HEADER DNA BINDING PROTEIN 07-MAR-24 8S8Q TITLE STRUCTURE OF THE INTERFILUM PARADOXUM LFY DNA-BINDING DOMAIN BOUND TO TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FLORICAULA/LEAFY-LIKE TRANSCRIPTION FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: INTERFILUM PARADOXUM LFY DNA-BINDING DOMAIN; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(P*GP*GP*TP*GP*CP*AP*GP*CP*GP*AP*CP*CP*GP*GP*TP*AP*GP*CP*AP*AP*CP*GP COMPND 9 *CP*A)-3'); COMPND 10 CHAIN: D; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(P*TP*GP*CP*GP*TP*TP*GP*CP*TP*AP*CP*CP*GP*GP*TP*CP*GP*CP*TP*GP*CP*AP COMPND 15 *CP*T)-3'); COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INTERFILUM PARADOXUM; SOURCE 3 ORGANISM_TAXID: 519231; SOURCE 4 GENE: KFL_007730030; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: INTERFILUM PARADOXUM; SOURCE 10 ORGANISM_TAXID: 519231; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: INTERFILUM PARADOXUM; SOURCE 14 ORGANISM_TAXID: 519231 KEYWDS TRANSCRIPTION FACTOR, PROTEIN-DNA COMPLEX, INTERFILUM PARADOXUM, DNA KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.VERHAGE,C.ZUBIETA,M.H.NANAO REVDAT 1 19-MAR-25 8S8Q 0 JRNL AUTH L.VERHAGE,C.ZUBIETA,M.H.NANAO JRNL TITL STRUCTURE OF THE INTERFILUM PARADOXUM LFY DNA-BINDING DOMAIN JRNL TITL 2 BOUND TO DNA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16920 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 891 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1246 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.4770 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.4920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2599 REMARK 3 NUCLEIC ACID ATOMS : 985 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 30 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.54000 REMARK 3 B22 (A**2) : -3.54000 REMARK 3 B33 (A**2) : 11.50000 REMARK 3 B12 (A**2) : -1.77000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.705 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.329 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.348 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 21.933 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3756 ; 0.005 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 3080 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5259 ; 1.714 ; 1.849 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7141 ; 0.538 ; 1.751 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 320 ; 5.851 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ;16.440 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 502 ;18.697 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 551 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3753 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 808 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1286 ; 5.979 ; 7.907 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1286 ; 5.963 ; 7.909 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1604 ; 8.882 ;14.204 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1605 ; 8.887 ;14.210 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2470 ; 7.782 ; 9.152 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2471 ; 7.781 ; 9.156 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3656 ;12.184 ;16.518 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4646 ;17.940 ;99.490 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4647 ;17.942 ;99.