HEADER OXIDOREDUCTASE 04-MAR-24 8S7N TITLE VANILLYL-ALCOHOL DEHYDROGENASE FROM MARINICAULIS FLAVUS: P151L MUTANT TITLE 2 BOUND TO EUGENOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: OXIDOREDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINICAULIS FLAVUS; SOURCE 3 ORGANISM_TAXID: 2058213; SOURCE 4 GENE: CW354_13745; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: NEB10BETA KEYWDS FAD, FLAVIM OXIDASE, ALCOHOL, ENZYME MECHANISM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.B.GUERRIERE,A.MATTEVI REVDAT 3 05-FEB-25 8S7N 1 JRNL REVDAT 2 22-JAN-25 8S7N 1 JRNL REVDAT 1 15-JAN-25 8S7N 0 JRNL AUTH T.B.GUERRIERE,A.VANCHERI,I.RICOTTI,S.A.SERAPIAN,D.EGGERICHS, JRNL AUTH 2 D.TISCHLER,G.COLOMBO,M.L.MASCOTTI,M.W.FRAAIJE,A.MATTEVI JRNL TITL DEHYDROGENASE VERSUS OXIDASE FUNCTION: THE INTERPLAY BETWEEN JRNL TITL 2 SUBSTRATE BINDING AND FLAVIN MICROENVIRONMENT. JRNL REF ACS CATALYSIS V. 15 1046 2025 JRNL REFN ESSN 2155-5435 JRNL PMID 39781101 JRNL DOI 10.1021/ACSCATAL.4C05944 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.20 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 155094 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 8262 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11336 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3270 REMARK 3 BIN FREE R VALUE SET COUNT : 599 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8174 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 239 REMARK 3 SOLVENT ATOMS : 917 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.067 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.382 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.964 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 8641 ; 0.013 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 7910 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 11735 ; 1.705 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 18228 ; 1.485 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1036 ; 7.111 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 444 ;36.607 ;22.162 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1318 ;13.075 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;19.499 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1062 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 9750 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1990 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4150 ; 2.047 ; 2.420 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 4149 ; 2.047 ; 2.419 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5184 ; 2.657 ; 3.618 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 5185 ; 2.656 ; 3.619 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 4491 ; 3.480 ; 2.805 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 4492 ; 3.479 ; 2.805 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 6552 ; 4.981 ; 4.050 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 10256 ; 6.061 ;29.819 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 10018 ; 5.966 ;29.246 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8S7N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137007. