HEADER IMMUNE SYSTEM 06-APR-23 8SDF TITLE CRYSTAL STRUCTURE OF SARS-COV-2 RECEPTOR BINDING DOMAIN IN COMPLEX TITLE 2 WITH NEUTRALIZING ANTIBODY CC25.4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: Z, A; COMPND 4 FRAGMENT: RECEPTOR BINDING DOMAIN, UNP RESIDUES 333-530; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: NEUTRALIZING ANTIBODY CC25.4 HEAVY CHAIN; COMPND 8 CHAIN: H, B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: NEUTRALIZING ANTIBODY CC25.4 LIGHT CHAIN; COMPND 12 CHAIN: L, C; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_COMMON: HUMAN; SOURCE 18 ORGANISM_TAXID: 9606; SOURCE 19 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 20 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS SARS-COV-2, CORONAVIRUS, ANTIBODY, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.YUAN,I.A.WILSON REVDAT 2 20-MAR-24 8SDF 1 JRNL REVDAT 1 13-MAR-24 8SDF 0 JRNL AUTH G.SONG,M.YUAN,H.LIU,T.CAPOZZOLA,R.N.LIN,J.L.TORRES,W.T.HE, JRNL AUTH 2 R.MUSHARRAFIEH,K.DUEKER,P.ZHOU,S.CALLAGHAN,N.MISHRA,P.YONG, JRNL AUTH 3 F.ANZANELLO,G.AVILLION,A.L.VO,X.LI,M.MAKHDOOMI,Z.FENG,X.ZHU, JRNL AUTH 4 L.PENG,D.NEMAZEE,Y.SAFONOVA,B.BRINEY,A.B.WARD,D.R.BURTON, JRNL AUTH 5 I.A.WILSON,R.ANDRABI JRNL TITL BROADLY NEUTRALIZING ANTIBODIES TARGETING A CONSERVED SILENT JRNL TITL 2 FACE OF SPIKE RBD RESIST EXTREME SARS-COV-2 ANTIGENIC DRIFT. JRNL REF BIORXIV 2023 JRNL REFN ISSN 2692-8205 JRNL PMID 37162858 JRNL DOI 10.1101/2023.04.26.538488 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.2_4158: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 58.05 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 126382 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.130 REMARK 3 FREE R VALUE TEST SET COUNT : 6483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 58.0500 - 5.5500 0.98 4034 227 0.1722 0.1872 REMARK 3 2 5.5500 - 4.4100 0.99 4070 182 0.1446 0.1648 REMARK 3 3 4.4100 - 3.8500 1.00 4050 193 0.1472 0.1552 REMARK 3 4 3.8500 - 3.5000 1.00 4055 217 0.1600 0.1983 REMARK 3 5 3.5000 - 3.2500 1.00 4022 218 0.1696 0.2144 REMARK 3 6 3.2500 - 3.0600 0.98 3905 223 0.1717 0.2096 REMARK 3 7 3.0600 - 2.9000 0.99 4005 218 0.1845 0.2064 REMARK 3 8 2.9000 - 2.7800 1.00 4024 214 0.1897 0.2294 REMARK 3 9 2.7800 - 2.6700 0.99 4019 207 0.1862 0.2245 REMARK 3 10 2.6700 - 2.5800 0.99 3999 219 0.1896 0.2330 REMARK 3 11 2.5800 - 2.5000 0.99 4010 218 0.1959 0.2356 REMARK 3 12 2.5000 - 2.4300 1.00 3981 208 0.1949 0.2451 REMARK 3 13 2.4300 - 2.3600 1.00 4047 225 0.1950 0.2375 REMARK 3 14 2.3600 - 2.3000 1.00 3996 211 0.1919 0.2361 REMARK 3 15 2.3000 - 2.2500 0.99 3997 211 0.2000 0.2434 REMARK 3 16 2.2500 - 2.2000 0.98 3920 234 0.2039 0.2522 REMARK 3 17 2.2000 - 2.1600 0.99 3945 242 0.2106 0.2552 REMARK 3 18 2.1600 - 2.1200 0.99 3989 243 0.2144 0.2750 REMARK 3 19 2.1200 - 2.0800 0.99 3927 248 0.2119 0.2349 REMARK 3 20 2.0800 - 2.0500 1.00 4052 208 0.2272 0.2759 REMARK 3 21 2.0500 - 2.0100 0.99 3948 209 0.2409 0.3131 REMARK 3 22 2.0100 - 1.9800 0.99 4049 234 0.2568 0.3204 REMARK 3 23 1.9800 - 1.9500 0.99 3969 207 0.2613 0.2891 REMARK 3 24 1.9500 - 1.9300 0.99 4030 187 0.2742 0.3647 REMARK 3 25 1.9300 - 1.9000 0.99 4037 198 0.2957 0.3100 REMARK 3 26 1.9000 - 1.8700 0.99 3982 192 0.2987 0.3180 REMARK 3 27 1.8700 - 1.8500 0.99 4000 235 0.3196 0.3346 REMARK 3 28 1.8500 - 1.8300 0.99 3982 235 0.3289 0.3773 REMARK 3 29 1.8300 - 1.8100 0.99 3923 219 0.3595 0.3723 REMARK 3 30 1.8100 - 1.7900 0.97 3932 201 0.4023 0.4451 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 9990 REMARK 3 ANGLE : 1.090 13649 REMARK 3 CHIRALITY : 0.066 1508 REMARK 3 PLANARITY : 0.012 1762 REMARK 3 DIHEDRAL : 8.596 1423 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SDF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273571. