HEADER IMMUNE SYSTEM 11-APR-23 8SFS TITLE HIGH AFFINITY NANOBODIES AGAINST GFP COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LAG16; COMPND 7 CHAIN: D, C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_TAXID: 6100; SOURCE 4 GENE: GFP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 9 ORGANISM_TAXID: 9844; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NANOBODY, NANOBODIES, GFP, GREEN FLUORESCENT PROTEIN, HIGH-AFFINITY KEYWDS 2 ANTIBODY VARIANT, ANTIBODY VARIANT, SINGLE-DOMAIN ANTIBODY, IMMUNE KEYWDS 3 SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR N.E.KETAREN,M.P.ROUT,J.B.BONNANO,S.C.ALMO REVDAT 1 22-MAY-24 8SFS 0 JRNL AUTH N.E.KETAREN,M.P.ROUT,S.ALMO JRNL TITL HIGH AFFINITY NANOBODIES AGAINST GFP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2-4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 62729 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.670 REMARK 3 FREE R VALUE TEST SET COUNT : 1678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.8000 - 5.4200 1.00 5347 153 0.1613 0.1738 REMARK 3 2 5.4200 - 4.3100 1.00 5161 142 0.1295 0.1648 REMARK 3 3 4.3100 - 3.7600 1.00 5132 141 0.1497 0.1704 REMARK 3 4 3.7600 - 3.4200 1.00 5120 140 0.1899 0.2187 REMARK 3 5 3.4200 - 3.1700 1.00 5095 140 0.2074 0.2617 REMARK 3 6 3.1700 - 2.9900 1.00 5084 135 0.2318 0.2705 REMARK 3 7 2.9900 - 2.8400 1.00 5102 144 0.2568 0.2984 REMARK 3 8 2.8400 - 2.7100 1.00 5061 141 0.2699 0.2755 REMARK 3 9 2.7100 - 2.6100 1.00 5039 136 0.2628 0.2789 REMARK 3 10 2.6100 - 2.5200 1.00 5057 136 0.2855 0.3360 REMARK 3 11 2.5200 - 2.4400 1.00 4996 136 0.3045 0.3271 REMARK 3 12 2.4400 - 2.3700 0.96 4857 134 0.3269 0.3490 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5795 REMARK 3 ANGLE : 0.968 7821 REMARK 3 CHIRALITY : 0.057 838 REMARK 3 PLANARITY : 0.009 1006 REMARK 3 DIHEDRAL : 10.420 800 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 69.8743 16.1461 -0.9756 REMARK 3 T TENSOR REMARK 3 T11: 0.5140 T22: 0.3851 REMARK 3 T33: 0.3718 T12: -0.0966 REMARK 3 T13: 0.0084 T23: -0.0282 REMARK 3 L TENSOR REMARK 3 L11: 0.1277 L22: 0.5198 REMARK 3 L33: 0.3583 L12: -0.1749 REMARK 3 L13: -0.0997 L23: -0.0436 REMARK 3 S TENSOR REMARK 3 S11: 0.0624 S12: -0.0390 S13: -0.0423 REMARK 3 S21: 0.1581 S22: -0.0102 S23: 0.0708 REMARK 3 S31: -0.0309 S32: 0.0389 S33: -0.0562 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SFS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000269194. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 143927 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.91900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1EMA, 4KRN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 71.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 1.26 M AMMONIUM REMARK 280 SULPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.19333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 102.38667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 102.38667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.19333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 131.77200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 51.19333 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -5.