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JAN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.999990 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.9 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 163464 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.19400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 3.73500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CONDITION C4 OF THE MORPHEUS SCREEN REMARK 280 (HAMPTON RESEARCH), PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.52950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 69.50950 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 69.50950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.26475 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 69.50950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 69.50950 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 135.79425 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 69.50950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 69.50950 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.26475 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 69.50950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 69.50950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 135.79425 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 90.52950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 520 REMARK 465 ALA A 521 REMARK 465 LYS B 520 REMARK 465 ALA B 521 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 MET B 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 463 CD GLU B 463 OE2 -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 111 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 363 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 33 -119.95 48.87 REMARK 500 TYR A 43 70.69 -114.78 REMARK 500 LYS A 87 36.02 -99.50 REMARK 500 ASN A 88 46.99 -81.30 REMARK 500 ALA A 90 -5.99 86.02 REMARK 500 ALA A 273 172.73 -59.97 REMARK 500 TYR A 482 54.10 -92.09 REMARK 500 ALA A 507 61.60 39.69 REMARK 500 GLU B 33 -87.33 -132.71 REMARK 500 TYR B 43 73.11 -112.35 REMARK 500 ILE B 45 -52.63 -121.10 REMARK 500 LYS B 87 30.32 -96.92 REMARK 500 ALA B 90 -7.63 84.02 REMARK 500 GLN B 220 51.90 38.25 REMARK 500 TYR B 482 57.60 -93.87 REMARK 500 ALA B 507 59.09 39.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 166 TYR A 167 -145.66 REMARK 500 GLY B 166 TYR B 167 -149.