HEADER TRANSFERASE/DNA 17-APR-23 8SJ2 TITLE STRUCTURE OF TERNARY COMPLEX OF CGAS WITH DSDNA AND BOUND ATP AND 2'- TITLE 2 DGTP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 147-507); COMPND 5 SYNONYM: CGAMP SYNTHASE,CGAS,M-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 COMPND 6 DOMAIN-CONTAINING PROTEIN 1; COMPND 7 EC: 2.7.7.86; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PALINDROMIC DNA18; COMPND 11 CHAIN: E, F, I, J; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CGAS, MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: NHMT MCAT WT; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 13 ORGANISM_TAXID: 32630 KEYWDS IMMUNE SYSTEM, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.WU,J.SOHN REVDAT 3 29-MAY-24 8SJ2 1 JRNL REVDAT 2 22-MAY-24 8SJ2 1 JRNL REVDAT 1 24-APR-24 8SJ2 0 JRNL AUTH S.WU,S.B.GABELLI,J.SOHN JRNL TITL THE STRUCTURAL BASIS FOR 2'-5'/3'-5'-CGAMP SYNTHESIS BY JRNL TITL 2 CGAS. JRNL REF NAT COMMUN V. 15 4012 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38740774 JRNL DOI 10.1038/S41467-024-48365-3 REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 54296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.680 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7200 - 5.3700 1.00 3998 154 0.1680 0.2009 REMARK 3 2 5.3700 - 4.2700 1.00 3822 145 0.1653 0.1901 REMARK 3 3 4.2700 - 3.7300 0.99 3765 144 0.1784 0.2342 REMARK 3 4 3.7300 - 3.3900 1.00 3775 145 0.1984 0.2356 REMARK 3 5 3.3900 - 3.1500 1.00 3742 142 0.2115 0.2359 REMARK 3 6 3.1500 - 2.9600 1.00 3772 144 0.2473 0.2959 REMARK 3 7 2.9600 - 2.8100 1.00 3714 142 0.2369 0.2449 REMARK 3 8 2.8100 - 2.6900 1.00 3744 143 0.2387 0.3052 REMARK 3 9 2.6900 - 2.5900 1.00 3742 143 0.2477 0.2974 REMARK 3 10 2.5900 - 2.5000 1.00 3744 144 0.2336 0.2537 REMARK 3 11 2.5000 - 2.4200 1.00 3691 141 0.2367 0.2721 REMARK 3 12 2.4200 - 2.3500 1.00 3726 142 0.2397 0.2692 REMARK 3 13 2.3500 - 2.2900 1.00 3709 142 0.2461 0.2811 REMARK 3 14 2.2900 - 2.2300 0.90 3353 128 0.2568 0.2840 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 NULL REMARK 3 ANGLE : 1.019 NULL REMARK 3 CHIRALITY : 0.054 1156 REMARK 3 PLANARITY : 0.010 1076 REMARK 3 DIHEDRAL : 23.941 1508 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESSEQ 146:506) OR (CHAIN H AND RESSEQ REMARK 3 2:2) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0684 27.2849 -20.0276 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: 0.3336 REMARK 3 T33: 0.3679 T12: -0.0193 REMARK 3 T13: -0.0021 T23: 0.0349 REMARK 3 L TENSOR REMARK 3 L11: 1.6407 L22: 2.5596 REMARK 3 L33: 1.2970 L12: 0.6291 REMARK 3 L13: -0.4284 L23: 0.0416 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: -0.0288 S13: 0.0729 REMARK 3 S21: -0.1177 S22: -0.0215 S23: -0.2560 REMARK 3 S31: -0.1088 S32: 0.0826 S33: 0.0109 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN C AND RESSEQ 149:506) OR (CHAIN H AND RESSEQ REMARK 3 1:1) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7426 -7.8928 -18.9896 REMARK 3 T TENSOR REMARK 3 T11: 0.3660 T22: 0.4074 REMARK 3 T33: 0.3640 T12: -0.0654 REMARK 3 T13: 0.0390 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 2.1532 L22: 2.9911 REMARK 3 L33: 1.0758 L12: 1.2914 REMARK 3 L13: 0.2133 L23: 0.2349 REMARK 3 S TENSOR REMARK 3 S11: -0.2264 S12: 0.2220 S13: -0.0913 REMARK 3 S21: -0.2871 S22: 0.1566 S23: 0.1845 REMARK 3 S31: 0.0873 S32: -0.1169 S33: 0.0735 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN E AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): -29.1954 23.4287 -31.7386 REMARK 3 T TENSOR REMARK 3 T11: 0.6405 T22: 0.6681 REMARK 3 T33: 0.5329 T12: 