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8S8Q COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAR-24. REMARK 100 THE DEPOSITION ID IS D_1292137056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8734 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22512 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.720 REMARK 200 RESOLUTION RANGE LOW (A) : 47.430 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.14800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.79 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 3.37500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000 30%, 10MM MAGNESIUM ACETATE, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.27867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.55733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.91800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.19667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 11.63933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 349 REMARK 465 LEU A 350 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD ARG A 345 NH2 ARG B 310 3664 1.96 REMARK 500 CD ARG A 345 NE ARG B 310 3664 2.01 REMARK 500 NH1 ARG A 345 NH2 ARG B 310 3664 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 279 CA - CB - OG1 ANGL. DEV. = -13.2 DEGREES REMARK 500 MET A 285 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 345 CG - CD - NE ANGL. DEV. = 13.0 DEGREES REMARK 500 ARG A 345 CD - NE - CZ ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 345 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 DC D 12 O3' - P - O5' ANGL. DEV. = -12.2 DEGREES REMARK 500 DA D 14 O5' - P - OP1 ANGL. DEV. = -6.6 DEGREES REMARK 500 DA D 14 O4' - C1' - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC D 15 O3' - P - OP2 ANGL. DEV. = 7.4 DEGREES REMARK 500 DC D 15 O5' - P - OP2 ANGL. DEV. = -8.9 DEGREES REMARK 500 DC D 15 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG D 17 O3' - P - OP2 ANGL. DEV. = 6.7 DEGREES REMARK 500 DG C 6 O4' - C1' - N9 ANGL. DEV. = 1.9 DEGREES REMARK 500 DA C 14 O4' - C1' - N9 ANGL. DEV. = 5.8 DEGREES REMARK 500 DC C 15 O5' - P - OP2 ANGL. DEV. = -7.1 DEGREES REMARK 500 DC C 22 C3' - O3' - P ANGL. DEV. = 8.1 DEGREES REMARK 500 DA C 26 O3' - P - OP1 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 243 -169.37 -127.25 REMARK 500 GLN B 199 131.08 -38.81 REMARK 500 HIS B 204 81.16 -156.03 REMARK 500 SER B 291 60.26 63.