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1165 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B1166 DISTANCE = 6.01 ANGSTROMS DBREF1 8S7N A 1 521 UNP A0A2S7K3M2_9PROT DBREF2 8S7N A A0A2S7K3M2 1 521 DBREF1 8S7N B 1 521 UNP A0A2S7K3M2_9PROT DBREF2 8S7N B A0A2S7K3M2 1 521 SEQADV 8S7N LEU A 151 UNP A0A2S7K3M PRO 151 ENGINEERED MUTATION SEQADV 8S7N LEU B 151 UNP A0A2S7K3M PRO 151 ENGINEERED MUTATION SEQRES 1 A 521 MET ALA ALA PRO LEU PRO GLU GLY VAL SER ALA GLU ALA SEQRES 2 A 521 MET SER SER ALA LEU ASP ARG PHE ALA ARG ILE VAL GLY SEQRES 3 A 521 ALA ASP TRP VAL PHE THR GLU ASP LYS ILE THR PRO TYR SEQRES 4 A 521 GLU ASP PRO TYR THR ILE SER ASN ASP GLU THR GLU HIS SEQRES 5 A 521 ARG PRO TYR ALA ALA VAL ALA PRO ALA SER THR GLU GLU SEQRES 6 A 521 VAL GLN GLU ILE VAL ARG VAL ALA ASN GLU PHE GLY VAL SEQRES 7 A 521 PRO LEU TRP PRO VAL SER ARG GLY LYS ASN PHE ALA TYR SEQRES 8 A 521 GLY GLY ALA ALA PRO VAL MET SER GLY THR VAL VAL LEU SEQRES 9 A 521 ASP MET ASN ARG MET ASN ARG ILE LEU GLU VAL ASN GLU SEQRES 10 A 521 GLU PHE GLY TYR ALA LEU VAL GLU PRO GLY VAL SER TYR SEQRES 11 A 521 PHE GLU LEU TYR ASP TYR ILE GLN GLU LYS GLY LEU LYS SEQRES 12 A 521 LEU TRP ILE ASP VAL PRO ASP LEU GLY TRP GLY SER VAL SEQRES 13 A 521 VAL GLY ASN ALA LEU ASP HIS GLY ILE GLY TYR THR PRO SEQRES 14 A 521 TYR GLY ASP HIS PHE ALA MET GLN CYS GLY MET GLU VAL SEQRES 15 A 521 VAL LEU PRO ASN GLY GLU VAL VAL ARG THR GLY MET GLY SEQRES 16 A 521 ALA MET PRO GLY ASN ASN THR TRP GLN LEU PHE LYS TYR SEQRES 17 A 521 GLY TYR GLY PRO TYR VAL ASP GLY ILE PHE SER GLN SER SEQRES 18 A 521 ASN PHE GLY VAL VAL THR LYS MET GLY ILE TRP LEU MET SEQRES 19 A 521 PRO GLU PRO ALA GLY TYR ARG PRO TYR LEU ILE THR PHE SEQRES 20 A 521 GLU ASN GLU ASP ASP ILE GLU THR VAL THR GLU ARG LEU SEQRES 21 A 521 ARG PRO LEU LYS VAL ALA GLY VAL ILE GLN ASN GLY ALA SEQRES 22 A 521 THR VAL ARG SER LEU VAL LEU ASP ALA ALA ILE THR ARG SEQRES 23 A 521 THR LYS SER GLN TYR TYR ASP GLY ASP GLY PRO ILE PRO SEQRES 24 A 521 PRO SER VAL ALA LYS THR MET MET ALA ASP LEU ASP LEU SEQRES 25 A 521 GLY MET TRP ASN PHE CYS GLY ALA LEU TYR GLY PRO PRO SEQRES 26 A 521 PRO VAL MET ASP THR LEU TRP THR ALA ILE ARG ASP SER SEQRES 27 A 521 PHE ALA ASP ILE PRO GLY VAL LYS PHE TYR PHE PRO GLU SEQRES 28 A 521 ASP ARG ARG HIS LYS VAL ASP LEU LEU LEU HIS ARG ALA SEQRES 29 A 521 GLU THR MET LYS GLY VAL PRO LYS LEU THR GLU PHE ASN SEQRES 30 A 521 PHE LEU ASN TRP ASP GLY GLY GLY GLY HIS VAL GLY PHE SEQRES 31 A 521 SER PRO VAL SER PRO ILE THR GLY LYS ASP ALA ILE LYS SEQRES 32 A 521 GLN TYR ASN MET VAL SER SER ARG VAL ARG GLU TYR GLY SEQRES 33 A 521 PHE ASP TYR MET GLY LEU LEU ALA ILE GLY TRP ARG ASP SEQRES 34 A 521 LEU HIS HIS VAL THR VAL ILE VAL TYR ASP LYS THR ASP SEQRES 35 A 521 PRO ASP GLU ARG LYS LYS LEU ASP GLU LEU PHE ASN ILE SEQRES 36 A 521 LEU VAL ASP GLU ALA ALA ALA GLU GLY TYR GLY GLU TYR SEQRES 37 A 521 ARG THR HIS ILE ARG TYR MET ASP ARG