0.1769 REMARK 3 T13: 0.0561 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 2.7237 L22: 1.3997 REMARK 3 L33: 2.8350 L12: 0.4950 REMARK 3 L13: 0.9386 L23: -1.0792 REMARK 3 S TENSOR REMARK 3 S11: 0.2131 S12: 0.7122 S13: -0.0765 REMARK 3 S21: -0.5987 S22: 0.0506 S23: -0.0560 REMARK 3 S31: 0.0694 S32: -0.0821 S33: -0.2666 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN F AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9083 24.0043 -32.5677 REMARK 3 T TENSOR REMARK 3 T11: 0.7041 T22: 0.8161 REMARK 3 T33: 0.4992 T12: 0.0772 REMARK 3 T13: -0.0281 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.7520 L22: 2.5257 REMARK 3 L33: 1.5718 L12: 0.2929 REMARK 3 L13: 1.0070 L23: -0.2050 REMARK 3 S TENSOR REMARK 3 S11: 0.3418 S12: 0.5955 S13: -0.1887 REMARK 3 S21: -0.5770 S22: -0.2237 S23: -0.0395 REMARK 3 S31: 0.4186 S32: -0.4471 S33: -0.1293 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN I AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3428 -8.6778 -18.2535 REMARK 3 T TENSOR REMARK 3 T11: 0.5149 T22: 0.5901 REMARK 3 T33: 0.6782 T12: 0.1240 REMARK 3 T13: 0.0591 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 2.7318 L22: 2.7288 REMARK 3 L33: 1.7736 L12: 0.9088 REMARK 3 L13: -1.0063 L23: 0.7011 REMARK 3 S TENSOR REMARK 3 S11: 0.0631 S12: -0.2503 S13: -0.6428 REMARK 3 S21: 0.0965 S22: 0.0953 S23: -0.3138 REMARK 3 S31: 0.3610 S32: 0.6018 S33: -0.2391 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN J AND RESSEQ 1:18) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7586 -6.6595 -18.9697 REMARK 3 T TENSOR REMARK 3 T11: 0.6889 T22: 0.7074 REMARK 3 T33: 0.5716 T12: -0.0270 REMARK 3 T13: 0.1622 T23: -0.0985 REMARK 3 L TENSOR REMARK 3 L11: 3.4915 L22: 2.6988 REMARK 3 L33: 0.9579 L12: 0.0820 REMARK 3 L13: -0.0444 L23: 0.4620 REMARK 3 S TENSOR REMARK 3 S11: 0.1433 S12: -0.4586 S13: -0.4478 REMARK 3 S21: -0.0344 S22: 0.1640 S23: -0.3838 REMARK 3 S31: -0.1286 S32: 0.5864 S33: -0.1824 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273857. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-NOV-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9201 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS 20210205 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.7 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54457 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.230 REMARK 200 RESOLUTION RANGE LOW (A) : 29.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.70200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.7.03 REMARK 200 STARTING MODEL: PDB ENTRY 4LEZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 32% MPD, 0.1 M REMARK 280 BIS-TRIS, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.31700 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.38900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.42550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 71.38900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.31700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.42550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, E, F, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 144 REMARK 465 THR A 145 REMARK 465 LYS A 240 REMARK 465 ARG A 241 REMARK 465 ILE A 242 REMARK 465 PRO A 243 REMARK 465 ARG A 244 REMARK 465 GLY A 245 REMARK 465 LEU A 507 REMARK 465 GLY C 144 REMARK 465 THR C 145 REMARK 465 GLY C 146 REMARK 465 PRO C 147 REMARK 465 ASP C 148 REMARK 465 LYS C 240 REMARK 465 ARG C 241 REMARK 465 ILE C 242 REMARK 465 PRO C 243 REMARK 465 ARG C 244 REMARK 465 GLY C 245 REMARK 465 ASN C 246 REMARK 465 LEU C 252 REMARK 465 GLU C 253 REMARK 465 