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 248 0.09 SIDE CHAIN REMARK 500 ARG A 345 0.09 SIDE CHAIN REMARK 500 ARG B 264 0.09 SIDE CHAIN REMARK 500 ARG B 288 0.10 SIDE CHAIN REMARK 500 ARG B 310 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF1 8S8Q A 189 349 UNP A0A1Y1IRK2_KLENI DBREF2 8S8Q A A0A1Y1IRK2 226 385 DBREF 8S8Q D 5 28 PDB 8S8Q 8S8Q 5 28 DBREF1 8S8Q B 189 349 UNP A0A1Y1IRK2_KLENI DBREF2 8S8Q B A0A1Y1IRK2 226 385 DBREF 8S8Q C 5 28 PDB 8S8Q 8S8Q 5 28 SEQADV 8S8Q GLN A 215 UNP A0A1Y1IRK GLU 252 CONFLICT SEQADV 8S8Q GLU A 218 UNP A0A1Y1IRK GLY 255 CONFLICT SEQADV 8S8Q THR A 232 UNP A0A1Y1IRK LYS 269 CONFLICT SEQADV 8S8Q LYS A 234 UNP A0A1Y1IRK THR 271 CONFLICT SEQADV 8S8Q PRO A 240 UNP A0A1Y1IRK ALA 277 CONFLICT SEQADV 8S8Q ALA A 286 UNP A0A1Y1IRK THR 323 CONFLICT SEQADV 8S8Q LYS A 290 UNP A0A1Y1IRK ARG 327 CONFLICT SEQADV 8S8Q SER A 291 UNP A0A1Y1IRK LYS 328 CONFLICT SEQADV 8S8Q GLN A 322 UNP A0A1Y1IRK LEU 359 CONFLICT SEQADV 8S8Q HIS A 325 UNP A0A1Y1IRK GLN 362 CONFLICT SEQADV 8S8Q MET A 338 UNP A0A1Y1IRK LEU 375 CONFLICT SEQADV 8S8Q GLN A 348 UNP A0A1Y1IRK INSERTION SEQADV 8S8Q LEU A 350 UNP A0A1Y1IRK EXPRESSION TAG SEQADV 8S8Q GLN B 215 UNP A0A1Y1IRK GLU 252 CONFLICT SEQADV 8S8Q GLU B 218 UNP A0A1Y1IRK GLY 255 CONFLICT SEQADV 8S8Q THR B 232 UNP A0A1Y1IRK LYS 269 CONFLICT SEQADV 8S8Q LYS B 234 UNP A0A1Y1IRK THR 271 CONFLICT SEQADV 8S8Q PRO B 240 UNP A0A1Y1IRK ALA 277 CONFLICT SEQADV 8S8Q ALA B 286 UNP A0A1Y1IRK THR 323 CONFLICT SEQADV 8S8Q LYS B 290 UNP A0A1Y1IRK ARG 327 CONFLICT SEQADV 8S8Q SER B 291 UNP A0A1Y1IRK LYS 328 CONFLICT SEQADV 8S8Q GLN B 322 UNP A0A1Y1IRK LEU 359 CONFLICT SEQADV 8S8Q HIS B 325 UNP A0A1Y1IRK GLN 362 CONFLICT SEQADV 8S8Q MET B 338 UNP A0A1Y1IRK LEU 375 CONFLICT SEQADV 8S8Q GLN B 348 UNP A0A1Y1IRK INSERTION SEQADV 8S8Q LEU B 350 UNP A0A1Y1IRK EXPRESSION TAG SEQRES 1 A 162 SER ARG GLY PRO ALA PHE GLN VAL THR ALA GLN GLY GLU SEQRES 2 A 162 ASP GLY HIS GLY LYS LYS GLN GLY LEU ASP TYR LEU PHE SEQRES 3 A 162 GLN LEU TYR GLU GLU ALA GLY ARG ILE LEU GLU GLU ILE SEQRES 4 A 162 ARG VAL GLN GLU THR ALA LYS GLY LYS LYS PRO SER PRO SEQRES 5 A 162 LYS VAL ASN ASN LEU VAL TYR ARG TYR ALA LYS GLN ARG SEQRES 6 A 162 GLY MET GLY PHE ILE ASN LYS PRO LYS MET ARG GLN TYR SEQRES 7 A 162 LEU HIS CYS TYR ALA LEU HIS CYS LEU ASP PRO GLY THR SEQRES 8 A 162 SER ASN ALA ILE ARG MET ALA CYS ARG ASP LYS SER LYS SEQRES 9 A 162 THR LEU GLN ALA TRP ALA GLU CYS CYS TYR GLU PRO LEU SEQRES 10 A 162 LEU GLN MET ALA ARG VAL ARG GLY TYR ASN LEU GLU SER SEQRES 11 A 162 LEU PHE GLN GLN SER PRO HIS LEU ALA ILE TRP ASN VAL SEQRES 12 A 162 PRO LYS GLN LEU GLU LYS MET CYS GLU GLU GLU LYS ASP SEQRES 13 A 162 ARG LEU GLY GLN GLU LEU SEQRES 1 D 24 DG DG DT DG DC DA DG DC DG DA DC DC DG SEQRES 2 D 24 DG DT DA DG DC DA DA DC DG DC DA SEQRES 1 B 162 SER ARG GLY PRO ALA PHE GLN VAL THR ALA GLN GLY GLU SEQRES 2 B 162 ASP GLY HIS GLY LYS LYS GLN GLY LEU ASP TYR LEU PHE SEQRES 3 B 162 GLN LEU TYR GLU GLU ALA GLY ARG ILE LEU GLU GLU ILE SEQRES 4 B 162 ARG VAL GLN GLU THR ALA LYS GLY LYS LYS PRO SER PRO SEQRES 5 B 162 LYS VAL ASN ASN LEU VAL TYR ARG TYR ALA LYS GLN ARG SEQRES 6 B 162 GLY MET GLY PHE ILE ASN LYS PRO LYS MET ARG GLN TYR SEQRES 7 B 162 LEU HIS CYS TYR ALA LEU HIS CYS LEU ASP PRO GLY THR SEQRES 8 B 162 SER ASN ALA ILE ARG MET ALA CYS ARG ASP LYS SER LYS SEQRES 9 B 162 THR LEU GLN ALA TRP ALA GLU CYS CYS TYR GLU PRO LEU SEQRES 10 B 162 LEU GLN MET ALA ARG VAL ARG GLY TYR ASN LEU GLU SER SEQRES 