ILE ALA LYS THR SEQRES 38 A 521 TYR SER TRP ASN ASP ASN ALA LEU TRP LYS MET HIS GLU SEQRES 39 A 521 THR ILE LYS ASP ALA LEU ASP PRO ASN GLY ILE LEU ALA SEQRES 40 A 521 PRO GLY LYS SER GLY ILE TRP GLY LYS ASN ARG ARG LYS SEQRES 41 A 521 ALA SEQRES 1 B 521 MET ALA ALA PRO LEU PRO GLU GLY VAL SER ALA GLU ALA SEQRES 2 B 521 MET SER SER ALA LEU ASP ARG PHE ALA ARG ILE VAL GLY SEQRES 3 B 521 ALA ASP TRP VAL PHE THR GLU ASP LYS ILE THR PRO TYR SEQRES 4 B 521 GLU ASP PRO TYR THR ILE SER ASN ASP GLU THR GLU HIS SEQRES 5 B 521 ARG PRO TYR ALA ALA VAL ALA PRO ALA SER THR GLU GLU SEQRES 6 B 521 VAL GLN GLU ILE VAL ARG VAL ALA ASN GLU PHE GLY VAL SEQRES 7 B 521 PRO LEU TRP PRO VAL SER ARG GLY LYS ASN PHE ALA TYR SEQRES 8 B 521 GLY GLY ALA ALA PRO VAL MET SER GLY THR VAL VAL LEU SEQRES 9 B 521 ASP MET ASN ARG MET ASN ARG ILE LEU GLU VAL ASN GLU SEQRES 10 B 521 GLU PHE GLY TYR ALA LEU VAL GLU PRO GLY VAL SER TYR SEQRES 11 B 521 PHE GLU LEU TYR ASP TYR ILE GLN GLU LYS GLY LEU LYS SEQRES 12 B 521 LEU TRP ILE ASP VAL PRO ASP LEU GLY TRP GLY SER VAL SEQRES 13 B 521 VAL GLY ASN ALA LEU ASP HIS GLY ILE GLY TYR THR PRO SEQRES 14 B 521 TYR GLY ASP HIS PHE ALA MET GLN CYS GLY MET GLU VAL SEQRES 15 B 521 VAL LEU PRO ASN GLY GLU VAL VAL ARG THR GLY MET GLY SEQRES 16 B 521 ALA MET PRO GLY ASN ASN THR TRP GLN LEU PHE LYS TYR SEQRES 17 B 521 GLY TYR GLY PRO TYR VAL ASP GLY ILE PHE SER GLN SER SEQRES 18 B 521 ASN PHE GLY VAL VAL THR LYS MET GLY ILE TRP LEU MET SEQRES 19 B 521 PRO GLU PRO ALA GLY TYR ARG PRO TYR LEU ILE THR PHE SEQRES 20 B 521 GLU ASN GLU ASP ASP ILE GLU THR VAL THR GLU ARG LEU SEQRES 21 B 521 ARG PRO LEU LYS VAL ALA GLY VAL ILE GLN ASN GLY ALA SEQRES 22 B 521 THR VAL ARG SER LEU VAL LEU ASP ALA ALA ILE THR ARG SEQRES 23 B 521 THR LYS SER GLN TYR TYR ASP GLY ASP GLY PRO ILE PRO SEQRES 24 B 521 PRO SER VAL ALA LYS THR MET MET ALA ASP LEU ASP LEU SEQRES 25 B 521 GLY MET TRP ASN PHE CYS GLY ALA LEU TYR GLY PRO PRO SEQRES 26 B 521 PRO VAL MET ASP THR LEU TRP THR ALA ILE ARG ASP SER SEQRES 27 B 521 PHE ALA ASP ILE PRO GLY VAL LYS PHE TYR PHE PRO GLU SEQRES 28 B 521 ASP ARG ARG HIS LYS VAL ASP LEU LEU LEU HIS ARG ALA SEQRES 29 B 521 GLU THR MET LYS GLY VAL PRO LYS LEU THR GLU PHE ASN SEQRES 30 B 521 PHE LEU ASN TRP ASP GLY GLY GLY GLY HIS VAL GLY PHE SEQRES 31 B 521 SER PRO VAL SER PRO ILE THR GLY LYS ASP ALA ILE LYS SEQRES 32 B 521 GLN TYR ASN MET VAL SER SER ARG VAL ARG GLU TYR GLY SEQRES 33 B 521 PHE ASP TYR MET GLY LEU LEU ALA ILE GLY TRP ARG ASP SEQRES 34 B 521 LEU HIS HIS VAL THR VAL ILE VAL TYR ASP LYS THR ASP SEQRES 35 B 521 PRO ASP GLU ARG LYS LYS LEU ASP GLU LEU PHE ASN ILE SEQRES 36 B 521 LEU VAL ASP GLU ALA ALA ALA GLU GLY TYR GLY GLU TYR SEQRES 37 B 521 ARG THR HIS ILE ARG TYR MET ASP ARG ILE ALA LYS THR SEQRES 38 B 521 TYR SER TRP ASN ASP ASN ALA LEU TRP LYS MET HIS GLU