HEADER DNA BINDING PROTEIN/DNA 13-APR-23 8SH0 TITLE STRUCTURE OF HUMAN POT1 DNA BINDING DOMAIN BOUND TO A 5'- TITLE 2 PHOSPHORYLATED JUNCTION OF A TELOMERIC DNA HAIRPIN WITH A 3'-OVERHANG COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTECTION OF TELOMERES PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DNA BINDING DOMAIN; COMPND 5 SYNONYM: HPOT1,POT1-LIKE TELOMERE END-BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*CP*CP*AP*GP*CP*AP*GP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POT1; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HIGH FIVE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRAL VECTOR; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFBHTB-SMT3STAR-HPOT1-1-299; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS SHELTERIN, TELOMERE, DNA JUNCTION, 5'-PHOSPHORYLATED, POT-HOLE, KEYWDS 2 CHROMOSOME END PROTECTION, POT1, DBD, POT1-DNA COMPLEX, DNA BINDING KEYWDS 3 PROTEIN, DNA BINDING PROTEIN-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.NANDAKUMAR,V.M.TESMER REVDAT 1 30-AUG-23 8SH0 0 JRNL AUTH V.M.TESMER,K.A.BRENNER,J.NANDAKUMAR JRNL TITL HUMAN POT1 PROTECTS THE TELOMERIC DS-SS DNA JUNCTION BY JRNL TITL 2 CAPPING THE 5' END OF THE CHROMOSOME. JRNL REF SCIENCE V. 381 771 2023 JRNL REFN ESSN 1095-9203 JRNL PMID 37590346 JRNL DOI 10.1126/SCIENCE.ADI2436 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20846 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.480 REMARK 3 FREE R VALUE TEST SET COUNT : 1745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1900 - 4.9400 1.00 0 130 0.1562 0.1873 REMARK 3 2 4.9400 - 3.9200 1.00 0 130 0.1413 0.1738 REMARK 3 3 3.9200 - 3.4300 1.00 0 146 0.1652 0.2023 REMARK 3 4 3.4300 - 3.1100 1.00 0 100 0.1807 0.2266 REMARK 3 5 3.1100 - 2.8900 1.00 0 150 0.2207 0.2621 REMARK 3 6 2.8900 - 2.7200 1.00 0 206 0.2476 0.2970 REMARK 3 7 2.7200 - 2.5800 1.00 0 155 0.2032 0.2469 REMARK 3 8 2.5800 - 2.4700 1.00 0 146 0.2298 0.3147 REMARK 3 9 2.4700 - 2.3800 1.00 0 152 0.2527 0.2616 REMARK 3 10 2.3800 - 2.2900 1.00 0 128 0.2175 0.2607 REMARK 3 11 2.2900 - 2.2200 1.00 0 136 0.2293 0.2694 REMARK 3 12 2.2200 - 2.1600 1.00 0 166 0.2492 0.2898 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.192 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.272 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2874 REMARK 3 ANGLE : 0.646 3989 REMARK 3 CHIRALITY : 0.044 455 REMARK 3 PLANARITY : 0.004 430 REMARK 3 DIHEDRAL : 18.901 1065 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 6 THROUGH 143 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.3501 19.6847 18.3831 REMARK 3 T TENSOR REMARK 3 T11: 0.6019 T22: 0.2932 REMARK 3 T33: 0.3040 T12: -0.0356 REMARK 3 T13: 0.0162 T23: 0.0368 REMARK 3 L TENSOR REMARK 3 L11: 3.2750 L22: 