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126496 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 82.713 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.82 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 65% MPD AND 0.1 M BICINE PH 9.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 71.49800 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: Z, H, L, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS Z 528 REMARK 465 LYS Z 529 REMARK 465 SER Z 530 REMARK 465 GLY Z 531 REMARK 465 HIS Z 532 REMARK 465 HIS Z 533 REMARK 465 HIS Z 534 REMARK 465 HIS Z 535 REMARK 465 HIS Z 536 REMARK 465 HIS Z 537 REMARK 465 SER H 214 REMARK 465 CYS H 215 REMARK 465 GLU L 210 REMARK 465 CYS L 211 REMARK 465 SER L 212 REMARK 465 THR A 333 REMARK 465 LYS A 528 REMARK 465 LYS A 529 REMARK 465 SER A 530 REMARK 465 GLY A 531 REMARK 465 HIS A 532 REMARK 465 HIS A 533 REMARK 465 HIS A 534 REMARK 465 HIS A 535 REMARK 465 HIS A 536 REMARK 465 HIS A 537 REMARK 465 SER B 126 REMARK 465 SER B 127 REMARK 465 LYS B 128 REMARK 465 SER B 129 REMARK 465 THR B 130 REMARK 465 SER B 131 REMARK 465 GLY B 132 REMARK 465 GLY B 133 REMARK 465 THR B 134 REMARK 465 ALA B 135 REMARK 465 SER B 214 REMARK 465 CYS B 215 REMARK 465 GLU C 210 REMARK 465 CYS C 211 REMARK 465 SER C 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS H 213 CG CD CE NZ REMARK 470 LYS L 110 CG CD CE NZ REMARK 470 LYS L 149 CG CD CE NZ REMARK 470 SER L 152 OG REMARK 470 SER L 153 OG REMARK 470 VAL L 155 CG1 CG2 REMARK 470 LYS L 156 CG CD CE NZ REMARK 470 SER L 179 OG REMARK 470 GLU L 183 CG CD OE1 OE2 REMARK 470 LYS L 186 CG CD CE NZ REMARK 470 SER L 187 OG REMARK 470 ARG L 189 CG CD NE CZ NH1 NH2 REMARK 470 SER L 190 OG REMARK 470 SER L 192 OG REMARK 470 THR L 209 OG1 CG2 REMARK 470 SER B 185 OG REMARK 470 SER B 186 OG REMARK 470 LEU B 188 CG CD1 CD2 REMARK 470 THR B 190 OG1 CG2 REMARK 470 GLU B 211 CG CD OE1 OE2 REMARK 470 LYS B 213 CG CD CE NZ REMARK 470 LYS C 110 CG CD CE NZ REMARK 470 SER C 122 OG REMARK 470 LYS C 149 CG CD CE NZ REMARK 470 SER C 152 OG REMARK 470 SER C 153 OG REMARK 470 VAL C 155 CG1 CG2 REMARK 470 LYS C 156 CG CD CE NZ REMARK 470 LYS C 186 CG CD CE NZ REMARK 470 SER C 187 OG REMARK 470 SER C 190 OG REMARK 470 THR C 209 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 471 O HOH B 534 1.84 REMARK 500 O ASN A 343 O HOH A 701 1.87 REMARK 500 O LEU C 180 O HOH C 401 1.90 REMARK 500 O HOH H 564 O HOH H 572 1.90 REMARK 500 O HOH H 435 O HOH H 548 1.91 REMARK 500 O HOH B 496 O HOH C 469 1.93 REMARK 500 NE2 GLN B 61 OE1 GLN C 1 1.95 REMARK 500 O HOH L 405 O HOH L 497 1.98 REMARK 500 O HOH Z 825 O HOH Z 834 1.98 REMARK 500 O HOH B 491 O HOH B 494 1.99 REMARK 500 O HOH B 538 O HOH B 551 1.99 REMARK 500 O HOH H 564 O HOH L 503 2.00 REMARK 500 NZ LYS H 209 O HOH H 401 2.00 REMARK 