 O0 HETATM 5615 O HOH A1207 -58.412 30.495 -40.881 1.00 72.80 O0 HETATM 5616 O HOH A1208 -40.054 4.197 -31.056 1.00 82.42 O0 HETATM 5617 O HOH A1209 -26.524 9.154 -21.971 1.00 63.89 O0 HETATM 5618 O HOH A1210 -39.564 42.163 -27.407 1.00 79.20 O0 HETATM 5619 O HOH A1211 -5.228 13.075 -45.140 1.00 90.89 O0 HETATM 5620 O HOH A1212 -21.978 6.608 -37.514 1.00 65.28 O0 HETATM 5621 O HOH A1213 -34.966 24.415 -33.505 1.00 77.92 O0 HETATM 5622 O HOH A1214 -22.999 25.637 -18.346 1.00 68.47 O0 HETATM 5623 O HOH A1215 -35.113 30.204 -36.985 1.00 79.92 O0 HETATM 5624 O HOH B 101 3.722 33.882 -44.341 1.00 87.05 O0 CONECT 4386 5607 CONECT 4397 5606 CONECT 4527 5606 CONECT 4531 5606 CONECT 5606 4397 4527 4531 CONECT 5607 4386 MASTER 430 0 3 32 8 0 0 6 5620 4 6 56 END