3.5941 REMARK 3 L33: 3.2700 L12: -0.1734 REMARK 3 L13: -0.3729 L23: 0.7019 REMARK 3 S TENSOR REMARK 3 S11: 0.0509 S12: -0.3744 S13: 0.1958 REMARK 3 S21: 0.4901 S22: 0.0116 S23: 0.1384 REMARK 3 S31: -0.3417 S32: 0.1947 S33: -0.0690 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 144 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.3490 4.2672 6.7080 REMARK 3 T TENSOR REMARK 3 T11: 0.3963 T22: 0.3865 REMARK 3 T33: 0.4731 T12: 0.0100 REMARK 3 T13: -0.0225 T23: 0.0743 REMARK 3 L TENSOR REMARK 3 L11: 4.2850 L22: 4.1517 REMARK 3 L33: 4.6964 L12: 0.3369 REMARK 3 L13: -0.9054 L23: 0.6683 REMARK 3 S TENSOR REMARK 3 S11: -0.0777 S12: -0.4375 S13: -0.1478 REMARK 3 S21: 0.3347 S22: 0.1187 S23: -0.5793 REMARK 3 S31: 0.0195 S32: 0.5708 S33: -0.0317 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 232 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.9938 1.4500 -3.4817 REMARK 3 T TENSOR REMARK 3 T11: 0.3525 T22: 0.3373 REMARK 3 T33: 0.4666 T12: -0.0346 REMARK 3 T13: 0.0541 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 0.9243 L22: 3.3142 REMARK 3 L33: 3.9436 L12: -0.2689 REMARK 3 L13: -0.6354 L23: 0.6664 REMARK 3 S TENSOR REMARK 3 S11: -0.0990 S12: 0.5062 S13: -0.1984 REMARK 3 S21: -0.3473 S22: 0.0689 S23: -0.7890 REMARK 3 S31: 0.2020 S32: 0.3721 S33: -0.1192 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 233 THROUGH 258 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.4790 -3.0122 3.8370 REMARK 3 T TENSOR REMARK 3 T11: 0.7061 T22: 0.3896 REMARK 3 T33: 0.7942 T12: 0.0399 REMARK 3 T13: 0.1296 T23: 0.1325 REMARK 3 L TENSOR REMARK 3 L11: 0.6719 L22: 0.2809 REMARK 3 L33: 0.4235 L12: 0.4432 REMARK 3 L13: -0.1247 L23: -0.0642 REMARK 3 S TENSOR REMARK 3 S11: -0.1799 S12: 0.0726 S13: -0.4932 REMARK 3 S21: -0.5671 S22: 0.0006 S23: -1.0832 REMARK 3 S31: 0.6934 S32: 0.2135 S33: 0.1760 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 259 THROUGH 299 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6092 9.7906 5.1193 REMARK 3 T TENSOR REMARK 3 T11: 0.4258 T22: 0.3888 REMARK 3 T33: 0.4445 T12: -0.0456 REMARK 3 T13: -0.0589 T23: 0.0912 REMARK 3 L TENSOR REMARK 3 L11: 4.0886 L22: 2.1484 REMARK 3 L33: 2.2374 L12: 0.4296 REMARK 3 L13: -2.1172 L23: 0.1312 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.4359 S13: 0.0759 REMARK 3 S21: 0.2647 S22: 0.0309 S23: -0.3625 REMARK 3 S31: -0.0605 S32: 0.4076 S33: -0.0043 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -7 THROUGH 2 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.9644 25.5212 8.3419 REMARK 3 T TENSOR REMARK 3 T11: 0.9230 T22: 0.6777 REMARK 3 T33: 0.8707 T12: 0.1708 REMARK 3 T13: -0.0083 T23: -0.0097 REMARK 3 L TENSOR REMARK 3 L11: 6.4235 L22: 1.7564 REMARK 3 L33: 1.9489 L12: -2.9602 REMARK 3 L13: 0.6139 L23: 0.3444 REMARK 3 S TENSOR