500 O HOH Z 800 O HOH Z 841 2.03 REMARK 500 O HOH Z 705 O HOH Z 822 2.05 REMARK 500 O HOH Z 815 O HOH Z 831 2.05 REMARK 500 O HOH B 500 O HOH B 553 2.06 REMARK 500 O HOH B 510 O HOH B 524 2.07 REMARK 500 O HOH C 443 O HOH C 470 2.09 REMARK 500 NE ARG B 66 O HOH B 401 2.09 REMARK 500 O HOH Z 756 O HOH H 557 2.10 REMARK 500 O HOH B 429 O HOH B 543 2.10 REMARK 500 O HOH A 753 O HOH A 786 2.10 REMARK 500 NE2 GLN L 79 O HOH L 401 2.11 REMARK 500 O HOH H 544 O HOH H 548 2.11 REMARK 500 O HOH L 490 O HOH L 507 2.13 REMARK 500 O GLN H 1 O HOH H 402 2.14 REMARK 500 O GLY L 77 O HOH L 401 2.15 REMARK 500 O HOH Z 735 O HOH Z 831 2.16 REMARK 500 O HOH B 546 O HOH B 548 2.18 REMARK 500 O HOH Z 818 O HOH Z 823 2.18 REMARK 500 O PRO B 41 O HOH B 402 2.18 REMARK 500 O HOH Z 848 O HOH B 558 2.18 REMARK 500 OD1 ASP A 420 O HOH A 702 2.18 REMARK 500 N ALA B 136 O HOH B 403 2.19 REMARK 500 O ASN Z 460 O HOH Z 701 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH H 565 O HOH B 538 2556 2.04 REMARK 500 O HIS L 188 NH2 ARG C 189 2456 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY Z 496 C - N - CA ANGL. DEV. = -12.7 DEGREES REMARK 500 LEU C 47 CA - CB - CG ANGL. DEV. = 16.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO Z 337 49.06 -85.00 REMARK 500 ASN L 27B -90.99 -115.04 REMARK 500 ASN L 51 -48.35 74.39 REMARK 500 ASN L 52 15.15 -146.64 REMARK 500 LEU L 95 -123.11 53.03 REMARK 500 ASP L 151 -119.94 57.05 REMARK 500 SER L 187 63.50 -113.62 REMARK 500 ASN A 343 -98.83 -72.44 REMARK 500 ALA A 344 117.03 61.58 REMARK 500 PHE A 377 88.58 -151.38 REMARK 500 ASN A 422 -53.15 -132.05 REMARK 500 GLN B 43 -169.74 -129.92 REMARK 500 ALA B 88 165.91 178.35 REMARK 500 PHE B 145 136.86 -171.68 REMARK 500 SER B 187 -26.29 -156.80 REMARK 500 LEU B 188 105.61 -58.79 REMARK 500 ASN C 27B -85.73 -115.20 REMARK 500 ASN C 51 -51.63 74.54 REMARK 500 ASN C 52 14.22 -142.63 REMARK 500 SER C 76 -73.81 -71.79 REMARK 500 LEU C 95 -136.39 68.19 REMARK 500 ALA C 127 4.24 -177.06 REMARK 500 ASP C 151 -76.79 64.62 REMARK 500 GLN C 167 -169.60 -102.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY Z 496 PHE Z 497 -141.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 114 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 560 DISTANCE = 6.32 ANGSTROMS DBREF 8SDF Z 333 530 UNP P0DTC2 SPIKE_SARS2 333 530 DBREF 8SDF H 1 215 PDB 8SDF 8SDF 1 215 DBREF 8SDF L 1 212 PDB 8SDF 8SDF 1 212 DBREF 8SDF A 333 530 UNP P0DTC2 SPIKE_SARS2 333 530 DBREF 8SDF B 1 215 PDB 8SDF 8SDF 1 215 DBREF 8SDF C 1 212 PDB 8SDF 8SDF 1 212 SEQADV 8SDF GLY Z 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF HIS Z 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF HIS Z 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF HIS Z 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF HIS Z 535 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF HIS Z 536 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF HIS Z 537 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF GLY A 531 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF HIS A 532 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF HIS A 533 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF HIS A 534 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF HIS A 535 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF