HEADER VIRAL PROTEIN/IMMUNE SYSTEM 25-APR-23 8SM0 TITLE CRYSTAL STRUCTURE OF HUMAN COMPLEMENT RECEPTOR 2 (CD21) IN COMPLEX TITLE 2 WITH EPSTEIN-BARR VIRUS MAJOR GLYCOPROTEIN GP350 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT RECEPTOR TYPE 2; COMPND 3 CHAIN: C; COMPND 4 FRAGMENT: FIRST TWO AMINO-TERMINAL DOMAINS; COMPND 5 SYNONYM: CR2,COMPLEMENT C3D RECEPTOR,EPSTEIN-BARR VIRUS RECEPTOR,EBV COMPND 6 RECEPTOR; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: ENVELOPE GLYCOPROTEIN GP350; COMPND 10 CHAIN: G; COMPND 11 SYNONYM: MEMBRANE ANTIGEN,MA; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CR2, C3DR; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 10 ORGANISM_COMMON: EPSTEIN-BARR VIRUS; SOURCE 11 ORGANISM_TAXID: 10377; SOURCE 12 STRAIN: B95-8; SOURCE 13 GENE: BLLF1; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.-H.CHEN,W.BU,J.I.COHEN,M.KANEKIYO,M.G.JOYCE REVDAT 1 01-MAY-24 8SM0 0 JRNL AUTH W.-H.CHEN,W.BU,J.I.COHEN,M.KANEKIYO,G.M.JOYCE JRNL TITL STRUCTURAL BASIS FOR RECEPTOR ENGAGEMENT AND VIRUS JRNL TITL 2 NEUTRALIZATION THROUGH EPSTEIN-BARR VIRUS GP350 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.68 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 84.2 REMARK 3 NUMBER OF REFLECTIONS : 56365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 2796 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.6800 - 4.5657 0.89 2972 147 0.1857 0.2086 REMARK 3 2 4.5657 - 3.6258 0.99 3190 171 0.1641 0.1937 REMARK 3 3 3.6258 - 3.1680 0.99 3186 156 0.1949 0.2308 REMARK 3 4 3.1680 - 2.8786 0.99 3181 166 0.2240 0.2368 REMARK 3 5 2.8786 - 2.6724 0.99 3168 174 0.2306 0.2615 REMARK 3 6 2.6724 - 2.5149 0.99 3161 157 0.2341 0.2711 REMARK 3 7 2.5149 - 2.3890 0.99 3151 164 0.2421 0.2818 REMARK 3 8 2.3890 - 2.2851 0.99 3157 150 0.2375 0.2749 REMARK 3 9 2.2851 - 2.1971 0.97 3082 168 0.2383 0.2745 REMARK 3 10 2.1971 - 2.1213 0.97 3035 167 0.2376 0.2526 REMARK 3 11 2.1213 - 2.0550 0.96 3016 179 0.2556 0.2641 REMARK 3 12 2.0550 - 1.9963 0.94 3015 143 0.2444 0.2486 REMARK 3 13 1.9963 - 1.9437 0.92 2907 145 0.2528 0.2823 REMARK 3 14 1.9437 - 1.8963 0.89 2776 161 0.2588 0.3219 REMARK 3 15 1.8963 - 1.8532 0.83 2634 132 0.2840 0.3105 REMARK 3 16 1.8532 - 1.8138 0.74 2341 112 0.3188 0.3832 REMARK 3 17 1.8138 - 1.7775 0.66 2073 108 0.3252 0.3751 REMARK 3 18 1.7775 - 1.7440 0.52 1640 86 0.3195 0.2990 REMARK 3 19 1.7440 - 1.7128 0.38 1201 61 0.3370 0.3569 REMARK 3 20 1.7128 - 1.6840 0.22 683 49 0.3379 0.3694 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.7219 -1.4410 18.5975 REMARK 3 T TENSOR REMARK 3 T11: 0.1713 T22: 0.2538 REMARK 3 T33: 0.2902 T12: -0.0841 REMARK 3 T13: 0.0500 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 3.7834 L22: 6.9230 REMARK 3 L33: 5.0847 L12: -0.4820 REMARK 3 L13: 0.6519 L23: -1.2506 REMARK 3 S TENSOR REMARK 3 S11: -0.0859 S12: -0.4439 S13: -0.0290 