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 THR A 230 REMARK 465 HIS A 231 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 465 GLY A 239 REMARK 465 LEU A 240 REMARK 465 GLU A 241 REMARK 465 VAL A 242 REMARK 465 LEU A 243 REMARK 465 PHE A 244 REMARK 465 GLN A 245 REMARK 465 GLY A 246 REMARK 465 PRO A 247 REMARK 465 SER A 248 REMARK 465 HIS A 249 REMARK 465 HIS A 250 REMARK 465 HIS A 251 REMARK 465 HIS A 252 REMARK 465 HIS A 253 REMARK 465 HIS A 254 REMARK 465 MET B 0 REMARK 465 ALA B 1 REMARK 465 SER B 2 REMARK 465 HIS B 231 REMARK 465 GLY B 232 REMARK 465 MET B 233 REMARK 465 ASP B 234 REMARK 465 GLU B 235 REMARK 465 LEU B 236 REMARK 465 TYR B 237 REMARK 465 LYS B 238 REMARK 465 GLY B 239 REMARK 465 LEU B 240 REMARK 465 GLU B 241 REMARK 465 VAL B 242 REMARK 465 LEU B 243 REMARK 465 PHE B 244 REMARK 465 GLN B 245 REMARK 465 GLY B 246 REMARK 465 PRO B 247 REMARK 465 SER B 248 REMARK 465 HIS B 249 REMARK 465 HIS B 250 REMARK 465 HIS B 251 REMARK 465 HIS B 252 REMARK 465 HIS B 253 REMARK 465 HIS B 254 REMARK 465 GLY D 1 REMARK 465 LEU D 132 REMARK 465 GLU D 133 REMARK 465 VAL D 134 REMARK 465 LEU D 135 REMARK 465 PHE D 136 REMARK 465 GLN D 137 REMARK 465 GLY D 138 REMARK 465 PRO D 139 REMARK 465 SER D 140 REMARK 465 LEU D 141 REMARK 465 GLU D 142 REMARK 465 HIS D 143 REMARK 465 HIS D 144 REMARK 465 HIS D 145 REMARK 465 HIS D 146 REMARK 465 HIS D 147 REMARK 465 HIS D 148 REMARK 465 GLY C 1 REMARK 465 GLY C 131 REMARK 465 LEU C 132 REMARK 465 GLU C 133 REMARK 465 VAL C 134 REMARK 465 LEU C 135 REMARK 465 PHE C 136 REMARK 465 GLN C 137 REMARK 465 GLY C 138 REMARK 465 PRO C 139 REMARK 465 SER C 140 REMARK 465 LEU C 141 REMARK 465 GLU C 142 REMARK 465 HIS C 143 REMARK 465 HIS C 144 REMARK 465 HIS C 145 REMARK 465 HIS C 146 REMARK 465 HIS C 147 REMARK 465 HIS C 148 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG C 113 O HOH C 301 1.95 REMARK 500 NZ LYS D 69 O HOH D 301 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -158.90 -149.99 REMARK 500 PHE B 165 164.20 178.44 REMARK 500 ALA D 96 171.40 176.29 REMARK 500 ARG C 14 173.17 167.11 REMARK 500 ALA C 96 163.02 179.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 456 DISTANCE = 5.98 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C 209 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 423 O REMARK 620 2 GOL C 204 O1 124.4 REMARK 620 N 1 DBREF 8SFS A 0 238 UNP P42212 GFP_AEQVI 1 238 DBREF 8SFS B 0 238 UNP P42212 GFP_AEQVI 1 238 DBREF 8SFS D 1 148 PDB 8SFS 8SFS 1 148 DBREF 8SFS C 1 148 PDB 8SFS 8SFS 1 148 SEQADV 8SFS ALA A 1 UNP P42212 INSERTION SEQADV 8SFS CR2 A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 8SFS CR2 A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 8SFS CR2 