GLY C 254 REMARK 465 ASP C 354 REMARK 465 GLY C 355 REMARK 465 ASN C 356 REMARK 465 SER C 357 REMARK 465 PHE C 358 REMARK 465 LEU C 507 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC J 14 O3' DC J 14 C3' -0.043 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA E 7 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DT E 12 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DA E 15 O4' - C1' - N9 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC I 8 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 DC I 14 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC J 14 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 185 -113.72 14.76 REMARK 500 SER A 207 -54.62 71.62 REMARK 500 ARG A 222 73.19 -63.89 REMARK 500 GLU A 253 73.62 -118.87 REMARK 500 GLU A 255 -34.21 82.26 REMARK 500 PRO A 292 -117.07 -67.10 REMARK 500 ALA A 293 117.21 54.38 REMARK 500 ARG A 299 52.16 -107.09 REMARK 500 ASN A 300 96.07 -63.82 REMARK 500 PRO A 301 -72.70 9.31 REMARK 500 TRP A 331 -69.20 -126.36 REMARK 500 GLN A 359 -58.82 -28.87 REMARK 500 GLU A 414 -8.52 -55.08 REMARK 500 SER C 207 -58.43 74.73 REMARK 500 ARG C 222 79.13 48.11 REMARK 500 TYR C 229 97.25 -20.15 REMARK 500 LEU C 248 21.86 -75.41 REMARK 500 PRO C 301 -35.79 -30.17 REMARK 500 TRP C 331 -66.84 -125.67 REMARK 500 ASP C 434 77.61 -118.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 300 PRO A 301 -137.87 REMARK 500 ARG C 299 ASN C 300 128.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 211 OE1 REMARK 620 2 ASP A 213 OD2 90.5 REMARK 620 3 ATP A 601 O3G 94.1 173.7 REMARK 620 4 ATP A 601 O2B 165.1 83.8 90.7 REMARK 620 5 ATP A 601 O2A 109.1 86.1 96.4 84.2 REMARK 620 6 HOH A 707 O 77.6 81.5 95.2 87.9 166.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 112.2 REMARK 620 3 CYS A 385 SG 106.9 126.7 REMARK 620 4 CYS A 392 SG 98.9 100.6 107.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 603 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 211 OE1 REMARK 620 2 ASP C 213 OD2 92.4 REMARK 620 3 ATP C 601 O3G 90.8 171.1 REMARK 620 4 ATP C 601 O2B 166.1 82.3 92.7 REMARK 620 5 ATP C 601 O2A 103.6 86.7 100.6 89.0 REMARK 620 6 HOH C 720 O 81.3 80.7 91.6 85.1 166.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 604 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 378 NE2 REMARK 620 2 CYS C 384 SG 114.4 REMARK 620 3 CYS C 385 SG 103.9 129.7 REMARK 620 4 CYS C 392 SG 98.7 100.8 104.6 REMARK 620 N 1 2 3 DBREF 8SJ2 A 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8SJ2 C 147 507 UNP Q8C6L5 CGAS_MOUSE 147 507 DBREF 8SJ2 E 1 18 PDB 8SJ2 8SJ2 1 18 DBREF 8SJ2 F 1 18 PDB 8SJ2 8SJ2 1 18 DBREF 8SJ2 I 1 18 PDB 8SJ2 8SJ2 1 18 DBREF 8SJ2 J 1 18 PDB 8SJ2 8SJ2 1 18 SEQADV 8SJ2 GLY A 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8SJ2 THR A 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8SJ2 GLY A 146 UNP Q8C6L5 EXPRESSION TAG SEQADV 8SJ2 GLY C 144 UNP Q8C6L5 EXPRESSION TAG SEQADV 8SJ2 THR C 145 UNP Q8C6L5 EXPRESSION TAG SEQADV 8SJ2 GLY C 146 UNP Q8C6L5 EXPRESSION TAG SEQRES 1 A 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 A 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 A 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 A 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 A 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 A 364 PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 A 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 A 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 A 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 A 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 A 