HEADER DNA 18-APR-23 8SJP TITLE [3T15] SELF-ASSEMBLING DNA MOTIF WITH 15 BASE PAIRS BETWEEN JUNCTIONS TITLE 2 AND P32 SYMMETRY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*AP*GP*CP*TP*GP*AP*CP*CP*TP*GP*AP*CP*TP*CP*AP*CP*A)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(P*CP*GP*AP*TP*GP*GP*AP*CP*AP*GP*GP*GP*G)-3'); COMPND 8 CHAIN: B; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (5'-D(P*TP*GP*TP*GP*AP*GP*TP*CP*AP*CP*CP*AP*TP*CP*G)- COMPND 12 3'); COMPND 13 CHAIN: C; COMPND 14 ENGINEERED: YES; COMPND 15 MOL_ID: 4; COMPND 16 MOLECULE: DNA (5'-D(*TP*GP*CP*TP*CP*CP*TP*GP*TP*GP*GP*TP*CP*AP*GP*C)- COMPND 17 3'); COMPND 18 CHAIN: D; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630; SOURCE 9 MOL_ID: 3; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 4; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS TENSEGRITY TRIANGLE, DNA NANOTECHNOLOGY, NANOMATERIALS, DNA EXPDTA X-RAY DIFFRACTION AUTHOR S.VECCHIONI,J.JANOWSKI,R.SHA,Y.P.OHAYON REVDAT 2 08-MAY-24 8SJP 1 JRNL REVDAT 1 24-APR-24 8SJP 0 JRNL AUTH J.JANOWSKI,V.A.B.PHAM,S.VECCHIONI,K.WOLOSZYN,B.LU,Y.ZOU, JRNL AUTH 2 B.ERKALO,L.PERREN,J.RUEB,J.MADNICK,C.MAO,M.SAITO,Y.P.OHAYON, JRNL AUTH 3 N.JONOSKA,R.SHA JRNL TITL ENGINEERING TERTIARY CHIRALITY IN HELICAL BIOPOLYMERS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 121 92121 2024 JRNL REFN ESSN 1091-6490 JRNL PMID 38684000 JRNL DOI 10.1073/PNAS.2321992121 REMARK 2 REMARK 2 RESOLUTION. 5.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 5.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 59.4 REMARK 3 NUMBER OF REFLECTIONS : 1853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.096 REMARK 3 R VALUE (WORKING SET) : 0.093 REMARK 3 FREE R VALUE : 0.161 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.400 REMARK 3 FREE R VALUE TEST SET COUNT : 100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 50.3200 - 5.2200 0.59 1753 100 0.0930 0.1607 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.000 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.317 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 318.4 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 314.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.026 1416 REMARK 3 ANGLE : 1.984 2175 REMARK 3 CHIRALITY : 0.122 246 REMARK 3 PLANARITY : 0.011 62 REMARK 3 DIHEDRAL : 37.791 603 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN D AND RESID 1:16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.462 -19.859 -9.549 REMARK 3 T TENSOR REMARK 3 T11: 1.5755 T22: 3.7099 REMARK 3 T33: 4.2429 T12: 0.4933 REMARK 3 T13: -0.2919 T23: 0.0674 REMARK 3 L TENSOR REMARK 3 L11: 4.7368 L22: 7.5256 REMARK 3 L33: 3.2419 L12: 0.1895 REMARK 3 L13: 1.6598 L23: -4.2257 REMARK 3 S TENSOR REMARK 3 S11: 1.3362 S12: -2.6235 S13: -3.2990 REMARK 3 S21: -0.9944 S22: 1.1304 S23: 0.3360 REMARK 3 S31: 1.3148 S32: 3.2836 S33: -3.4736 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: ( CHAIN A AND RESID 1:12 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.327 -13.301 1.682 REMARK 3 T TENSOR REMARK 3 T11: 1.8812 T22: 2.8957 REMARK 3 T33: 3.7900 T12: 0.0071 REMARK 3 T13: -0.1106 T23: 0.8786 REMARK 3 L TENSOR REMARK 3 L11: 7.2028 L22: 3.8277 REMARK 3 L33: 3.9203 L12: 3.5746 REMARK 3 L13: -4.5754 L23: -0.8447 REMARK 3 S TENSOR REMARK 3 S11: 1.1895 S12: -1.0768 S13: 1.5264 REMARK 3 S21: 1.3986 S22: -2.9402 S23: -3.9914 REMARK 3 S31: -0.3654 S32: 3.6229 S33: 0.7272 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: ( CHAIN A AND RESID 13:18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.860 -12.861 0.371 REMARK 3 T TENSOR REMARK 3 T11: 3.6780 T22: 3.4372 REMARK 3 T33: 1.6659 T12: 0.2100 REMARK 3 T13: 1.2410 T23: 0.2531 REMARK 3 L TENSOR REMARK 3 L11: 5.4736 L22: 0.4148 REMARK 3 L33: 1.7977 L12: 1.5220 REMARK 3 L13: -3.1302 L23: -0.8714 REMARK 3 S TENSOR REMARK 3 S11: 0.4131 S12: -1.0978 S13: 0.7163 REMARK 3 S21: -1.1667 S22: 2.0620 S23: -1.4835 REMARK 3 S31: -0.5446 S32: 1.2896 S33: 2.8445 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: ( CHAIN B AND RESID 7:19 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.682 -14.575 -17.774 REMARK 3 T TENSOR REMARK 3 T11: 3.0527 T22: 3.5358 REMARK 3 T33: 2.4443 T12: 0.1556 REMARK 3 T13: -0.2394 T23: 0.3907 REMARK 3 L TENSOR REMARK 3 L11: 4.1785 L22: 2.0055 REMARK 3 L33: 1.9720 L12: -0.1508 REMARK 3 L13: 0.3403 L23: 0.9155 REMARK 3 S TENSOR REMARK 3 S11: -0.5300 S12: -0.1712 S13: -0.8973 REMARK 3 S21: 1.0439 S22: 2.7565 S23: 1.8102 REMARK 3 S31: -1.0326 S32: -0.0057 S33: -2.4826 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: ( CHAIN C AND RESID 1:15 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.452 -8.418 -6.503 REMARK 3 T TENSOR REMARK 3 T11: 1.7093 T22: 2.5492 REMARK 3 T33: 4.8710 T12: 0.6824 REMARK 3 T13: -0.3274 T23: 0.5148 REMARK 3 L TENSOR REMARK 3 L11: 1.3826 L22: 6.8088 REMARK 3 L33: 5.5769 L12: 1.2671 REMARK 3 L13: -0.5248 L23: 4.9318 REMARK 3 S TENSOR REMARK 3 S11: 1.9886 S12: -1.0268 S13: -2.5251 REMARK 3 S21: -2.0131 S22: -0.3203 S23: -3.1184 REMARK 3 S31: -0.4411 S32: -1.1365 S33: 2.2339 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SJP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000273889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00743 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AUTOPROC REMARK 200 DATA SCALING SOFTWARE : STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 1881 REMARK 200 RESOLUTION RANGE HIGH (A) : 5.218 REMARK 200 RESOLUTION RANGE LOW (A) : 55.815 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.2 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 5.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 5.99 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 9.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 6XNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 89.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 11.1 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM MOPS, 1.25 M MAGNESIUM SULFATE, REMARK 280 PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.45067 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.22533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 48.45067 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 24.22533 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N2 DG B 17 O2 DC D 5 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3' DA A 18 OP2 DC B 7 3555 1.31 REMARK 500 O3' DA A 18 P DC B 7 3555 1.63 REMARK 500 P DT C 1 O3' DG C 15 3555 1.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC A 1 O3' DC A 1 C3' 0.100 REMARK 500 DA A 2 N3 DA A 2 C4 -0.038 REMARK 500 DA A 2 N9 DA A 2 C4 -0.043 REMARK 500 DG A 3 P DG A 3 O5' 0.072 REMARK 500 DC A 4 P DC A 4 O5' 0.077 REMARK 500 DC A 4 C1' DC A 4 N1 0.097 REMARK 500 DC A 13 O3' DC A 13 C3' 0.090 REMARK 500 DC A 13 C1' DC A 13 N1 0.083 REMARK 500 DC A 15 O3' DC A 15 C3' -0.061 REMARK 500 DA A 16 C1' DA A 16 N9 -0.086 REMARK 500 DA A 16 N9 DA A 16 C4 -0.052 REMARK 500 DC A 17 C1' DC A 17 N1 -0.105 REMARK 500 DG B 8 C5' DG B 8 C4' 0.047 REMARK 500 DA B 9 C5' DA B 9 C4' 0.051 REMARK 500 DA B 9 O3' DA B 9 C3' 0.085 REMARK 500 DA