SEQRES 39 B 521 THR ILE LYS ASP ALA LEU ASP PRO ASN GLY ILE LEU ALA SEQRES 40 B 521 PRO GLY LYS SER GLY ILE TRP GLY LYS ASN ARG ARG LYS SEQRES 41 B 521 ALA HET FAD A 601 53 HET NO3 A 602 4 HET NO3 A 603 4 HET PEG A 604 7 HET 1PE A 605 16 HET PE4 A 606 24 HET NO3 A 607 4 HET PEG A 608 7 HET EOL A 609 12 HET NO3 A 610 4 HET NO3 B 601 4 HET FAD B 602 53 HET NO3 B 603 4 HET NO3 B 604 4 HET NO3 B 605 4 HET PEG B 606 7 HET 1PE B 607 16 HET EOL B 608 12 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM NO3 NITRATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETNAM EOL 2-METHOXY-4-(PROP-2-EN-1-YL)PHENOL HETSYN 1PE PEG400 HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 HETSYN EOL EUGENOL FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 NO3 8(N O3 1-) FORMUL 6 PEG 3(C4 H10 O3) FORMUL 7 1PE 2(C10 H22 O6) FORMUL 8 PE4 C16 H34 O8 FORMUL 11 EOL 2(C10 H12 O2) FORMUL 21 HOH *917(H2 O) HELIX 1 AA1 SER A 10 GLY A 26 1 17 HELIX 2 AA2 THR A 32 GLU A 40 5 9 HELIX 3 AA3 SER A 62 GLY A 77 1 16 HELIX 4 AA4 SER A 129 GLY A 141 1 13 HELIX 5 AA5 SER A 155 ASP A 162 1 8 HELIX 6 AA6 HIS A 173 ALA A 175 5 3 HELIX 7 AA7 GLY A 193 MET A 197 5 5 HELIX 8 AA8 VAL A 214 SER A 219 5 6 HELIX 9 AA9 ASN A 249 ASP A 251 5 3 HELIX 10 AB1 ASP A 252 ALA A 266 1 15 HELIX 11 AB2 LEU A 278 ALA A 283 1 6 HELIX 12 AB3 THR A 287 TYR A 291 5 5 HELIX 13 AB4 PRO A 299 ASP A 311 1 13 HELIX 14 AB5 PRO A 324 ALA A 340 1 17 HELIX 15 AB6 PHE A 349 ARG A 353 5 5 HELIX 16 AB7 ASP A 358 MET A 367 1 10 HELIX 17 AB8 LEU A 373 TRP A 381 5 9 HELIX 18 AB9 THR A 397 TYR A 415 1 19 HELIX 19 AC1 ASP A 442 GLU A 463 1 22 HELIX 20 AC2 HIS A 471 ARG A 473 5 3 HELIX 21 AC3 TYR A 474 TYR A 482 1 9 HELIX 22 AC4 SER A 483 ASP A 501 1 19 HELIX 23 AC5 GLY A 509 ILE A 513 5 5 HELIX 24 AC6 SER B 10 GLY B 26 1 17 HELIX 25 AC7 GLU B 33 GLU B 40 5 8 HELIX 26 AC8 SER B 62 GLY B 77 1 16 HELIX 27 AC9 SER B 129 LYS B 140 1 12 HELIX 28 AD1 SER B 155 ASP B 162 1 8 HELIX 29 AD2 HIS B 173 ALA B 175 5 3 HELIX 30 AD3 GLY B 193 MET B 197 5 5 HELIX 31 AD4 VAL B 214 SER B 219 5 6 HELIX 32 AD5 ASN B 249 ASP B 251 5 3 HELIX 33 AD6 ASP B 252 ALA B 266 1 15 HELIX 34 AD7 LEU B 278 ALA B 283 1 6 HELIX 35 AD8 THR B 287 TYR B 291 5 5 HELIX 36 AD9 PRO B 299 ASP B 311 1 13 HELIX 37 AE1 PRO B 324 ALA B 340 1 17 HELIX 38 AE2 PHE B 349 ARG B 353 5 5 HELIX 39 AE3 ASP B 358 MET B 367 1 10 HELIX 40 AE4 LEU B 373 TRP B 381 5 9 HELIX 41 AE5 THR B 397 TYR B 415 1 19 HELIX 42 AE6 ASP B 442 GLU B 463 1 22 HELIX 43 AE7 HIS B 471 ARG B 473 5 3 HELIX 44 AE8 TYR B 474 LYS B 480 1 7 HELIX 45 AE9 SER B 483 ASP B 501 1 19 HELIX 46 AF1 GLY B 509 ILE B 513 5 5 SHEET 1 AA1 4 VAL A 30 PHE A 31 0 SHEET 2 AA1 4 ALA A 56 VAL A 58 -1 O ALA A 57 N PHE A 31 SHEET 3 AA1 4 VAL A 102 ASP A 105 1 O ASP A 105 N VAL A 58 SHEET 4 AA1 4 LEU A 80 VAL A 83 1 N VAL A 83 O LEU A 104 SHEET 