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 A 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 A 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 A 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 A 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 A 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 A 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 A 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 A 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 A 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 A 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 A 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 A 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 A 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 A 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 A 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 A 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 A 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 C 364 GLY THR GLY PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 2 C 364 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 3 C 364 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 4 C 364 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 5 C 364 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 6 C 364 PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO SEQRES 7 C 364 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 8 C 364 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 9 C 364 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 10 C 364 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 11 C 364 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 12 C 364 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 13 C 364 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 14 C 364 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 15 C 364 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 16 C 364 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 17 C 364 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 18 C 364 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 19 C 364 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 20 C 364 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 21 C 364 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 22 C 364 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 23 C 364 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 24 C 364 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 25 C 364 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 26 C 364 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 27 C 364 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 28 C 364 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 E 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 E 18 DC DA DG DA DT SEQRES 1 F 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 F 18 DC DA DG DA DT SEQRES 1 I 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 I 18 DC DA DG DA DT SEQRES 1 J 18 DA DT DC DT DG DT DA DC DA DT DG DT DA SEQRES 2 J 18 DC DA DG DA DT HET ATP A 601 31 HET DGT A 602 31 HET MG A 603 1 HET ZN A 604 1 HET ATP C 601 31 HET DGT C 602 31 HET MG C 603 1 HET ZN C 604 1 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM DGT 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 7 ATP 2(C10 H16 N5 O13 P3) FORMUL 8 DGT 2(C10 H16 N5 O13 P3) FORMUL 9 MG 2(MG 2+) FORMUL 10 ZN 2(ZN 2+) FORMUL 15 HOH *115(H2 O) HELIX 1 AA1 GLY A 146 ARG A 158 1 13 HELIX 2 AA2 LYS A 160 MET A 182 1 23 HELIX 3 AA3 LEU A 248 HIS A 250 5 3 HELIX 4 AA4 SER