HEADER ANTIVIRAL PROTEIN 06-APR-23 8SD2 TITLE CRYSTAL STRUCTURE OF THE A/PUERTO RICO/8/1934 (H1N1) INFLUENZA VIRUS TITLE 2 HEMAGGLUTININ IN COMPLEX WITH SMALL MOLECULE FUSION INHIBITOR TITLE 3 COMPOUND 4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ HA1 CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMAGGLUTININ HA2 CHAIN; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/1934 SOURCE 3 H1N1); SOURCE 4 ORGANISM_TAXID: 211044; SOURCE 5 STRAIN: A/PUERTO RICO/8/1934 H1N1; SOURCE 6 GENE: HA; SOURCE 7 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 8 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (STRAIN A/PUERTO RICO/8/1934 SOURCE 12 H1N1); SOURCE 13 ORGANISM_TAXID: 211044; SOURCE 14 STRAIN: A/PUERTO RICO/8/1934 H1N1; SOURCE 15 GENE: HA; SOURCE 16 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 17 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 18 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS INFLUENZA VIRUS, FUSION INHIBITOR, ANTIVIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.U.KADAM,X.Y.ZHU,I.A.WILSON REVDAT 2 23-OCT-24 8SD2 1 REMARK REVDAT 1 05-JUN-24 8SD2 0 JRNL AUTH S.KITAMURA,T.H.LIN,C.D.LEE,A.TAKAMURA,R.U.KADAM,D.ZHANG, JRNL AUTH 2 X.ZHU,L.DADA,E.NAGAI,W.YU,Y.YAO,K.B.SHARPLESS,I.A.WILSON, JRNL AUTH 3 D.W.WOLAN JRNL TITL ULTRAPOTENT INFLUENZA HEMAGGLUTININ FUSION INHIBITORS JRNL TITL 2 DEVELOPED THROUGH SUFEX-ENABLED HIGH-THROUGHPUT MEDICINAL JRNL TITL 3 CHEMISTRY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 77121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 38753503 JRNL DOI 10.1073/PNAS.2310677121 REMARK 2 REMARK 2 RESOLUTION. 2.81 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.81 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.58 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17813 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.261 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 997 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.81 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1310 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.4450 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.4450 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3783 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 94 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.841 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.352 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.332 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.841 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.922 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3976 ; 0.007 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 3538 ; 0.001 ; 0.015 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5417 ; 1.397 ; 1.677 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8128 ; 1.318 ; 1.607 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 491 ; 6.833 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 200 ;33.668 ;23.500 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 603 ;15.251 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.873 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 526 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4602 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 930 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1970 ; 7.022 ; 8.667 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1969 ; 7.006 ; 8.666 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2459 ;10.306 ;13.006 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2460 ;10.306 ;13.009 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2005 ; 7.152 ; 8.871 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2003 ; 7.146 ; 8.870 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2956 ;10.502 ;13.186 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 15555 ;14.621 ;61.763 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 15547 ;14.623 ;61.796 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SD2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273563. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03317 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.810 REMARK 200 RESOLUTION RANGE LOW (A) : 44.580 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 35.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 39.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 1.00000 REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M LITHIUM CHLORIDE, 0.1 M MES, PH 6, REMARK 280 20% WT/VOL PEG6000, PH 6.0, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 83.31900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.31900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 83.31900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.31900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 83.31900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 83.31900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 83.31900 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 83.31900 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 83.31900 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 83.31900 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 83.31900 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 83.31900 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 83.31900 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 83.31900 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 83.31900 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 83.31900 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 83.31900 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 83.31900 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 83.31900 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.31900 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 83.31900 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 83.31900 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 83.31900 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 83.31900 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 83.31900 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 83.31900 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 83.31900 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 83.31900 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 83.31900 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 83.31900 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 83.31900 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 83.31900 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 83.31900 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 83.31900 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 83.31900 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 83.31900 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 30960 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 62580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 10 REMARK 465 ILE A 326 REMARK 465 GLN A 327 REMARK 465 SER A 328 REMARK 465 ARG A 329 REMARK 465 LYS B 172 REMARK 465 VAL B 173 REMARK 465 ASP B 174 REMARK 465 GLY B 175 REMARK 465 VAL B 176 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 12 OG1 CG2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 GLU A 276 CG CD OE1 OE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 LYS A 313 CG CD CE NZ REMARK 470 GLU B 11 CG CD OE1 OE2 REMARK 470 HIS B 26 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 27 CG CD OE1 NE2 