A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 8SFS ALA A 72 UNP P42212 SER 72 CONFLICT SEQADV 8SFS GLY A 239 UNP P42212 EXPRESSION TAG SEQADV 8SFS LEU A 240 UNP P42212 EXPRESSION TAG SEQADV 8SFS GLU A 241 UNP P42212 EXPRESSION TAG SEQADV 8SFS VAL A 242 UNP P42212 EXPRESSION TAG SEQADV 8SFS LEU A 243 UNP P42212 EXPRESSION TAG SEQADV 8SFS PHE A 244 UNP P42212 EXPRESSION TAG SEQADV 8SFS GLN A 245 UNP P42212 EXPRESSION TAG SEQADV 8SFS GLY A 246 UNP P42212 EXPRESSION TAG SEQADV 8SFS PRO A 247 UNP P42212 EXPRESSION TAG SEQADV 8SFS SER A 248 UNP P42212 EXPRESSION TAG SEQADV 8SFS HIS A 249 UNP P42212 EXPRESSION TAG SEQADV 8SFS HIS A 250 UNP P42212 EXPRESSION TAG SEQADV 8SFS HIS A 251 UNP P42212 EXPRESSION TAG SEQADV 8SFS HIS A 252 UNP P42212 EXPRESSION TAG SEQADV 8SFS HIS A 253 UNP P42212 EXPRESSION TAG SEQADV 8SFS HIS A 254 UNP P42212 EXPRESSION TAG SEQADV 8SFS ALA B 1 UNP P42212 INSERTION SEQADV 8SFS CR2 B 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 8SFS CR2 B 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 8SFS CR2 B 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 8SFS ALA B 72 UNP P42212 SER 72 CONFLICT SEQADV 8SFS GLY B 239 UNP P42212 EXPRESSION TAG SEQADV 8SFS LEU B 240 UNP P42212 EXPRESSION TAG SEQADV 8SFS GLU B 241 UNP P42212 EXPRESSION TAG SEQADV 8SFS VAL B 242 UNP P42212 EXPRESSION TAG SEQADV 8SFS LEU B 243 UNP P42212 EXPRESSION TAG SEQADV 8SFS PHE B 244 UNP P42212 EXPRESSION TAG SEQADV 8SFS GLN B 245 UNP P42212 EXPRESSION TAG SEQADV 8SFS GLY B 246 UNP P42212 EXPRESSION TAG SEQADV 8SFS PRO B 247 UNP P42212 EXPRESSION TAG SEQADV 8SFS SER B 248 UNP P42212 EXPRESSION TAG SEQADV 8SFS HIS B 249 UNP P42212 EXPRESSION TAG SEQADV 8SFS HIS B 250 UNP P42212 EXPRESSION TAG SEQADV 8SFS HIS B 251 UNP P42212 EXPRESSION TAG SEQADV 8SFS HIS B 252 UNP P42212 EXPRESSION TAG SEQADV 8SFS HIS B 253 UNP P42212 EXPRESSION TAG SEQADV 8SFS HIS B 254 UNP P42212 EXPRESSION TAG SEQRES 1 A 253 MET ALA SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 A 253 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 A 253 LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 A 253 TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 A 253 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE SEQRES 6 A 253 CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS MET LYS SEQRES 7 A 253 GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 A 253 VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN SEQRES 9 A 253 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 A 253 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 A 253 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 A 253 TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN SEQRES 13 A 253 LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN SEQRES 14 A 253 ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 A 253 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 A 253 ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS SEQRES 17 A 253 