HIS A 536 UNP P0DTC2 EXPRESSION TAG SEQADV 8SDF HIS A 537 UNP P0DTC2 EXPRESSION TAG SEQRES 1 Z 205 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 Z 205 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 Z 205 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 Z 205 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 Z 205 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 Z 205 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 Z 205 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 Z 205 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 Z 205 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 Z 205 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 Z 205 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 Z 205 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 Z 205 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 Z 205 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 Z 205 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 16 Z 205 LYS LYS SER GLY HIS HIS HIS HIS HIS HIS SEQRES 1 H 229 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 229 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 229 TYR THR PHE THR ASP TYR PHE LEU HIS TRP VAL ARG GLN SEQRES 4 H 229 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 H 229 PRO ASP SER GLY GLY THR ASN TYR ALA GLN ARG PHE GLN SEQRES 6 H 229 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 H 229 ALA TYR MET GLU VAL SER ARG LEU ARG SER ASP ASP THR SEQRES 8 H 229 ALA VAL TYR TYR CYS ALA ARG ASP ASN GLU ARG TYR GLN SEQRES 9 H 229 MET GLN ASN TYR TYR HIS TYR TYR GLY MET ASP VAL TRP SEQRES 10 H 229 GLY GLN GLY THR THR VAL THR VAL VAL SER ARG ARG LEU SEQRES 11 H 229 PRO PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 H 229 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 H 229 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 H 229 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 H 229 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 H 229 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 H 229 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 H 229 LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 L 217 GLN SER VAL LEU THR GLN PRO PRO SER ALA SER GLY THR SEQRES 2 L 217 PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 L 217 SER ASN ILE GLY SER ASN THR VAL ASN TRP TYR GLN GLN SEQRES 4 L 217 LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR SER ASN SEQRES 5 L 217 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 L 217 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 L 217 LEU GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA SEQRES 8 L 217 TRP ASP ASP SER LEU ASN GLY TYR VAL VAL PHE GLY GLY SEQRES 9 L 217 GLY THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA SEQRES 10 L 217 PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 L 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 L 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 L 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 L 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 L 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 L 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 L 217 LYS THR VAL ALA PRO THR GLU CYS SER SEQRES 1 A 205 THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA THR SEQRES 2 A 205 ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG ILE SEQRES 3 A 205 SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SER SEQRES 4 A 205 ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER PRO SEQRES 5 A 205 THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR ALA SEQRES 6 A 205 ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN ILE SEQRES 7 A 205 ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN TYR SEQRES 8 A 205 LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA TRP SEQRES 9 A 205 ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN TYR SEQRES 10 A 205 ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU LYS SEQRES 11 A 205 PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN ALA SEQRES 12 A 205 GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN CYS SEQRES 13 A 205 TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR ASN SEQRES 14 A 205 GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SER SEQRES 15 A 205 PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY PRO SEQRES 16 A 205 LYS LYS SER GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 229 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 B 229 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 B 229 TYR THR PHE THR ASP TYR PHE LEU HIS TRP VAL ARG GLN SEQRES 4 B 229 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY TRP ILE ASN SEQRES 5 B 229 PRO ASP SER GLY GLY THR ASN TYR ALA GLN ARG PHE GLN SEQRES 6 B 229 GLY ARG VAL THR MET THR ARG ASP THR SER ILE SER THR SEQRES 7 B 229 ALA TYR MET GLU VAL SER ARG LEU ARG SER ASP ASP THR SEQRES 8 B 229 ALA VAL TYR TYR CYS ALA ARG ASP ASN GLU ARG TYR GLN SEQRES 9 B 229 MET GLN ASN TYR TYR HIS TYR TYR GLY MET ASP VAL TRP SEQRES 10 B 229 GLY GLN GLY THR THR VAL THR VAL VAL SER ARG ARG LEU SEQRES 11 B 229 PRO PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SER SEQRES 12 B 229 THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL LYS SEQRES 13 B 229 ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER SEQRES 14 B 229 GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL SEQRES 15 B 229 LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL VAL SEQRES 16 B 229 THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR ILE SEQRES 17 B 229 CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP SEQRES 18 B 229 LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 C 217 GLN SER VAL LEU THR GLN PRO PRO SER ALA SER GLY THR SEQRES 2 C 217 PRO GLY GLN ARG VAL THR ILE SER CYS SER GLY SER SER SEQRES 3 C 217 SER ASN ILE GLY SER ASN THR VAL ASN TRP TYR GLN GLN SEQRES 4 C 217 LEU PRO GLY THR ALA PRO LYS LEU LEU ILE TYR SER ASN SEQRES 5 C 217 ASN GLN ARG PRO SER GLY VAL PRO ASP ARG PHE SER GLY SEQRES 6 C 217 SER LYS SER GLY THR SER ALA SER LEU ALA ILE SER GLY SEQRES 7 C 217 LEU GLN SER GLU ASP GLU ALA ASP TYR TYR CYS ALA ALA SEQRES 8 C 217 TRP ASP ASP SER LEU ASN GLY TYR VAL VAL PHE GLY GLY SEQRES 9 C 217 GLY THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA SEQRES 10 C 217 PRO SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU SEQRES 11 C 217 GLN ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP SEQRES 12 C 217 PHE TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SEQRES 13 C 217 SER SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SEQRES 14 C 217 SER LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR SEQRES 15 C 217 LEU SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER SEQRES 16 C 217 TYR SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU SEQRES 17 C 217 LYS THR VAL ALA PRO THR GLU CYS SER HET NAG D 1 14 HET NAG D 2 14 HET FUC D 3 10 HET MPD Z 601 8 HET MPD Z 602 8 HET MPD H 301 8 HET MPD L 301 8 HET MPD L 302 8 HET NAG A 601 14 HET MPD A 602 8 HET MPD B 301 8 HET MPD C 301 8 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 7 NAG 3(C8 H15 N O6) FORMUL 7 FUC C6 H12 O5 FORMUL 8 MPD 8(C6 H14 O2) FORMUL 17 HOH *780(H2 O) HELIX 1 AA1 PRO Z 337 ASN Z 343 1 7 HELIX 2 AA2 SER Z 349 TRP Z 353 5 5 HELIX 3 AA3 ASP Z 364 ASN Z 370 1 7 HELIX 4 AA4 LYS Z 386 ASP Z 389 5 4 HELIX 5 AA5 ASP Z 405 ILE Z 410 5 6 HELIX 6 AA6 GLY Z 416 ASN Z 422 1 7 HELIX 7 AA7 SER Z 438 SER Z 443 1 6 HELIX 8 AA8 GLY Z 502 TYR Z 505 5 4 HELIX 9 AA9 THR H 28 TYR H 32 5 5 HELIX 10 AB1 GLN H 61 GLN H 64 5 4 HELIX 11 AB2 THR H 73 ILE H 75 5 3 HELIX 12 AB3 ARG H 83 THR H 87 5 5 HELIX 13 AB4 MET H 100A TYR H 100E 5 5 HELIX 14 AB5 SER H 155 ALA H 157 5 3 HELIX 15 AB6 SER H 186 LEU H 188 5 3 HELIX 16 AB7 LYS H 200 ASN H 203 5 4 HELIX 17 AB8 GLN L 79 GLU L 83 5 5 HELIX 18 AB9 SER L 121 GLN L 126 1 6 HELIX 19 AC1 THR L 181 SER L 187 1 7 HELIX 20 AC2 PRO A 337 ASN A 343 1 7 HELIX 21 AC3 SER A 349 TRP A 353 5 5 HELIX 22 AC4 TYR A 365 ASN A 370 1 6 HELIX 23 AC5 SER A 383 ASP A 389 5 7 HELIX 24 AC6 ASP A 405 ILE A 410 5 6 HELIX 25 AC7 GLY A 416 ASN A 422 1 7 HELIX 26 AC8 SER A 438 SER A 443 1 6 HELIX 27 AC9 GLY A 502 TYR A 505 5 4 HELIX 28 AD1 THR B 28 TYR B 32 5 5 HELIX 29 AD2 THR B 73 ILE B 75 5 3 HELIX 30 AD3 ARG B 83 THR B 87 5 5 HELIX 31 AD4 MET B 100A TYR B 100E 5 5 HELIX 32 AD5 SER B 155 ALA B 157 5 3 HELIX 33 AD6 LYS B 200 ASN B 203 5 4 HELIX 34 AD7 GLN C 79 GLU C 83 5 5 HELIX 35 AD8 SER C 121 GLN C 126 1 6 HELIX 36 AD9 THR C 181 SER C 187 1 7 SHEET 1 AA1 5 ASN Z 354 ILE Z 358 0 SHEET 2 AA1 5 ASN Z 394 ARG Z 403 -1 O VAL Z 395 N ILE Z 358 SHEET 3 AA1 5 PRO Z 507 GLU Z 516 -1 O TYR Z 508 N ILE Z 402 SHEET 4 AA1 5 GLY Z 431 ASN Z 437 -1 N CYS Z 432 O LEU Z 513 SHEET 5 AA1 5 THR Z 376 TYR Z 380 -1 N TYR Z 380 O GLY Z 431 SHEET 1 AA2 3 CYS Z 361 VAL Z 362 0 SHEET 2 AA2 3 VAL Z 524 CYS Z 525 1 O CYS Z 525 N CYS Z 361 SHEET 3 AA2 3 CYS Z 391 PHE Z 392 -1 N PHE Z 392 O VAL Z 524 SHEET 1 AA3 2 LEU Z 452 ARG Z 454 0 SHEET 2 AA3 2 LEU Z 492 SER Z 494 -1 O GLN Z 493 N TYR Z 453 SHEET 1 AA4 2 TYR Z 473 GLN Z 474 0 SHEET 2 AA4 2 CYS Z 488 TYR Z 489 -1 O TYR Z 489 N TYR Z 473 SHEET 1 AA5 4 GLN H 3 GLN H 6 0 SHEET 2 AA5 4 VAL H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA5 4 THR H 77 VAL H 82 -1 O MET H 80 N VAL H 20 SHEET 4 AA5 4 VAL H 67 ASP H 72 -1 N ASP H 72 O THR H 77 SHEET 1 AA6 6 GLU H 10 LYS H 12 0 SHEET 2 AA6 6 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA6 6 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA6 6 LEU H 34 GLN H 39 -1 N VAL H 37 O TYR H 91 SHEET 5 AA6 6 LEU H 45 ILE H 51 -1 O MET H 48 N TRP H 36 SHEET 6 AA6 6 THR H 57 TYR H 59 -1 O ASN H 58 N TRP H 50 SHEET 1 AA7 4 GLU H 10 LYS H 12 0 SHEET 2 AA7 4 THR H 107 VAL H 111 1 O THR H 110 N LYS H 12 SHEET 3 AA7 4 ALA H 88 ASP