REMARK 3 S21: 0.2155 S22: 0.0045 S23: 0.6119 REMARK 3 S31: 0.0664 S32: -0.5702 S33: 0.0635 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 32 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): -47.2658 -6.6564 13.1255 REMARK 3 T TENSOR REMARK 3 T11: 0.2619 T22: 0.1480 REMARK 3 T33: 0.2054 T12: -0.1112 REMARK 3 T13: 0.0030 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 5.6824 L22: 8.1668 REMARK 3 L33: 5.1421 L12: -3.1612 REMARK 3 L13: 1.4744 L23: -3.2627 REMARK 3 S TENSOR REMARK 3 S11: 0.0517 S12: 0.3117 S13: -0.1736 REMARK 3 S21: 0.1637 S22: -0.0141 S23: 0.1935 REMARK 3 S31: 0.3396 S32: -0.2735 S33: -0.2138 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 64 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.4284 -18.0413 11.9411 REMARK 3 T TENSOR REMARK 3 T11: 0.6727 T22: 0.3652 REMARK 3 T33: 0.4300 T12: 0.1903 REMARK 3 T13: -0.1230 T23: -0.1683 REMARK 3 L TENSOR REMARK 3 L11: 1.3869 L22: 0.3938 REMARK 3 L33: 1.7918 L12: 0.1017 REMARK 3 L13: 0.5454 L23: 0.4662 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: -0.3050 S13: -0.4661 REMARK 3 S21: 0.4587 S22: 0.5462 S23: -0.1620 REMARK 3 S31: 0.6063 S32: 0.5811 S33: -0.1708 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 84 THROUGH 92 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0675 -16.3771 15.9476 REMARK 3 T TENSOR REMARK 3 T11: 0.6028 T22: 0.5335 REMARK 3 T33: 0.6741 T12: 0.1081 REMARK 3 T13: -0.1789 T23: -0.0452 REMARK 3 L TENSOR REMARK 3 L11: 6.7963 L22: 2.3540 REMARK 3 L33: 5.5750 L12: 2.7328 REMARK 3 L13: -5.9384 L23: -2.5944 REMARK 3 S TENSOR REMARK 3 S11: 0.0287 S12: -0.9287 S13: -0.8631 REMARK 3 S21: 0.8317 S22: -0.1441 S23: -1.2846 REMARK 3 S31: 0.4819 S32: 1.5385 S33: 0.0461 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 93 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.7204 -11.8084 0.5975 REMARK 3 T TENSOR REMARK 3 T11: 0.3371 T22: 0.2139 REMARK 3 T33: 0.2852 T12: 0.0610 REMARK 3 T13: -0.0733 T23: -0.1632 REMARK 3 L TENSOR REMARK 3 L11: 4.1393 L22: 5.5016 REMARK 3 L33: 4.3983 L12: 0.9181 REMARK 3 L13: 0.8989 L23: 1.0398 REMARK 3 S TENSOR REMARK 3 S11: 0.2391 S12: 0.4002 S13: -0.0699 REMARK 3 S21: -0.2886 S22: -0.0000 S23: 0.0867 REMARK 3 S31: -0.5304 S32: -0.0873 S33: 0.4089 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 112 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.5486 -19.3744 5.9833 REMARK 3 T TENSOR REMARK 3 T11: 0.4944 T22: 0.2400 REMARK 3 T33: 0.4305 T12: 0.0457 REMARK 3 T13: -0.1140 T23: -0.0343 REMARK 3 L TENSOR REMARK 3 L11: 2.3519 L22: 3.7541 REMARK 3 L33: 3.4586 L12: -0.1966 REMARK 3 L13: -0.1239 L23: -3.1845 REMARK 3 S TENSOR REMARK 3 S11: 0.1196 S12: -0.2106 S13: -0.4411 REMARK 3 S21: -0.1157 S22: 0.3585 S23: -0.0558 REMARK 3 S31: 1.4914 S32: -0.2212 S33: -0.5817 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 7 