B 13 O3' DA B 13 C3' -0.081 REMARK 500 DC B 14 C5' DC B 14 C4' 0.052 REMARK 500 DC B 14 O3' DC B 14 C3' 0.098 REMARK 500 DA B 15 N9 DA B 15 C4 -0.052 REMARK 500 DT C 1 O3' DT C 1 C3' 0.131 REMARK 500 DG C 2 O3' DG C 2 C3' 0.103 REMARK 500 DG C 4 O3' DG C 4 C3' 0.097 REMARK 500 DG C 6 C5' DG C 6 C4' 0.044 REMARK 500 DG C 6 N9 DG C 6 C4 -0.068 REMARK 500 DT C 7 N1 DT C 7 C2 0.049 REMARK 500 DC C 10 O3' DC C 10 C3' 0.108 REMARK 500 DC C 10 C1' DC C 10 N1 0.135 REMARK 500 DC C 11 C5' DC C 11 C4' 0.048 REMARK 500 DC C 11 O3' DC C 11 C3' 0.082 REMARK 500 DA C 12 N9 DA C 12 C4 -0.038 REMARK 500 DC C 14 O3' DC C 14 C3' -0.050 REMARK 500 DG C 15 C5' DG C 15 C4' 0.044 REMARK 500 DT D 4 O3' DT D 4 C3' 0.118 REMARK 500 DC D 5 O3' DC D 5 C3' 0.110 REMARK 500 DC D 6 C5' DC D 6 C4' 0.061 REMARK 500 DT D 7 P DT D 7 O5' 0.061 REMARK 500 DG D 11 C5' DG D 11 C4' 0.047 REMARK 500 DG D 11 O3' DG D 11 C3' 0.093 REMARK 500 DG D 11 C1' DG D 11 N9 -0.086 REMARK 500 DG D 11 N9 DG D 11 C4 -0.050 REMARK 500 DG D 15 O3' DG D 15 C3' 0.078 REMARK 500 DC D 16 C1' DC D 16 N1 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 1 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG A 3 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 DC A 4 O4' - C1' - N1 ANGL. DEV. = 4.4 DEGREES REMARK 500 DA A 7 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DC A 9 O5' - P - OP2 ANGL. DEV. = -9.1 DEGREES REMARK 500 DA A 12 C3' - O3' - P ANGL. DEV. = 35.3 DEGREES REMARK 500 DC A 13 O3' - P - O5' ANGL. DEV. = -43.2 DEGREES REMARK 500 DC A 13 O3' - P - OP2 ANGL. DEV. = 13.1 DEGREES REMARK 500 DC A 13 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC A 15 O5' - P - OP2 ANGL. DEV. = 7.8 DEGREES REMARK 500 DC B 7 O5' - P - OP1 ANGL. DEV. = -9.1 DEGREES REMARK 500 DC B 7 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 DG B 11 O4' - C1' - N9 ANGL. DEV. = 5.3 DEGREES REMARK 500 DG B 19 C3' - C2' - C1' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG C 4 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DT C 7 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DA C 9 O5' - P - OP1 ANGL. DEV. = 7.8 DEGREES REMARK 500 DA C 12 O4' - C1' - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 DT C 13 O4' - C1' - N1 ANGL. DEV. = 4.5 DEGREES REMARK 500 DC C 14 C3' - C2' - C1' ANGL. DEV. = -5.4 DEGREES REMARK 500 DC C 14 O4' - C1' - N1 ANGL. DEV. = 4.0 DEGREES REMARK 500 DG D 2 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DT D 4 O4' - C1' - N1 ANGL. DEV. = 4.6 DEGREES REMARK 500 DC D 5 C4' - C3' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG D 8 OP1 - P - OP2 ANGL. DEV. = -10.7 DEGREES REMARK 500 DA D 14 C3' - C2' - C1' ANGL. DEV. = -5.5 DEGREES REMARK 500 DA D 14 O4' - C1' - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 DG D 15 O4' - C1' - N9 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8D93 RELATED DB: PDB REMARK 900 TENSEGRITY TRIANGLE DBREF 8SJP A 1 18 PDB 8SJP 8SJP 1 18 DBREF 8SJP B 7 19 PDB 8SJP 8SJP 7 19 DBREF 8SJP C 1 15 PDB 8SJP 8SJP 1 15 DBREF 8SJP D 1 16 PDB 8SJP 8SJP 1 16 SEQRES 1 A 18 DC DA DG DC DT DG DA DC DC DT DG DA DC SEQRES 2 A 18 DT DC DA DC DA SEQRES 1 B 13 DC DG DA DT DG DG DA DC DA DG DG DG DG SEQRES 1 C 15 DT DG DT DG DA DG DT DC DA DC DC DA DT SEQRES 2 C 15 DC DG SEQRES 1 D 16 DT DG DC DT DC DC DT DG DT DG DG DT DC SEQRES 2 D 16 DA DG DC CRYST1 100.632 100.632 72.676 90.00 90.00 120.00 P 32 3 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009937 0.005737 0.000000 0.00000 SCALE2 0.000000 0.011474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013760 0.00000