H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AA7 4 MET H 100J TRP H 103 -1 O VAL H 102 N ARG H 94 SHEET 1 AA8 4 SER H 119 LEU H 123 0 SHEET 2 AA8 4 THR H 134 TYR H 144 -1 O LEU H 140 N PHE H 121 SHEET 3 AA8 4 TYR H 175 PRO H 184 -1 O TYR H 175 N TYR H 144 SHEET 4 AA8 4 VAL H 162 THR H 164 -1 N HIS H 163 O VAL H 180 SHEET 1 AA9 4 THR H 130 SER H 131 0 SHEET 2 AA9 4 THR H 134 TYR H 144 -1 O THR H 134 N SER H 131 SHEET 3 AA9 4 TYR H 175 PRO H 184 -1 O TYR H 175 N TYR H 144 SHEET 4 AA9 4 VAL H 168 LEU H 169 -1 N VAL H 168 O SER H 176 SHEET 1 AB1 3 THR H 150 TRP H 153 0 SHEET 2 AB1 3 ILE H 194 HIS H 199 -1 O ASN H 196 N SER H 152 SHEET 3 AB1 3 THR H 204 LYS H 209 -1 O VAL H 206 N VAL H 197 SHEET 1 AB2 5 SER L 9 GLY L 13 0 SHEET 2 AB2 5 THR L 102 VAL L 106 1 O LYS L 103 N ALA L 11 SHEET 3 AB2 5 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 AB2 5 VAL L 33 GLN L 38 -1 N TYR L 36 O TYR L 87 SHEET 5 AB2 5 LYS L 45 ILE L 48 -1 O LEU L 47 N TRP L 35 SHEET 1 AB3 4 SER L 9 GLY L 13 0 SHEET 2 AB3 4 THR L 102 VAL L 106 1 O LYS L 103 N ALA L 11 SHEET 3 AB3 4 ALA L 84 ASP L 92 -1 N ALA L 84 O LEU L 104 SHEET 4 AB3 4 TYR L 95C PHE L 98 -1 O TYR L 95C N ASP L 92 SHEET 1 AB4 3 ARG L 18 SER L 24 0 SHEET 2 AB4 3 SER L 70 SER L 76 -1 O ILE L 75 N VAL L 19 SHEET 3 AB4 3 PHE L 62 SER L 67 -1 N SER L 63 O ALA L 74 SHEET 1 AB5 4 SER L 114 PHE L 118 0 SHEET 2 AB5 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB5 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB5 4 VAL L 159 THR L 161 -1 N GLU L 160 O TYR L 177 SHEET 1 AB6 4 SER L 114 PHE L 118 0 SHEET 2 AB6 4 ALA L 130 PHE L 139 -1 O LEU L 135 N THR L 116 SHEET 3 AB6 4 TYR L 172 LEU L 180 -1 O SER L 176 N CYS L 134 SHEET 4 AB6 4 SER L 165 LYS L 166 -1 N SER L 165 O ALA L 173 SHEET 1 AB7 4 SER L 153 PRO L 154 0 SHEET 2 AB7 4 THR L 145 ALA L 150 -1 N ALA L 150 O SER L 153 SHEET 3 AB7 4 TYR L 191 HIS L 197 -1 O THR L 196 N THR L 145 SHEET 4 AB7 4 SER L 200 VAL L 206 -1 O VAL L 202 N VAL L 195 SHEET 1 AB8 5 ASN A 354 ILE A 358 0 SHEET 2 AB8 5 ASN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AB8 5 PRO A 507 GLU A 516 -1 O VAL A 512 N ASP A 398 SHEET 4 AB8 5 GLY A 431 ASN A 437 -1 N CYS A 432 O LEU A 513 SHEET 5 AB8 5 THR A 376 TYR A 380 -1 N LYS A 378 O VAL A 433 SHEET 1 AB9 3 CYS A 361 VAL A 362 0 SHEET 2 AB9 3 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 3 AB9 3 CYS A 391 PHE A 392 -1 N PHE A 392 O VAL A 524 SHEET 1 AC1 2 LEU A 452 ARG A 454 0 SHEET 2 AC1 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AC2 2 TYR A 473 GLN A 474 0 SHEET 2 AC2 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AC3 4 GLN B 3 GLN B 6 0 SHEET 2 AC3 4 VAL B 18 SER B 25 -1 O LYS B 23 N VAL B 5 SHEET 3 AC3 4 THR B 77 VAL B 82 -1 O MET B 80 N VAL B 20 SHEET 4 AC3 4 VAL B 67 ASP B 72 -1 N ASP B 72 O THR B 77 SHEET 1 AC4 6 GLU B 10 LYS B 12 0 SHEET 2 AC4 6 THR B 107 VAL B 111 1 O THR B 108 N GLU B 10 SHEET 3 AC4 6 ALA B 88 ASP B 95 -1 N TYR B 90 O THR B 107 SHEET 4 AC4 6 LEU B 34 GLN B 39 -1 N HIS B 35 O ALA B 93 SHEET 5 AC4 6 LEU B 45 ILE B 51 -1 O MET B 48 N TRP B 36 SHEET 6 AC4 6 THR B 57 TYR B 59 -1 O ASN B 58 N TRP B 50 SHEET 1 AC5 4 GLU B 10 LYS B 12 0 SHEET 2 AC5 4 THR B 107 VAL B 111 1 O THR B 108 N GLU B 10 SHEET 3 AC5 4 ALA B 88 ASP B 95 -1 N TYR B 90 O THR B 107 SHEET 4 AC5 4 MET B 100J TRP