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 A 253 PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU SEQRES 19 A 253 LEU TYR LYS GLY LEU GLU VAL LEU PHE GLN GLY PRO SER SEQRES 20 A 253 HIS HIS HIS HIS HIS HIS SEQRES 1 B 253 MET ALA SER LYS GLY GLU GLU LEU PHE THR GLY VAL VAL SEQRES 2 B 253 PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN GLY HIS SEQRES 3 B 253 LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP ALA THR SEQRES 4 B 253 TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR THR GLY SEQRES 5 B 253 LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR THR PHE SEQRES 6 B 253 CR2 VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS MET LYS SEQRES 7 B 253 GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU GLY TYR SEQRES 8 B 253 VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP GLY ASN SEQRES 9 B 253 TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY ASP THR SEQRES 10 B 253 LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP PHE LYS SEQRES 11 B 253 GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU TYR ASN SEQRES 12 B 253 TYR ASN SER HIS ASN VAL TYR ILE MET ALA ASP LYS GLN SEQRES 13 B 253 LYS ASN GLY ILE LYS VAL ASN PHE LYS ILE ARG HIS ASN SEQRES 14 B 253 ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS TYR GLN SEQRES 15 B 253 GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU LEU PRO SEQRES 16 B 253 ASP ASN HIS TYR LEU SER THR GLN SER ALA LEU SER LYS SEQRES 17 B 253 ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU LEU GLU SEQRES 18 B 253 PHE VAL THR ALA ALA GLY ILE THR HIS GLY MET ASP GLU SEQRES 19 B 253 LEU TYR LYS GLY LEU GLU VAL LEU PHE GLN GLY PRO SER SEQRES 20 B 253 HIS HIS HIS HIS HIS HIS SEQRES 1 D 148 GLY SER MET ALA GLN VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 D 148 ARG LEU VAL GLN ALA GLY ASP SER LEU ARG LEU SER CYS SEQRES 3 D 148 ALA ALA SER GLY ARG THR PHE SER THR SER ALA MET ALA SEQRES 4 D 148 TRP PHE ARG GLN ALA PRO GLY ARG GLU ARG GLU PHE VAL SEQRES 5 D 148 ALA ALA ILE THR TRP THR VAL GLY ASN THR ILE LEU GLY SEQRES 6 D 148 ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ARG SEQRES 7 D 148 ALA LYS ASN THR VAL ASP LEU GLN MET ASP ASN LEU GLU SEQRES 8 D 148 PRO GLU ASP THR ALA VAL TYR TYR CYS SER ALA ARG SER SEQRES 9 D 148 ARG GLY TYR VAL LEU SER VAL LEU ARG SER VAL ASP SER SEQRES 10 D 148 TYR ASP TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 11 D 148 GLY LEU GLU VAL LEU PHE GLN GLY PRO SER LEU GLU HIS SEQRES 12 D 148 HIS HIS HIS HIS HIS SEQRES 1 C 148 GLY SER MET ALA GLN VAL GLN LEU VAL GLU SER GLY GLY SEQRES 2 C 148 ARG LEU VAL GLN ALA GLY ASP SER LEU ARG LEU SER CYS SEQRES 3 C 148 ALA ALA SER GLY ARG THR PHE SER THR SER ALA MET ALA SEQRES 4 C 148 TRP PHE ARG GLN ALA PRO GLY ARG GLU ARG GLU PHE VAL SEQRES 5 C 148 ALA ALA ILE THR TRP THR VAL GLY ASN THR ILE LEU GLY SEQRES 6 C 148 ASP SER VAL LYS GLY ARG PHE THR ILE SER ARG ASP ARG SEQRES 7 C 148 ALA LYS ASN THR VAL ASP LEU GLN MET ASP ASN LEU