A 258 GLU A 276 1 19 HELIX 5 AA5 PRO A 319 LYS A 323 5 5 HELIX 6 AA6 GLY A 333 ARG A 342 1 10 HELIX 7 AA7 PHE A 358 GLY A 360 5 3 HELIX 8 AA8 PHE A 367 ASN A 377 1 11 HELIX 9 AA9 CYS A 393 PHE A 412 1 20 HELIX 10 AB1 GLN A 413 ASP A 416 5 4 HELIX 11 AB2 CYS A 419 ASP A 434 1 16 HELIX 12 AB3 GLN A 436 ARG A 443 5 8 HELIX 13 AB4 ASN A 444 GLU A 463 1 20 HELIX 14 AB5 ASP A 482 ASN A 499 1 18 HELIX 15 AB6 PHE A 501 LYS A 506 5 6 HELIX 16 AB7 LEU C 150 ARG C 158 1 9 HELIX 17 AB8 LYS C 160 ARG C 185 1 26 HELIX 18 AB9 GLY C 198 GLU C 202 1 5 HELIX 19 AC1 PRO C 247 PHE C 251 5 5 HELIX 20 AC2 SER C 258 ILE C 277 1 20 HELIX 21 AC3 PRO C 319 LYS C 323 5 5 HELIX 22 AC4 GLY C 333 ARG C 342 1 10 HELIX 23 AC5 PHE C 367 ASN C 377 1 11 HELIX 24 AC6 CYS C 393 PHE C 412 1 20 HELIX 25 AC7 GLN C 413 ASP C 416 5 4 HELIX 26 AC8 CYS C 419 ASP C 434 1 16 HELIX 27 AC9 GLN C 436 ARG C 443 5 8 HELIX 28 AD1 ASN C 444 GLU C 463 1 20 HELIX 29 AD2 ASP C 482 ASN C 499 1 18 HELIX 30 AD3 GLY C 500 LYS C 506 5 7 SHEET 1 AA1 7 GLU A 193 THR A 197 0 SHEET 2 AA1 7 GLU A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 AA1 7 GLU A 303 SER A 314 1 O GLU A 313 N LEU A 218 SHEET 4 AA1 7 PHE A 345 PRO A 349 -1 O LEU A 347 N LEU A 312 SHEET 5 AA1 7 THR A 362 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 AA1 7 PHE A 234 LYS A 238 -1 N TYR A 235 O TRP A 363 SHEET 7 AA1 7 GLU A 224 GLU A 227 -1 N GLN A 226 O LEU A 236 SHEET 1 AA2 5 GLU A 193 THR A 197 0 SHEET 2 AA2 5 GLU A 211 GLU A 219 -1 O MET A 215 N LEU A 195 SHEET 3 AA2 5 GLU A 303 SER A 314 1 O GLU A 313 N LEU A 218 SHEET 4 AA2 5 VAL A 294 ARG A 299 -1 N ILE A 298 O ILE A 304 SHEET 5 AA2 5 VAL A 282 VAL A 284 -1 N SER A 283 O LEU A 297 SHEET 1 AA3 2 LEU A 252 GLU A 253 0 SHEET 2 AA3 2 VAL A 256 LEU A 257 -1 O VAL A 256 N GLU A 253 SHEET 1 AA4 7 GLU C 193 THR C 197 0 SHEET 2 AA4 7 GLU C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA4 7 GLU C 303 SER C 314 1 O ILE C 309 N VAL C 214 SHEET 4 AA4 7 PHE C 345 VAL C 348 -1 O LEU C 347 N LEU C 312 SHEET 5 AA4 7 TRP C 363 SER C 366 -1 O ARG C 364 N VAL C 348 SHEET 6 AA4 7 PHE C 234 LYS C 238 -1 N TYR C 235 O TRP C 363 SHEET 7 AA4 7 GLU C 224 GLU C 227 -1 N GLN C 226 O LEU C 236 SHEET 1 AA5 5 GLU C 193 THR C 197 0 SHEET 2 AA5 5 GLU C 211 GLU C 219 -1 O MET C 215 N LEU C 195 SHEET 3 AA5 5 GLU C 303 SER C 314 1 O ILE C 309 N VAL C 214 SHEET 4 AA5 5 ALA C 293 ARG C 299 -1 N ILE C 298 O ILE C 304 SHEET 5 AA5 5 VAL C 282 VAL C 284 -1 N SER C 283 O LEU C 297 LINK OE1 GLU A 211 MG MG A 603 1555 1555 1.99 LINK OD2 ASP A 213 MG MG A 603 1555 1555 2.17 LINK NE2 HIS A 378 ZN ZN A 604 1555 1555 2.05 LINK SG CYS A 384 ZN ZN A 604 1555 1555 2.28 LINK SG CYS A 385 ZN ZN A 604 1555 1555 2.36 LINK SG CYS A 392 ZN ZN A 604 1555 1555 2.34 LINK O3G ATP A 601 MG MG A 603 1555 1555 1.97 LINK O2B ATP A 601 MG MG A 603 1555 1555 2.28 LINK O2A ATP A 601 MG MG A 603 1555 1555 2.09 LINK MG MG A 603 O HOH A 707 1555 1555 2.21 LINK OE1 GLU C 211 MG MG C 603 1555 1555 2.04 LINK OD2 ASP C 213 MG MG C 603 1555 1555 2.19 LINK NE2 HIS C 378 ZN ZN C 604 1555 1555 2.12 LINK SG CYS C 384 ZN ZN C 604 1555 1555 2.30 LINK SG CYS C 385 ZN ZN C 604 1555 1555 2.29 LINK SG CYS C 392 ZN ZN C 604 1555 1555 2.30 LINK O3G ATP C 601 MG MG C 603 1555 1555 2.10 LINK O2B ATP C 601 MG MG C 603 1555 1555 2.09 LINK O2A ATP C 601 MG MG C 603 1555 1555 1.99 LINK MG MG C 603 O HOH C 720 1555 1555 2.24 CRYST1 78.634 98.851 142.778 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012717 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010116 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007004 0.00000