REMARK 470 GLU B 29 CG CD OE1 OE2 REMARK 470 SER B 32 OG REMARK 470 LYS B 39 CG CD CE NZ REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 LYS B 116 CG CD CE NZ REMARK 470 ASN B 117 CG OD1 ND2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LEU B 126 CG CD1 CD2 REMARK 470 LYS B 127 CG CD CE NZ REMARK 470 LYS B 131 CG CD CE NZ REMARK 470 GLU B 132 CG CD OE1 OE2 REMARK 470 ILE B 133 CG1 CG2 CD1 REMARK 470 ASN B 135 CG OD1 ND2 REMARK 470 PHE B 138 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 139 CG CD OE1 OE2 REMARK 470 PHE B 140 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS B 143 CG CD CE NZ REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 MET B 149 CG SD CE REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 SER B 151 OG REMARK 470 TYR B 157 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP B 158 CG OD1 OD2 REMARK 470 TYR B 159 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 161 CG CD CE NZ REMARK 470 GLU B 164 CG CD OE1 OE2 REMARK 470 LEU B 168 CG CD1 CD2 REMARK 470 ASN B 169 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 139 64.85 -113.45 REMARK 500 GLN A 196 -41.35 68.60 REMARK 500 ASN A 199 51.88 -107.73 REMARK 500 LYS B 127 -133.44 54.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5W5S RELATED DB: PDB REMARK 900 5W5S CONTAINS THE SAME PROTEIN WITH DIFFERENT SMALL MOLECULE DBREF 8SD2 A 11 329 UNP P03452 HEMA_I34A1 18 343 DBREF 8SD2 B 1 176 UNP P03452 HEMA_I34A1 344 519 SEQADV 8SD2 GLY A 10 UNP P03452 EXPRESSION TAG SEQRES 1 A 327 GLY ASP THR ILE CYS ILE GLY TYR HIS ALA ASN ASN SER SEQRES 2 A 327 THR ASP THR VAL ASP THR VAL LEU GLU LYS ASN VAL THR SEQRES 3 A 327 VAL THR HIS SER VAL ASN LEU LEU GLU ASP SER HIS ASN SEQRES 4 A 327 GLY LYS LEU CYS ARG LEU LYS GLY ILE ALA PRO LEU GLN SEQRES 5 A 327 LEU GLY LYS CYS ASN ILE ALA GLY TRP LEU LEU GLY ASN SEQRES 6 A 327 PRO GLU CYS ASP PRO LEU LEU PRO VAL ARG SER TRP SER SEQRES 7 A 327 TYR ILE VAL GLU THR PRO ASN SER GLU ASN GLY ILE CYS SEQRES 8 A 327 TYR PRO GLY ASP PHE ILE ASP TYR GLU GLU LEU ARG GLU SEQRES 9 A 327 GLN LEU SER SER VAL SER SER PHE GLU ARG PHE GLU ILE SEQRES 10 A 327 PHE PRO LYS GLU SER SER TRP PRO ASN HIS ASN THR ASN SEQRES 11 A 327 GLY VAL THR ALA ALA CYS SER HIS GLU GLY LYS SER SER SEQRES 12 A 327 PHE TYR ARG ASN LEU LEU TRP LEU THR GLU LYS GLU GLY SEQRES 13 A 327 SER TYR PRO LYS LEU LYS ASN SER TYR VAL ASN LYS LYS SEQRES 14 A 327 GLY LYS GLU VAL LEU VAL LEU TRP GLY ILE HIS HIS PRO SEQRES 15 A 327 PRO ASN SER LYS GLU GLN GLN ASN LEU TYR GLN ASN GLU SEQRES 16 A 327 ASN ALA TYR VAL SER VAL VAL THR SER ASN TYR ASN ARG SEQRES 17 A 327 ARG PHE THR PRO GLU ILE ALA GLU ARG PRO LYS VAL ARG SEQRES 18 A 327 ASP GLN ALA GLY ARG MET ASN TYR TYR TRP THR LEU LEU SEQRES 19 A 327 LYS PRO GLY ASP THR ILE ILE PHE GLU ALA ASN GLY ASN SEQRES 20 A 327 LEU ILE ALA PRO MET TYR ALA PHE ALA LEU SER ARG GLY SEQRES 21 A 327 PHE GLY SER GLY ILE ILE THR SER ASN ALA SER MET HIS SEQRES 22 A 327 GLU CYS ASN THR LYS CYS GLN THR PRO LEU GLY ALA ILE SEQRES 23 A 327 ASN SER SER LEU PRO TYR GLN ASN ILE HIS PRO VAL THR SEQRES 24 A 327 ILE GLY GLU CYS PRO LYS TYR VAL ARG SER ALA LYS LEU SEQRES 25 A 327 ARG MET VAL THR GLY LEU ARG ASN ILE PRO SER ILE GLN SEQRES 26 A 327 SER ARG SEQRES 1 B 176 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU GLY GLY SEQRES 2 B 176 TRP THR GLY MET ILE ASP GLY TRP TYR GLY TYR HIS HIS SEQRES 3 B 176 GLN ASN GLU GLN GLY SER GLY TYR ALA ALA ASP GLN LYS SEQRES 4 B 176 SER THR GLN ASN ALA ILE ASN GLY ILE THR ASN LYS VAL SEQRES 5 B 176 ASN THR VAL ILE GLU LYS MET ASN ILE GLN PHE THR ALA SEQRES 6 B 176 VAL GLY LYS GLU PHE ASN LYS LEU GLU LYS ARG MET GLU SEQRES 7 B 176 ASN LEU ASN LYS LYS VAL ASP ASP GLY PHE LEU ASP ILE SEQRES 8 B 176 TRP THR TYR ASN ALA GLU LEU LEU VAL LEU