GLU SEQRES 8 C 148 PRO GLU ASP THR ALA VAL TYR TYR CYS SER ALA ARG SER SEQRES 9 C 148 ARG GLY TYR VAL LEU SER VAL LEU ARG SER VAL ASP SER SEQRES 10 C 148 TYR ASP TYR TRP GLY GLN GLY THR GLN VAL THR VAL SER SEQRES 11 C 148 GLY LEU GLU VAL LEU PHE GLN GLY PRO SER LEU GLU HIS SEQRES 12 C 148 HIS HIS HIS HIS HIS MODRES 8SFS CR2 A 66 SER CHROMOPHORE MODRES 8SFS CR2 A 66 TYR CHROMOPHORE MODRES 8SFS CR2 A 66 GLY CHROMOPHORE MODRES 8SFS CR2 B 66 SER CHROMOPHORE MODRES 8SFS CR2 B 66 TYR CHROMOPHORE MODRES 8SFS CR2 B 66 GLY CHROMOPHORE HET CR2 A 66 19 HET CR2 B 66 19 HET NH4 A 301 5 HET NH4 A 302 5 HET NH4 A 303 5 HET NH4 A 304 5 HET NH4 A 305 5 HET GOL A 306 14 HET CL A 307 1 HET SO4 B 301 5 HET NH4 B 302 5 HET NH4 B 303 5 HET NH4 B 304 5 HET NH4 B 305 5 HET NH4 B 306 5 HET CL B 307 1 HET CL B 308 1 HET NA B 309 1 HET NA B 310 1 HET SO4 D 201 5 HET SO4 D 202 5 HET SO4 D 203 5 HET NH4 D 204 5 HET GOL D 205 14 HET GOL D 206 14 HET GOL D 207 14 HET GOL D 208 14 HET GOL D 209 14 HET SO4 C 201 5 HET SO4 C 202 5 HET SO4 C 203 5 HET GOL C 204 14 HET GOL C 205 14 HET GOL C 206 14 HET GOL C 207 14 HET CL C 208 1 HET NA C 209 1 HETNAM CR2 {(4Z)-2-(AMINOMETHYL)-4-[(4-HYDROXYPHENYL)METHYLIDENE]- HETNAM 2 CR2 5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1-YL}ACETIC ACID HETNAM NH4 AMMONIUM ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM NA SODIUM ION HETSYN CR2 CHROMOPHORE (GLY-TYR-GLY) HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CR2 2(C13 H13 N3 O4) FORMUL 5 NH4 11(H4 N 1+) FORMUL 10 GOL 10(C3 H8 O3) FORMUL 11 CL 4(CL 1-) FORMUL 12 SO4 7(O4 S 2-) FORMUL 20 NA 3(NA 1+) FORMUL 40 HOH *193(H2 O) HELIX 1 AA1 LYS A 3 THR A 9 5 7 HELIX 2 AA2 PRO A 56 VAL A 61 5 6 HELIX 3 AA3 VAL A 68 ALA A 72 5 5 HELIX 4 AA4 PRO A 75 HIS A 81 5 7 HELIX 5 AA5 ASP A 82 ALA A 87 1 6 HELIX 6 AA6 LYS A 156 ASN A 159 5 4 HELIX 7 AA7 GLY B 4 THR B 9 5 6 HELIX 8 AA8 PRO B 56 VAL B 61 5 6 HELIX 9 AA9 VAL B 68 ALA B 72 5 5 HELIX 10 AB1 PRO B 75 HIS B 81 5 7 HELIX 11 AB2 ASP B 82 ALA B 87 1 6 HELIX 12 AB3 THR D 32 THR D 35 5 4 HELIX 13 AB4 ASP D 66 LYS D 69 5 4 HELIX 14 AB5 GLU D 91 THR D 95 5 5 HELIX 15 AB6 VAL D 108 TYR D 118 5 11 HELIX 16 AB7 THR C 32 THR C 35 5 4 HELIX 17 AB8 ASP C 66 LYS C 69 5 4 HELIX 18 AB9 GLU C 91 THR C 95 5 5 HELIX 19 AC1 VAL C 108 TYR C 118 5 11 SHEET 1 AA112 VAL A 11 VAL A 22 0 SHEET 2 AA112 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 AA112 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 AA112 HIS A 217 ALA A 227 -1 O LEU A 220 N LEU A 44 SHEET 5 AA112 HIS A 199 SER A 208 -1 N SER A 202 O THR A 225 SHEET 6 AA112 HIS A 148 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 AA112 GLY A 160 ASN A 170 -1 O LYS A 162 N MET A 153 SHEET 8 AA112 VAL A 176 PRO A 187 -1 O GLN A 177 N HIS A 169 SHEET 9 AA112 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 AA112 ASN A 105 GLU A 115 -1 O TYR A 106 N ILE A 98 SHEET 11 AA112 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 AA112 VAL A 11 VAL