REMARK 3 S11: -0.1700 S12: 0.5557 S13: -0.7860 REMARK 3 S21: 0.5111 S22: -0.2284 S23: 0.9019 REMARK 3 S31: -0.4666 S32: -0.6902 S33: 0.3052 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 12 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.0245 -0.7337 13.4242 REMARK 3 T TENSOR REMARK 3 T11: 0.6875 T22: 0.4180 REMARK 3 T33: 0.5840 T12: 0.0370 REMARK 3 T13: 0.1828 T23: 0.1721 REMARK 3 L TENSOR REMARK 3 L11: 0.9777 L22: 0.9110 REMARK 3 L33: 3.6783 L12: 0.6223 REMARK 3 L13: -1.0175 L23: 0.3511 REMARK 3 S TENSOR REMARK 3 S11: -0.6515 S12: -0.2474 S13: -0.8332 REMARK 3 S21: 0.4559 S22: 0.0421 S23: 0.1465 REMARK 3 S31: 0.5990 S32: 0.5987 S33: 0.5019 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SH0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273755. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12723 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20897 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 71.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.30 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.13100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HDBD COMPLEX WITH 5PRIME-P-HP-SS1-12 REMARK 280 WAS CRYSTALLIZED AT 16C BY THE HANGING DROP METHOD IN A DROP REMARK 280 CONTAINING 0.8 MICROLITER OF 13 MG/ML PROTEIN-DNA COMPLEX (IN 25 REMARK 280 MM TRIS (PH 8), 100 MM NACL, AND 2 MM DTT) AND 0.8 MICROLITER REMARK 280 WELL SOLUTION (0.1 M NAOAC (PH 5.2) AND 10% PEG 20,000). REMARK 280 CRYSTALS WERE HARVESTED IN 25 MM TRIS (PH 8), 100 MM NACL, 0.1 M REMARK 280 NAOAC (PH 5.2), AND 10% PEG 20,000 AND CRYOPROTECTED IN REMARK 280 HARVESTING SOLUTION SUPPLEMENTED WITH 30% ETHYLENE GLYCOL, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 95.58200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.79100 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.79100 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.58200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 101 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 VAL A 4 REMARK 465 PRO A 5 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC B -7 P DC B -7 OP3 -0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 4 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 174 -86.75 -128.87 REMARK 500 LEU A 203 109.46 -58.58 REMARK 500 ASP A 224 -124.40 57.72 REMARK 500 REMARK 500 REMARK: NULL DBREF 8SH0 A 1 299 UNP Q9NUX5 POTE1_HUMAN 1 299 DBREF 8SH0 B -7 12 PDB 8SH0 8SH0 -7 12 SEQADV 8SH0 SER A 0 UNP Q9NUX5 EXPRESSION TAG SEQRES 1 A 300 SER MET SER LEU VAL PRO ALA THR ASN TYR ILE TYR THR SEQRES 2 A 300 PRO LEU ASN GLN LEU LYS GLY GLY THR ILE VAL ASN VAL SEQRES 3 A 300 TYR GLY VAL VAL LYS PHE PHE LYS PRO PRO TYR LEU SER SEQRES 4 A 300 LYS GLY THR ASP TYR CYS SER VAL VAL THR ILE VAL ASP SEQRES 