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.4763 7.9162 13.1659 REMARK 3 T TENSOR REMARK 3 T11: 0.1993 T22: 0.3469 REMARK 3 T33: 0.2185 T12: -0.1101 REMARK 3 T13: 0.0149 T23: 0.0701 REMARK 3 L TENSOR REMARK 3 L11: 2.8303 L22: 0.6295 REMARK 3 L33: 1.1794 L12: 0.0427 REMARK 3 L13: 0.6875 L23: -0.1340 REMARK 3 S TENSOR REMARK 3 S11: -0.1721 S12: 0.8152 S13: 0.1450 REMARK 3 S21: -0.0751 S22: 0.0303 S23: -0.0396 REMARK 3 S31: 0.0073 S32: 0.2217 S33: 0.0470 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 188 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8296 -1.9744 31.5685 REMARK 3 T TENSOR REMARK 3 T11: 0.3919 T22: 0.1570 REMARK 3 T33: 0.2164 T12: -0.0719 REMARK 3 T13: -0.0587 T23: 0.0456 REMARK 3 L TENSOR REMARK 3 L11: 3.4265 L22: 2.9148 REMARK 3 L33: 2.6233 L12: -0.1968 REMARK 3 L13: -0.1890 L23: -1.0769 REMARK 3 S TENSOR REMARK 3 S11: 0.1338 S12: -0.3958 S13: -0.4832 REMARK 3 S21: 0.4030 S22: -0.1062 S23: -0.2911 REMARK 3 S31: 0.6309 S32: 0.0114 S33: 0.1513 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 306 THROUGH 425 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.0213 14.2584 24.4904 REMARK 3 T TENSOR REMARK 3 T11: 0.2040 T22: 0.5025 REMARK 3 T33: 0.3125 T12: -0.3106 REMARK 3 T13: 0.0010 T23: 0.3493 REMARK 3 L TENSOR REMARK 3 L11: 2.1053 L22: 1.0340 REMARK 3 L33: 1.3411 L12: 0.3158 REMARK 3 L13: 0.3009 L23: -0.2477 REMARK 3 S TENSOR REMARK 3 S11: -0.4131 S12: 0.7845 S13: 0.7281 REMARK 3 S21: 0.0737 S22: -0.3152 S23: -0.3019 REMARK 3 S31: -0.5190 S32: 0.6319 S33: -0.9299 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000274045. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 84.7 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.74400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2H6O, 1LY2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.60M AMMONIUM SULFATE, 2% PEG 400, REMARK 280 0.5% GLYCEROL, 0.1M SODIUM ACETATE PH5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 78.79200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.62750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 78.79200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.62750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET G 1 REMARK 465 GLU G 2 REMARK 465 ALA G 3 REMARK 465 ALA G 4 REMARK 465 LEU G 5 REMARK 465 LEU G 6 REMARK 465 GLN G 192 REMARK 465 ASP G 193 REMARK 465 PRO G 250 REMARK 465 VAL G 251 REMARK 465 ALA G 252 REMARK 465 THR G 253 REMARK 465 PRO G 254 REMARK 465 ILE G 255 REMARK 465 PRO G 256 REMARK 465 GLY G 257 REMARK 465 THR G 258 REMARK 465 ASN G 288 REMARK 465 GLY G 289 REMARK 465 PRO G 290 REMARK 465 LYS G 291 REMARK 465 ALA G 292 REMARK 465 SER G 293 REMARK 465 GLY G 294 REMARK 465 GLY G 295 REMARK 465 HIS G 426 REMARK 465 HIS G 427 REMARK 465 HIS G 428 REMARK 465 HIS G 429 REMARK 465 HIS G 430 REMARK 465 HIS G 431 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE C 1 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN G 169 O5 NAG G 510 1.14 REMARK 500 OE1 GLN G 9 H MET G 139 1.51 REMARK 500 H TYR G 262 O HOH G 602 1.57 REMARK 500 ND2 ASN C 101 H1 NAG C 601 1.59 REMARK 500 ND2 ASN G 229 H1 NAG G 504 1.59 REMARK 500 O7 NAG G 501 O HOH G 601 1.99 REMARK 500 O LEU G 185 O HOH G 602 2.01 REMARK 500 O HOH C 774 O HOH C 776 2.03 REMARK 500 OE2 GLU G 126 O HOH G 603 2.03 REMARK 500 O HOH G 723 O HOH G 735 2.06 REMARK 500 OD2 ASP G 307 O3 NAG G 505 2.06 REMARK 500 CG ASN G 169 O5 NAG G 510 2.08 REMARK 500 O HOH G 614 O HOH G 742 2.09 REMARK 500 OE1 GLU G 119 O HOH G 604 2.10 REMARK 500 OD1 ASN G 148 O HOH G 605 2.11 REMARK 500 OG1 THR G 189 OG SER G 194 2.11 REMARK 500 OH TYR G 159 O HOH G 606 2.13 REMARK 500 OG1 THR G 117 O HOH G 607 2.13 REMARK 500 O ASP G 340 O HOH G 608 2.13 REMARK 500 O GLY G 326 NZ LYS G 423 2.14 REMARK 500 O SER G 219 O HOH G 609 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL C 51 -54.73 -122.50 REMARK 500 THR G 19 -68.02 -107.48 REMARK 500 ASP G 215 4.35 85.13 REMARK 500 ASN G 342 62.40 -114.38 REMARK 500 ARG G 387 -0.55 77.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH G 760 DISTANCE = 6.40 ANGSTROMS DBREF 8SM0 C 1 129 UNP P20023 CR2_HUMAN 21 149 DBREF 8SM0 G 1 425 UNP P03200 GP350_EBVB9 1 425 SEQADV 8SM0 HIS G 426 UNP P03200 EXPRESSION TAG SEQADV 8SM0 HIS G 427 UNP P03200 EXPRESSION TAG SEQADV 8SM0 HIS G 428 UNP P03200 EXPRESSION TAG SEQADV 8SM0 HIS G 429 UNP P03200 EXPRESSION TAG SEQADV 8SM0 HIS G 430 UNP P03200 EXPRESSION TAG SEQADV 8SM0 HIS G 431 UNP P03200 EXPRESSION TAG SEQRES 1 C 129 ILE SER CYS GLY SER PRO PRO PRO ILE LEU ASN GLY ARG SEQRES 2 C 129 ILE SER TYR TYR SER THR PRO ILE ALA VAL GLY THR VAL SEQRES 3 C 129 ILE ARG TYR SER CYS SER GLY THR PHE ARG LEU ILE GLY SEQRES 4 C 129 GLU LYS SER LEU LEU CYS ILE THR LYS ASP LYS VAL ASP SEQRES 5 C 129 GLY THR TRP ASP LYS PRO ALA PRO LYS CYS GLU TYR PHE SEQRES 6 C 129 ASN LYS TYR SER SER CYS PRO GLU PRO ILE VAL PRO GLY SEQRES 7 C 129 GLY TYR LYS ILE ARG GLY SER THR PRO TYR ARG HIS GLY SEQRES 8 C 129 ASP SER VAL THR PHE ALA CYS LYS THR ASN PHE SER MET SEQRES 9 C 129 ASN GLY ASN LYS SER VAL TRP CYS GLN ALA ASN ASN MET SEQRES 10 C 129 TRP GLY PRO THR ARG LEU PRO THR CYS VAL SER VAL SEQRES 1 G 431 MET GLU ALA ALA LEU LEU VAL CYS GLN TYR THR ILE GLN SEQRES 2 G 431 SER LEU ILE HIS LEU THR GLY GLU ASP PRO GLY PHE PHE SEQRES 3 G 431 ASN VAL GLU ILE PRO GLU PHE PRO PHE TYR PRO THR CYS SEQRES 4 G 431 ASN VAL CYS THR ALA ASP VAL ASN VAL THR ILE ASN PHE SEQRES 5 G 431 ASP VAL GLY GLY LYS LYS HIS GLN LEU ASP LEU ASP PHE SEQRES 6 G 431 GLY GLN LEU THR PRO HIS THR LYS ALA VAL TYR GLN PRO SEQRES 7 G 431 ARG GLY ALA PHE GLY GLY SER GLU ASN ALA THR ASN LEU SEQRES 8 G 431 PHE LEU LEU GLU LEU LEU GLY ALA GLY GLU LEU ALA LEU SEQRES 9 G 431 THR MET ARG SER LYS LYS LEU PRO ILE ASN