1 AA2 5 ILE A 112 ASN A 116 0 SHEET 2 AA2 5 TYR A 121 VAL A 124 -1 O TYR A 121 N ASN A 116 SHEET 3 AA2 5 VAL A 225 TRP A 232 -1 O ILE A 231 N ALA A 122 SHEET 4 AA2 5 GLN A 177 VAL A 183 -1 N VAL A 183 O VAL A 225 SHEET 5 AA2 5 VAL A 189 ARG A 191 -1 O VAL A 190 N VAL A 182 SHEET 1 AA3 2 LEU A 144 TRP A 145 0 SHEET 2 AA3 2 MET A 234 PRO A 235 -1 O MET A 234 N TRP A 145 SHEET 1 AA4 7 LYS A 346 TYR A 348 0 SHEET 2 AA4 7 TYR A 240 PHE A 247 -1 N THR A 246 O LYS A 346 SHEET 3 AA4 7 TRP A 315 TYR A 322 -1 O PHE A 317 N ILE A 245 SHEET 4 AA4 7 THR A 274 SER A 277 -1 N ARG A 276 O ASN A 316 SHEET 5 AA4 7 GLY A 421 ILE A 425 -1 O LEU A 423 N VAL A 275 SHEET 6 AA4 7 ASP A 429 TYR A 438 -1 O HIS A 431 N ALA A 424 SHEET 7 AA4 7 GLY A 386 PHE A 390 -1 N PHE A 390 O THR A 434 SHEET 1 AA5 7 LYS A 346 TYR A 348 0 SHEET 2 AA5 7 TYR A 240 PHE A 247 -1 N THR A 246 O LYS A 346 SHEET 3 AA5 7 TRP A 315 TYR A 322 -1 O PHE A 317 N ILE A 245 SHEET 4 AA5 7 THR A 274 SER A 277 -1 N ARG A 276 O ASN A 316 SHEET 5 AA5 7 GLY A 421 ILE A 425 -1 O LEU A 423 N VAL A 275 SHEET 6 AA5 7 ASP A 429 TYR A 438 -1 O HIS A 431 N ALA A 424 SHEET 7 AA5 7 VAL A 393 PRO A 395 -1 N SER A 394 O LEU A 430 SHEET 1 AA6 4 VAL B 30 PHE B 31 0 SHEET 2 AA6 4 ALA B 56 VAL B 58 -1 O ALA B 57 N PHE B 31 SHEET 3 AA6 4 VAL B 102 ASP B 105 1 O ASP B 105 N VAL B 58 SHEET 4 AA6 4 LEU B 80 VAL B 83 1 N VAL B 83 O LEU B 104 SHEET 1 AA7 5 ILE B 112 ASN B 116 0 SHEET 2 AA7 5 TYR B 121 VAL B 124 -1 O TYR B 121 N ASN B 116 SHEET 3 AA7 5 VAL B 225 TRP B 232 -1 O MET B 229 N VAL B 124 SHEET 4 AA7 5 GLN B 177 VAL B 183 -1 N VAL B 183 O VAL B 225 SHEET 5 AA7 5 VAL B 189 ARG B 191 -1 O VAL B 190 N VAL B 182 SHEET 1 AA8 2 LEU B 144 TRP B 145 0 SHEET 2 AA8 2 MET B 234 PRO B 235 -1 O MET B 234 N TRP B 145 SHEET 1 AA9 7 LYS B 346 TYR B 348 0 SHEET 2 AA9 7 TYR B 240 PHE B 247 -1 N LEU B 244 O TYR B 348 SHEET 3 AA9 7 TRP B 315 TYR B 322 -1 O PHE B 317 N ILE B 245 SHEET 4 AA9 7 THR B 274 SER B 277 -1 N THR B 274 O CYS B 318 SHEET 5 AA9 7 GLY B 421 ILE B 425 -1 O GLY B 421 N SER B 277 SHEET 6 AA9 7 ASP B 429 TYR B 438 -1 O HIS B 431 N ALA B 424 SHEET 7 AA9 7 GLY B 386 PHE B 390 -1 N PHE B 390 O THR B 434 SHEET 1 AB1 7 LYS B 346 TYR B 348 0 SHEET 2 AB1 7 TYR B 240 PHE B 247 -1 N LEU B 244 O TYR B 348 SHEET 3 AB1 7 TRP B 315 TYR B 322 -1 O PHE B 317 N ILE B 245 SHEET 4 AB1 7 THR B 274 SER B 277 -1 N THR B 274 O CYS B 318 SHEET 5 AB1 7 GLY B 421 ILE B 425 -1 O GLY B 421 N SER B 277 SHEET 6 AB1 7 ASP B 429 TYR B 438 -1 O HIS B 431 N ALA B 424 SHEET 7 AB1 7 VAL B 393 PRO B 395 -1 N SER B 394 O LEU B 430 LINK NE2 HIS A 387 C8M FAD A 601 1555 1555 1.44 LINK NE2 HIS B 387 C8M FAD B 602 1555 1555 1.42 CRYST1 139.019 139.019 181.059 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007193 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005523 0.00000