5 A 300 GLN THR ASN VAL LYS LEU THR CYS LEU LEU PHE SER GLY SEQRES 6 A 300 ASN TYR GLU ALA LEU PRO ILE ILE TYR LYS ASN GLY ASP SEQRES 7 A 300 ILE VAL ARG PHE HIS ARG LEU LYS ILE GLN VAL TYR LYS SEQRES 8 A 300 LYS GLU THR GLN GLY ILE THR SER SER GLY PHE ALA SER SEQRES 9 A 300 LEU THR PHE GLU GLY THR LEU GLY ALA PRO ILE ILE PRO SEQRES 10 A 300 ARG THR SER SER LYS TYR PHE ASN PHE THR THR GLU ASP SEQRES 11 A 300 HIS LYS MET VAL GLU ALA LEU ARG VAL TRP ALA SER THR SEQRES 12 A 300 HIS MET SER PRO SER TRP THR LEU LEU LYS LEU CYS ASP SEQRES 13 A 300 VAL GLN PRO MET GLN TYR PHE ASP LEU THR CYS GLN LEU SEQRES 14 A 300 LEU GLY LYS ALA GLU VAL ASP GLY ALA SER PHE LEU LEU SEQRES 15 A 300 LYS VAL TRP ASP GLY THR ARG THR PRO PHE PRO SER TRP SEQRES 16 A 300 ARG VAL LEU ILE GLN ASP LEU VAL LEU GLU GLY ASP LEU SEQRES 17 A 300 SER HIS ILE HIS ARG LEU GLN ASN LEU THR ILE ASP ILE SEQRES 18 A 300 LEU VAL TYR ASP ASN HIS VAL HIS VAL ALA ARG SER LEU SEQRES 19 A 300 LYS VAL GLY SER PHE LEU ARG ILE TYR SER LEU HIS THR SEQRES 20 A 300 LYS LEU GLN SER MET ASN SER GLU ASN GLN THR MET LEU SEQRES 21 A 300 SER LEU GLU PHE HIS LEU HIS GLY GLY THR SER TYR GLY SEQRES 22 A 300 ARG GLY ILE ARG VAL LEU PRO GLU SER ASN SER ASP VAL SEQRES 23 A 300 ASP GLN LEU LYS LYS ASP LEU GLU SER ALA ASN LEU THR SEQRES 24 A 300 ALA SEQRES 1 B 20 DC DC DA DG DC DA DG DG DG DG DT DT DA SEQRES 2 B 20 DG DG DG DT DT DA DG HET ACT A 301 4 HET ACT A 302 4 HET ACT A 303 4 HETNAM ACT ACETATE ION FORMUL 3 ACT 3(C2 H3 O2 1-) FORMUL 6 HOH *120(H2 O) HELIX 1 AA1 ASN A 65 LEU A 69 5 5 HELIX 2 AA2 THR A 126 MET A 144 1 19 HELIX 3 AA3 LYS A 152 VAL A 156 5 5 HELIX 4 AA4 GLN A 199 LEU A 203 5 5 HELIX 5 AA5 ASP A 206 LEU A 213 1 8 HELIX 6 AA6 GLN A 214 THR A 217 5 4 HELIX 7 AA7 ASN A 225 LEU A 233 1 9 HELIX 8 AA8 THR A 269 ARG A 273 5 5 HELIX 9 AA9 ASN A 282 ALA A 299 1 18 SHEET 1 AA1 6 THR A 21 LEU A 37 0 SHEET 2 AA1 6 TYR A 43 VAL A 50 -1 O VAL A 46 N LYS A 33 SHEET 3 AA1 6 LYS A 56 SER A 63 -1 O LEU A 61 N SER A 45 SHEET 4 AA1 6 GLU A 92 PHE A 106 1 O GLY A 95 N LEU A 60 SHEET 5 AA1 6 ILE A 78 TYR A 89 -1 N HIS A 82 O ALA A 102 SHEET 6 AA1 6 THR A 21 LEU A 37 -1 N THR A 21 O ILE A 86 SHEET 1 AA2 7 GLY A 274 LEU A 278 0 SHEET 2 AA2 7 PHE A 238 SER A 250 -1 N PHE A 238 O LEU A 278 SHEET 3 AA2 7 LEU A 259 LEU A 265 -1 O GLU A 262 N LYS A 247 SHEET 4 AA2 7 ILE A 218 TYR A 223 1 N LEU A 221 O LEU A 265 SHEET 5 AA2 7 SER A 178 TRP A 184 -1 N VAL A 183 O ILE A 218 SHEET 6 AA2 7 GLN A 160 GLU A 173 -1 N LEU A 169 O LYS A 182 SHEET 7 AA2 7 PHE A 238 SER A 250 -1 O LEU A 239 N CYS A 166 CRYST1 67.230 67.230 143.373 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014874 0.008588 0.000000 0.00000 SCALE2 0.000000 0.017175 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006975 0.00000