VAL THR THR SEQRES 10 G 431 GLY GLU GLU GLN GLN VAL SER LEU GLU SER VAL ASP VAL SEQRES 11 G 431 TYR PHE GLN ASP VAL PHE GLY THR MET TRP CYS HIS HIS SEQRES 12 G 431 ALA GLU MET GLN ASN PRO VAL TYR LEU ILE PRO GLU THR SEQRES 13 G 431 VAL PRO TYR ILE LYS TRP ASP ASN CYS ASN SER THR ASN SEQRES 14 G 431 ILE THR ALA VAL VAL ARG ALA GLN GLY LEU ASP VAL THR SEQRES 15 G 431 LEU PRO LEU SER LEU PRO THR SER ALA GLN ASP SER ASN SEQRES 16 G 431 PHE SER VAL LYS THR GLU MET LEU GLY ASN GLU ILE ASP SEQRES 17 G 431 ILE GLU CYS ILE MET GLU ASP GLY GLU ILE SER GLN VAL SEQRES 18 G 431 LEU PRO GLY ASP ASN LYS PHE ASN ILE THR CYS SER GLY SEQRES 19 G 431 TYR GLU SER HIS VAL PRO SER GLY GLY ILE LEU THR SER SEQRES 20 G 431 THR SER PRO VAL ALA THR PRO ILE PRO GLY THR GLY TYR SEQRES 21 G 431 ALA TYR SER LEU ARG LEU THR PRO ARG PRO VAL SER ARG SEQRES 22 G 431 PHE LEU GLY ASN ASN SER ILE LEU TYR VAL PHE TYR SER SEQRES 23 G 431 GLY ASN GLY PRO LYS ALA SER GLY GLY ASP TYR CYS ILE SEQRES 24 G 431 GLN SER ASN ILE VAL PHE SER ASP GLU ILE PRO ALA SER SEQRES 25 G 431 GLN ASP MET PRO THR ASN THR THR ASP ILE THR TYR VAL SEQRES 26 G 431 GLY ASP ASN ALA THR TYR SER VAL PRO MET VAL THR SER SEQRES 27 G 431 GLU ASP ALA ASN SER PRO ASN VAL THR VAL THR ALA PHE SEQRES 28 G 431 TRP ALA TRP PRO ASN ASN THR GLU THR ASP PHE LYS CYS SEQRES 29 G 431 LYS TRP THR LEU THR SER GLY THR PRO SER GLY CYS GLU SEQRES 30 G 431 ASN ILE SER GLY ALA PHE ALA SER ASN ARG THR PHE ASP SEQRES 31 G 431 ILE THR VAL SER GLY LEU GLY THR ALA PRO LYS THR LEU SEQRES 32 G 431 ILE ILE THR ARG THR ALA THR ASN ALA THR THR THR THR SEQRES 33 G 431 HIS LYS VAL ILE PHE SER LYS ALA PRO HIS HIS HIS HIS SEQRES 34 G 431 HIS HIS HET NAG C 601 28 HET NAG C 602 28 HET SO4 C 603 5 HET NAG G 501 28 HET NAG G 502 28 HET NAG G 503 28 HET NAG G 504 28 HET NAG G 505 28 HET NAG G 506 28 HET NAG G 507 28 HET NAG G 508 28 HET NAG G 509 28 HET NAG G 510 28 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 12(C8 H15 N O6) FORMUL 5 SO4 O4 S 2- FORMUL 16 HOH *237(H2 O) HELIX 1 AA1 ASN G 87 ASN G 90 5 4 HELIX 2 AA2 SER G 272 GLY G 276 5 5 SHEET 1 AA1 4 GLY C 12 ILE C 14 0 SHEET 2 AA1 4 VAL C 26 CYS C 31 -1 O SER C 30 N ARG C 13 SHEET 3 AA1 4 SER C 42 ILE C 46 -1 O LEU C 43 N ILE C 27 SHEET 4 AA1 4 THR C 54 TRP C 55 -1 O THR C 54 N ILE C 46 SHEET 1 AA2 2 ARG C 36 ILE C 38 0 SHEET 2 AA2 2 LYS C 61 GLU C 63 -1 O LYS C 61 N ILE C 38 SHEET 1 AA3 2 SER C 70 CYS C 71 0 SHEET 2 AA3 2 TYR C 88 ARG C 89 -1 O TYR C 88 N CYS C 71 SHEET 1 AA4 4 GLY C 79 ARG C 83 0 SHEET 2 AA4 4 SER C 93 CYS C 98 -1 O THR C 95 N ILE C 82 SHEET 3 AA4 4 SER C 109 CYS C 112 -1 O VAL C 110 N VAL C 94 SHEET 4 AA4 4 TRP C 118 GLY C 119 -1 O GLY C 119 N TRP C 111 SHEET 1 AA5 2 SER C 103 ASN C 105 0 SHEET 2 AA5 2 THR C 125 VAL C 127 -1 O VAL C 127 N SER C 103 SHEET 1 AA6 6 TYR G 10 ILE G 16 0 SHEET 2 AA6 6 MET G 139 TYR G 151 1 O HIS G 