B 103 -1 O VAL B 102 N ARG B 94 SHEET 1 AC6 4 SER B 119 LEU B 123 0 SHEET 2 AC6 4 LEU B 137 TYR B 144 -1 O LYS B 142 N SER B 119 SHEET 3 AC6 4 TYR B 175 VAL B 181 -1 O LEU B 177 N VAL B 141 SHEET 4 AC6 4 VAL B 162 THR B 164 -1 N HIS B 163 O VAL B 180 SHEET 1 AC7 4 SER B 119 LEU B 123 0 SHEET 2 AC7 4 LEU B 137 TYR B 144 -1 O LYS B 142 N SER B 119 SHEET 3 AC7 4 TYR B 175 VAL B 181 -1 O LEU B 177 N VAL B 141 SHEET 4 AC7 4 VAL B 168 LEU B 169 -1 N VAL B 168 O SER B 176 SHEET 1 AC8 3 THR B 150 TRP B 153 0 SHEET 2 AC8 3 TYR B 193 HIS B 199 -1 O ASN B 198 N THR B 150 SHEET 3 AC8 3 THR B 204 VAL B 210 -1 O VAL B 206 N VAL B 197 SHEET 1 AC9 5 SER C 9 GLY C 13 0 SHEET 2 AC9 5 THR C 102 VAL C 106 1 O LYS C 103 N ALA C 11 SHEET 3 AC9 5 ALA C 84 ASP C 92 -1 N ALA C 84 O LEU C 104 SHEET 4 AC9 5 VAL C 33 GLN C 38 -1 N GLN C 38 O ASP C 85 SHEET 5 AC9 5 LYS C 45 ILE C 48 -1 O LEU C 47 N TRP C 35 SHEET 1 AD1 4 SER C 9 GLY C 13 0 SHEET 2 AD1 4 THR C 102 VAL C 106 1 O LYS C 103 N ALA C 11 SHEET 3 AD1 4 ALA C 84 ASP C 92 -1 N ALA C 84 O LEU C 104 SHEET 4 AD1 4 TYR C 95C PHE C 98 -1 O VAL C 97 N ALA C 90 SHEET 1 AD2 3 VAL C 19 SER C 24 0 SHEET 2 AD2 3 SER C 70 ILE C 75 -1 O ILE C 75 N VAL C 19 SHEET 3 AD2 3 PHE C 62 SER C 67 -1 N SER C 67 O SER C 70 SHEET 1 AD3 4 SER C 114 PHE C 118 0 SHEET 2 AD3 4 ALA C 130 PHE C 139 -1 O SER C 137 N SER C 114 SHEET 3 AD3 4 TYR C 172 LEU C 180 -1 O TYR C 172 N PHE C 139 SHEET 4 AD3 4 VAL C 159 THR C 161 -1 N GLU C 160 O TYR C 177 SHEET 1 AD4 4 SER C 114 PHE C 118 0 SHEET 2 AD4 4 ALA C 130 PHE C 139 -1 O SER C 137 N SER C 114 SHEET 3 AD4 4 TYR C 172 LEU C 180 -1 O TYR C 172 N PHE C 139 SHEET 4 AD4 4 SER C 165 LYS C 166 -1 N SER C 165 O ALA C 173 SHEET 1 AD5 4 SER C 153 PRO C 154 0 SHEET 2 AD5 4 THR C 145 ALA C 150 -1 N ALA C 150 O SER C 153 SHEET 3 AD5 4 TYR C 191 HIS C 197 -1 O THR C 196 N THR C 145 SHEET 4 AD5 4 SER C 200 VAL C 206 -1 O VAL C 206 N TYR C 191 SSBOND 1 CYS Z 336 CYS Z 361 1555 1555 2.05 SSBOND 2 CYS Z 379 CYS Z 432 1555 1555 2.09 SSBOND 3 CYS Z 391 CYS Z 525 1555 1555 2.06 SSBOND 4 CYS Z 480 CYS Z 488 1555 1555 2.09 SSBOND 5 CYS H 22 CYS H 92 1555 1555 2.05 SSBOND 6 CYS H 139 CYS H 195 1555 1555 2.05 SSBOND 7 CYS L 23 CYS L 88 1555 1555 2.05 SSBOND 8 CYS L 134 CYS L 193 1555 1555 2.05 SSBOND 9 CYS A 336 CYS A 361 1555 1555 2.06 SSBOND 10 CYS A 379 CYS A 432 1555 1555 2.09 SSBOND 11 CYS A 391 CYS A 525 1555 1555 2.05 SSBOND 12 CYS A 480 CYS A 488 1555 1555 2.06 SSBOND 13 CYS B 22 CYS B 92 1555 1555 2.04 SSBOND 14 CYS B 139 CYS B 195 1555 1555 2.04 SSBOND 15 CYS C 23 CYS C 88 1555 1555 2.06 SSBOND 16 CYS C 134 CYS C 193 1555 1555 2.04 LINK ND2 ASN Z 343 C1 NAG D 1 1555 1555 1.44 LINK O CYS Z 391 C5 MPD L 302 1555 1655 1.38 LINK ND2 ASN A 343 C1 NAG A 601 1555 1555 1.46 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.44 LINK O6 NAG D 1 C1 FUC D 3 1555 1555 1.43 CISPEP 1 PHE H 145 PRO H 146 0 -5.57 CISPEP 2 GLU H 147 PRO H 148 0 -0.34 CISPEP 3 TYR L 140 PRO L 141 0 3.36 CISPEP 4 PHE B 145 PRO B 146 0 -10.15 CISPEP 5 GLU B 147 PRO B 148 0 -3.53 CISPEP 6 TYR C 140 PRO C 141 0 3.10 CRYST1 58.204 142.996 82.928 90.00 94.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017181 0.000000 0.001240 0.00000 SCALE2 0.000000 0.006993 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012090 0.00000