11 B 162 LEU PHE GLN GLN SER PRO HIS LEU ALA ILE TRP ASN VAL SEQRES 12 B 162 PRO LYS GLN LEU GLU LYS MET CYS GLU GLU GLU LYS ASP SEQRES 13 B 162 ARG LEU GLY GLN GLU LEU SEQRES 1 C 24 DT DG DC DG DT DT DG DC DT DA DC DC DG SEQRES 2 C 24 DG DT DC DG DC DT DG DC DA DC DT FORMUL 5 HOH *30(H2 O) HELIX 1 AA1 GLY A 209 GLY A 235 1 27 HELIX 2 AA2 ASN A 243 ARG A 253 1 11 HELIX 3 AA3 ASN A 259 ASP A 276 1 18 HELIX 4 AA4 ASP A 276 SER A 291 1 16 HELIX 5 AA5 THR A 293 CYS A 301 1 9 HELIX 6 AA6 CYS A 301 GLY A 313 1 13 HELIX 7 AA7 ASN A 315 SER A 323 1 9 HELIX 8 AA8 PRO A 332 GLY A 347 1 16 HELIX 9 AA9 LEU B 210 LYS B 234 1 25 HELIX 10 AB1 ASN B 243 ARG B 253 1 11 HELIX 11 AB2 ASN B 259 ASP B 276 1 18 HELIX 12 AB3 ASP B 276 ASP B 289 1 14 HELIX 13 AB4 THR B 293 CYS B 301 1 9 HELIX 14 AB5 TYR B 302 VAL B 311 1 10 HELIX 15 AB6 ASN B 315 SER B 323 1 9 HELIX 16 AB7 PRO B 332 GLU B 341 1 10 HELIX 17 AB8 GLU B 341 LEU B 346 1 6 SHEET 1 AA1 2 PHE B 194 GLN B 195 0 SHEET 2 AA1 2 GLN B 208 GLY B 209 1 O GLN B 208 N GLN B 195 CRYST1 144.890 144.890 69.836 90.00 90.00 120.00 P 61 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006902 0.003985 0.000000 0.00000 SCALE2 0.000000 0.007969 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014319 0.00000 TER 1292 GLN A 348 TER 1790 DA D 28 TER 3099 LEU B 350 TER 3588 DT C 28 HETATM 3589 O HOH A 401 32.061 36.900 18.010 1.00 69.33 O HETATM 3590 O HOH A 402 52.300 52.526 11.495 1.00 67.93 O HETATM 3591 O HOH A 403 26.826 58.584 -6.787 1.00 96.78 O HETATM 3592 O HOH A 404 36.380 40.016 1.762 1.00 31.59 O HETATM 3593 O HOH A 405 35.740 58.209 -5.181 1.00 38.33 O HETATM 3594 O HOH A 406 38.100 42.768 -14.177 1.00 52.23 O HETATM 3595 O HOH A 407 28.094 27.748 7.761 1.00 49.08 O HETATM 3596 O HOH A 408 21.102 32.828 6.086 1.00 83.80 O HETATM 3597 O HOH D 101 41.662 7.531 31.929 1.00 87.20 O HETATM 3598 O HOH D 102 31.727 30.289 11.826 1.00 47.27 O HETATM 3599 O HOH D 103 39.460 10.659 35.871 1.00 90.33 O HETATM 3600 O HOH D 104 31.393 17.434 14.059 1.00 64.17 O HETATM 3601 O HOH D 105 33.967 31.774 -20.884 1.00 66.04 O HETATM 3602 O HOH D 106 27.822 49.931 -27.625 1.00 92.70 O HETATM 3603 O HOH D 107 34.275 18.789 15.024 1.00 82.41 O HETATM 3604 O HOH D 108 48.044 16.510 22.375 1.00 76.58 O HETATM 3605 O HOH D 109 34.429 12.692 33.701 1.00 98.05 O HETATM 3606 O HOH B 401 39.347 5.982 7.618 1.00 53.03 O HETATM 3607 O HOH B 402 44.952 18.397 20.309 1.00 41.63 O HETATM 3608 O HOH B 403 49.276 20.026 6.264 1.00 34.10 O HETATM 3609 O HOH B 404 63.279 34.547 7.097 1.00 65.08 O HETATM 3610 O HOH B 405 71.456 9.992 10.583 1.00 56.81 O HETATM 3611 O HOH B 406 74.976 25.972 3.564 1.00 97.37 O HETATM 3612 O HOH B 407 71.055 19.528 7.385 1.00 44.95 O HETATM 3613 O HOH C 101 30.094 25.571 -10.447 1.00 59.87 O HETATM 3614 O HOH C 102 33.620 29.984 -33.278 1.00 86.27 O HETATM 3615 O HOH C 103 40.976 21.771 -6.141 1.00 50.47 O HETATM 3616 O HOH C 104 24.498 37.579 -7.941 1.00 65.23 O HETATM 3617 O HOH C 105 27.643 33.541 -33.508 1.00 94.56 O HETATM 3618 O HOH C 106 41.033 33.208 -31.327 1.00 80.34 O MASTER 350 0 0 17 2 0 0 6 3614 4 0 30 END