A 22 1 N GLU A 17 O ILE A 123 SHEET 1 AA212 VAL B 11 VAL B 22 0 SHEET 2 AA212 HIS B 25 ASP B 36 -1 O HIS B 25 N VAL B 22 SHEET 3 AA212 LYS B 41 CYS B 48 -1 O ILE B 47 N SER B 30 SHEET 4 AA212 HIS B 217 ALA B 227 -1 O LEU B 220 N LEU B 44 SHEET 5 AA212 HIS B 199 SER B 208 -1 N SER B 202 O THR B 225 SHEET 6 AA212 HIS B 148 ASP B 155 -1 N HIS B 148 O THR B 203 SHEET 7 AA212 GLY B 160 ASN B 170 -1 O LYS B 162 N MET B 153 SHEET 8 AA212 VAL B 176 PRO B 187 -1 O GLN B 177 N HIS B 169 SHEET 9 AA212 TYR B 92 PHE B 100 -1 N PHE B 99 O ASP B 180 SHEET 10 AA212 ASN B 105 GLU B 115 -1 O TYR B 106 N ILE B 98 SHEET 11 AA212 THR B 118 ILE B 128 -1 O VAL B 120 N LYS B 113 SHEET 12 AA212 VAL B 11 VAL B 22 1 N ASP B 21 O GLY B 127 SHEET 1 AA3 4 VAL D 6 SER D 11 0 SHEET 2 AA3 4 LEU D 22 GLY D 30 -1 O SER D 29 N GLN D 7 SHEET 3 AA3 4 THR D 82 MET D 87 -1 O MET D 87 N LEU D 22 SHEET 4 AA3 4 PHE D 72 ASP D 77 -1 N THR D 73 O GLN D 86 SHEET 1 AA4 6 LEU D 15 GLN D 17 0 SHEET 2 AA4 6 THR D 125 SER D 130 1 O THR D 128 N VAL D 16 SHEET 3 AA4 6 ALA D 96 ARG D 103 -1 N TYR D 98 O THR D 125 SHEET 4 AA4 6 ALA D 37 GLN D 43 -1 N ALA D 37 O ARG D 103 SHEET 5 AA4 6 GLU D 50 THR D 56 -1 O GLU D 50 N ARG D 42 SHEET 6 AA4 6 THR D 62 LEU D 64 -1 O ILE D 63 N ALA D 54 SHEET 1 AA5 4 LEU D 15 GLN D 17 0 SHEET 2 AA5 4 THR D 125 SER D 130 1 O THR D 128 N VAL D 16 SHEET 3 AA5 4 ALA D 96 ARG D 103 -1 N TYR D 98 O THR D 125 SHEET 4 AA5 4 TYR D 120 TRP D 121 -1 O TYR D 120 N ALA D 102 SHEET 1 AA6 4 VAL C 6 SER C 11 0 SHEET 2 AA6 4 LEU C 22 GLY C 30 -1 O SER C 29 N GLN C 7 SHEET 3 AA6 4 THR C 82 MET C 87 -1 O MET C 87 N LEU C 22 SHEET 4 AA6 4 PHE C 72 ASP C 77 -1 N SER C 75 O ASP C 84 SHEET 1 AA7 6 ARG C 14 VAL C 16 0 SHEET 2 AA7 6 THR C 125 VAL C 129 1 O THR C 128 N VAL C 16 SHEET 3 AA7 6 ALA C 96 ARG C 103 -1 N TYR C 98 O THR C 125 SHEET 4 AA7 6 ALA C 37 GLN C 43 -1 N PHE C 41 O TYR C 99 SHEET 5 AA7 6 GLU C 50 THR C 56 -1 O GLU C 50 N ARG C 42 SHEET 6 AA7 6 THR C 62 LEU C 64 -1 O ILE C 63 N ALA C 54 SHEET 1 AA8 4 ARG C 14 VAL C 16 0 SHEET 2 AA8 4 THR C 125 VAL C 129 1 O THR C 128 N VAL C 16 SHEET 3 AA8 4 ALA C 96 ARG C 103 -1 N TYR C 98 O THR C 125 SHEET 4 AA8 4 TYR C 120 TRP C 121 -1 O TYR C 120 N ALA C 102 SSBOND 1 CYS D 26 CYS D 100 1555 1555 2.06 SSBOND 2 CYS C 26 CYS C 100 1555 1555 2.05 LINK C PHE A 64 N1 CR2 A 66 1555 1555 1.43 LINK C3 CR2 A 66 N VAL A 68 1555 1555 1.43 LINK O2 CR2 A 66 NH2 ARG A 96 1555 1555 1.32 LINK C PHE B 64 N1 CR2 B 66 1555 1555 1.43 LINK C3 CR2 B 66 N VAL B 68 1555 1555 1.43 LINK OD2 ASP B 19 NA NA B 309 1555 1555 3.13 LINK OE1 GLU B 124 NA NA B 310 1555 1555 2.73 LINK O HOH B 423 NA NA C 209 1555 1555 3.07 LINK O1 GOL C 204 NA NA C 209 1555 1555 3.04 CISPEP 1 MET A 88 PRO A 89 0 5.22 CISPEP 2 MET B 88 PRO B 89 0 3.49 CRYST1 131.772 131.772 153.580 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007589 0.004381 0.000000 0.00000 SCALE2 0.000000 0.008763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006511 0.00000