143 N ILE G 12 SHEET 3 AA6 6 VAL G 123 GLN G 133 -1 N PHE G 132 O TRP G 140 SHEET 4 AA6 6 ALA G 44 VAL G 54 -1 N ASP G 53 O SER G 124 SHEET 5 AA6 6 LYS G 57 LEU G 68 -1 O LEU G 63 N VAL G 48 SHEET 6 AA6 6 GLY G 80 PHE G 82 -1 O PHE G 82 N ASP G 62 SHEET 1 AA7 4 PHE G 25 ILE G 30 0 SHEET 2 AA7 4 GLU G 101 ARG G 107 -1 O LEU G 104 N VAL G 28 SHEET 3 AA7 4 PHE G 92 GLY G 98 -1 N LEU G 93 O THR G 105 SHEET 4 AA7 4 VAL G 75 TYR G 76 -1 N TYR G 76 O LEU G 94 SHEET 1 AA811 ASN G 166 SER G 167 0 SHEET 2 AA811 TYR G 297 PHE G 305 1 O CYS G 298 N ASN G 166 SHEET 3 AA811 SER G 279 SER G 286 -1 N LEU G 281 O SER G 301 SHEET 4 AA811 SER G 197 GLY G 204 -1 N GLU G 201 O TYR G 282 SHEET 5 AA811 ILE G 207 MET G 213 -1 O CYS G 211 N THR G 200 SHEET 6 AA811 GLY G 224 CYS G 232 -1 O THR G 231 N ILE G 212 SHEET 7 AA811 GLY G 242 SER G 247 -1 O GLY G 243 N PHE G 228 SHEET 8 AA811 TYR G 260 THR G 267 -1 O SER G 263 N THR G 246 SHEET 9 AA811 GLY G 178 LEU G 187 -1 N LEU G 183 O LEU G 264 SHEET 10 AA811 ALA G 172 ARG G 175 -1 N ARG G 175 O GLY G 178 SHEET 11 AA811 TYR G 297 PHE G 305 1 O ASN G 302 N ALA G 172 SHEET 1 AA9 5 ASN G 318 TYR G 324 0 SHEET 2 AA9 5 THR G 415 LYS G 423 1 O ILE G 420 N ILE G 322 SHEET 3 AA9 5 LYS G 401 ALA G 409 -1 N ILE G 405 O HIS G 417 SHEET 4 AA9 5 VAL G 346 TRP G 352 -1 N PHE G 351 O ILE G 404 SHEET 5 AA9 5 LYS G 365 THR G 367 -1 O TRP G 366 N VAL G 348 SHEET 1 AB1 3 ALA G 329 VAL G 333 0 SHEET 2 AB1 3 PHE G 389 VAL G 393 -1 O PHE G 389 N VAL G 333 SHEET 3 AB1 3 ILE G 379 PHE G 383 -1 N SER G 380 O THR G 392 SSBOND 1 CYS C 3 CYS C 45 1555 1555 2.03 SSBOND 2 CYS C 31 CYS C 62 1555 1555 2.04 SSBOND 3 CYS C 71 CYS C 112 1555 1555 2.03 SSBOND 4 CYS C 98 CYS C 126 1555 1555 2.03 SSBOND 5 CYS G 8 CYS G 141 1555 1555 2.03 SSBOND 6 CYS G 39 CYS G 42 1555 1555 2.03 SSBOND 7 CYS G 165 CYS G 298 1555 1555 2.04 SSBOND 8 CYS G 211 CYS G 232 1555 1555 2.04 SSBOND 9 CYS G 364 CYS G 376 1555 1555 2.04 LINK ND2 ASN C 101 C1 NAG C 601 1555 1555 1.40 LINK ND2 ASN C 107 C1 NAG C 602 1555 1555 1.42 LINK ND2 ASN G 47 C1 NAG G 501 1555 1555 1.40 LINK ND2 ASN G 114 C1 NAG G 502 1555 1555 1.39 LINK ND2 ASN G 166 C1 NAG G 503 1555 1555 1.41 LINK ND2 ASN G 169 C1 NAG G 510 1555 1555 1.40 LINK ND2 ASN G 229 C1 NAG G 504 1555 1555 1.39 LINK ND2 ASN G 277 C1 NAG G 505 1555 1555 1.39 LINK ND2 ASN G 318 C1 NAG G 506 1555 1555 1.42 LINK ND2 ASN G 328 C1 NAG G 507 1555 1555 1.40 LINK ND2 ASN G 345 C1 NAG G 508 1555 1555 1.42 LINK ND2 ASN G 386 C1 NAG G 509 1555 1555 1.41 CISPEP 1 THR C 19 PRO C 20 0 -5.11 CISPEP 2 THR C 86 PRO C 87 0 -1.47 CISPEP 3 GLY C 119 PRO C 120 0 1.41 CISPEP 4 ARG G 269 PRO G 270 0 -3.14 CRYST1 157.584 49.255 78.323 90.00 101.64 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006346 0.000000 0.001307 0.00000 SCALE2 0.000000 0.020303 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013036 0.00000