LEU GLU ASN SEQRES 9 B 176 GLU ARG THR LEU ASP PHE HIS ASP SER ASN VAL LYS ASN SEQRES 10 B 176 LEU TYR GLU LYS VAL LYS SER GLN LEU LYS ASN ASN ALA SEQRES 11 B 176 LYS GLU ILE GLY ASN GLY CYS PHE GLU PHE TYR HIS LYS SEQRES 12 B 176 CYS ASP ASN GLU CYS MET GLU SER VAL ARG ASN GLY THR SEQRES 13 B 176 TYR ASP TYR PRO LYS TYR SER GLU GLU SER LYS LEU ASN SEQRES 14 B 176 ARG GLU LYS VAL ASP GLY VAL HET NAG C 1 14 HET NAG C 2 14 HET NAG A 401 14 HET NAG A 402 14 HET NO3 A 403 4 HET FIE B 201 34 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM NO3 NITRATE ION HETNAM FIE (S~6~S)-N-{3-CHLORO-4-[(2S)-2-PHENYLMORPHOLINE-4- HETNAM 2 FIE CARBONYL]PHENYL}-5,7-DIHYDRO-6H-PYRROLO[3,4- HETNAM 3 FIE B]PYRIDINE-6-SULFONIMIDOYL FLUORIDE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 6 NO3 N O3 1- FORMUL 7 FIE C24 H22 CL F N4 O3 S FORMUL 8 HOH *41(H2 O) HELIX 1 AA1 ASN A 65 GLY A 72 1 8 HELIX 2 AA2 ASP A 104 SER A 113 1 10 HELIX 3 AA3 PRO A 125 TRP A 127 1 6 HELIX 4 AA4 ASN A 187 GLN A 196 1 10 HELIX 5 AA5 ASP B 37 MET B 59 1 23 HELIX 6 AA6 GLU B 74 LYS B 127 1 54 HELIX 7 AA7 ASP B 145 ASN B 154 1 10 HELIX 8 AA8 TYR B 159 GLU B 171 1 13 SHEET 1 AA1 5 GLY B 31 ALA B 36 0 SHEET 2 AA1 5 TYR B 22 ASN B 28 -1 N TYR B 24 O ALA B 35 SHEET 3 AA1 5 THR A 12 TYR A 17 -1 N CYS A 14 O HIS B 25 SHEET 4 AA1 5 CYS B 137 PHE B 140 -1 O PHE B 138 N ILE A 13 SHEET 5 AA1 5 ALA B 130 GLU B 132 -1 N LYS B 131 O GLU B 139 SHEET 1 AA2 2 THR A 25 VAL A 26 0 SHEET 2 AA2 2 VAL A 34 THR A 35 -1 O VAL A 34 N VAL A 26 SHEET 1 AA3 2 SER A 39 ASN A 41 0 SHEET 2 AA3 2 ARG A 315 VAL A 317 -1 O MET A 316 N VAL A 40 SHEET 1 AA4 3 LEU A 43 GLU A 44 0 SHEET 2 AA4 3 TYR A 294 GLN A 295 1 O TYR A 294 N GLU A 44 SHEET 3 AA4 3 LYS A 307 TYR A 308 1 O LYS A 307 N GLN A 295 SHEET 1 AA5 2 LEU A 51 LEU A 54 0 SHEET 2 AA5 2 MET A 274 THR A 279 1 O CYS A 277 N ARG A 53 SHEET 1 AA6 3 LEU A 59 GLN A 60 0 SHEET 2 AA6 3 ILE A 87 GLU A 89 1 O VAL A 88 N LEU A 59 SHEET 3 AA6 3 ILE A 267 THR A 269 1 O ILE A 268 N ILE A 87 SHEET 1 AA7 6 VAL A 82 SER A 83A 0 SHEET 2 AA7 6 VAL A 115 GLU A 122 -1 O PHE A 118 N ARG A 83 SHEET 3 AA7 6 TYR A 256 ARG A 262 -1 O SER A 261 N SER A 116 SHEET 4 AA7 6 GLU A 175 HIS A 184 -1 N LEU A 177 O PHE A 258 SHEET 5 AA7 6 LEU A 251 PRO A 254 -1 O ILE A 252 N GLY A 181 SHEET 6 AA7 6 LEU A 151 TRP A 153 -1 N LEU A 152 O ALA A 253 SHEET 1 AA8 5 VAL A 82 SER A 83A 0 SHEET 2 AA8 5 VAL A 115 GLU A 122 -1 O PHE A 118 N ARG A 83 SHEET 3 AA8 5 TYR A 256 ARG A 262 -1 O SER A 261 N SER A 116 SHEET 4 AA8 5 GLU A 175 HIS A 184 -1 N LEU A 177 O PHE A 258 SHEET 5 AA8 5 ARG A 229 LEU A 237 -1 O ARG A 229 N HIS A 184 SHEET 1 AA9 2 THR A 136 HIS A 141 0 SHEET 2 AA9 2 LYS A 144 SER A 146 -1 O LYS A 144 N HIS A 141 SHEET 1 AB1 4 LEU A 164 VAL A 169 0 SHEET 2 AB1 4 THR A 242 ALA A 247 -1 O PHE A 245 N ASN A 166 SHEET 3 AB1 4 VAL A 202 VAL A 205 -1 N SER A 203 O GLU A 246 SHEET 4 AB1 4 ASN A 210 PHE A 213 -1 O PHE A 213 N VAL A 202 SHEET 1 AB2 3 GLY A 286 ILE A 288 0 SHEET 2 AB2 3 CYS A 281 THR A 283 -1 N CYS A 281 O ILE A 288 SHEET 3 AB2 3 ILE A 302 GLY A 303 -1 O ILE A 302 N GLN A 282 SSBOND 1 CYS A 14 CYS B 137 1555 1555 2.02 SSBOND 2 CYS A 52 CYS A 277 1555 1555 2.05 SSBOND 3 CYS A 64 CYS A 76 1555 1555 2.04 SSBOND 4 CYS A 97 CYS A 139 1555 1555 2.06 SSBOND 5 CYS A 281 CYS A 305 1555 1555 2.06 SSBOND 6 CYS B 144 CYS B 148 1555 1555 2.06 LINK ND2 ASN A 21 C1 NAG A 402 1555 1555 1.45 LINK ND2 ASN A 33 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 289 C1 NAG A 401 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.35 CRYST1 166.638 166.638 166.638 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006001 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006001 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006001 0.00000