HEADER VIRAL PROTEIN/IMMUNE SYSTEM 25-APR-23 8SM1 TITLE CRYSTAL STRUCTURE OF HUMAN ANTIBODY 769A9 IN COMPLEX WITH EPSTEIN-BARR TITLE 2 VIRUS MAJOR GLYCOPROTEIN GP350 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP350; COMPND 3 CHAIN: G; COMPND 4 SYNONYM: MEMBRANE ANTIGEN,MA; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 769A9 FAB HEAVY CHAIN; COMPND 8 CHAIN: H; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: 769A9 FAB LIGHT CHAIN; COMPND 12 CHAIN: L; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN HERPESVIRUS 4; SOURCE 3 ORGANISM_COMMON: EPSTEIN-BARR VIRUS; SOURCE 4 ORGANISM_TAXID: 10377; SOURCE 5 STRAIN: B95-8; SOURCE 6 GENE: BLLF1; SOURCE 7 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 8 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 15 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 22 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS VIRAL PROTEIN, VIRAL PROTEIN-IMMUNE SYSTEM COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.-H.CHEN,W.BU,J.I.COHEN,M.KANEKIYO,M.G.JOYCE REVDAT 1 01-MAY-24 8SM1 0 JRNL AUTH W.-H.CHEN,W.BU,J.I.COHEN,M.KANEKIYO,G.M.JOYCE JRNL TITL STRUCTURAL BASIS FOR RECEPTOR ENGAGEMENT AND VIRUS JRNL TITL 2 NEUTRALIZATION THROUGH EPSTEIN-BARR VIRUS GP350 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 3.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.11.1_2575 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 82.9 REMARK 3 NUMBER OF REFLECTIONS : 14648 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.298 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7800 - 5.6139 0.99 3427 180 0.2486 0.2969 REMARK 3 2 5.6139 - 4.4572 0.98 3303 174 0.2300 0.2657 REMARK 3 3 4.4572 - 3.8941 0.94 3102 163 0.2591 0.2871 REMARK 3 4 3.8941 - 3.5382 0.75 2508 133 0.3055 0.3730 REMARK 3 5 3.5382 - 3.2900 0.48 1576 82 0.3301 0.3351 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6696 REMARK 3 ANGLE : 0.602 9135 REMARK 3 CHIRALITY : 0.044 1064 REMARK 3 PLANARITY : 0.004 1161 REMARK 3 DIHEDRAL : 12.541 3949 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 4 THROUGH 423 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1824 -84.2754 35.1943 REMARK 3 T TENSOR REMARK 3 T11: 0.2787 T22: 0.2865 REMARK 3 T33: 0.3539 T12: 0.0227 REMARK 3 T13: -0.0004 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.4446 L22: 1.3075 REMARK 3 L33: 4.2743 L12: -0.0949 REMARK 3 L13: 0.3793 L23: 0.5375 REMARK 3 S TENSOR REMARK 3 S11: 0.0882 S12: 0.2600 S13: 0.0576 REMARK 3 S21: 0.0464 S22: -0.0540 S23: -0.0653 REMARK 3 S31: -0.1813 S32: 0.1930 S33: -0.0502 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'H' AND (RESID 1 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.7245 -93.4760 -15.7755 REMARK 3 T TENSOR REMARK 3 T11: 0.6441 T22: 0.5282 REMARK 3 T33: 0.6481 T12: 0.0082 REMARK 3 T13: 0.1616 T23: 0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.1874 L22: 0.7451 REMARK 3 L33: 3.8389 L12: -1.0096 REMARK 3 L13: -0.5405 L23: 0.8933 REMARK 3 S TENSOR REMARK 3 S11: 0.2633 S12: 0.1458 S13: 0.1058 REMARK 3 S21: -0.4763 S22: -0.1027 S23: -0.4175 REMARK 3 S31: -1.0004 S32: -0.3875 S33: -0.1165 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'L' AND (RESID 1 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3249-111.2557 -18.4331 REMARK 3 T TENSOR REMARK 3 T11: 0.4930 T22: 0.4741 REMARK 3 T33: 0.6062 T12: 0.0552 REMARK 3 T13: -0.0148 T23: 0.0589 REMARK 3 L TENSOR REMARK 3 L11: 2.0721 L22: 1.2454 REMARK 3 L33: 3.8506 L12: -0.4167 REMARK 3 L13: -1.4164 L23: 1.4200 REMARK 3 S TENSOR REMARK 3 S11: -0.1960 S12: -0.0244 S13: -0.2614 REMARK 3 S21: 0.2449 S22: 0.1151 S23: 0.0282 REMARK 3 S31: 0.6235 S32: 0.2599 S33: 0.0549 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SM1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-23. REMARK 100 THE DEPOSITION ID IS D_1000274040. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16984 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.285 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 83.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.70300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2H6O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.60M AMMONIUM SULFATE, 2% PEG 400, REMARK 280 0.5% GLYCEROL, 0.1M SODIUM ACETATE PH5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 82.04100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.34150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 82.04100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.34150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 38540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 3.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET G 1 REMARK 465 GLU G 2 REMARK 465 ALA G 3 REMARK 465 ALA G 424 REMARK 465 PRO G 425 REMARK 465 HIS G 426 REMARK 465 HIS G 427 REMARK 465 HIS G 428 REMARK 465 HIS G 429 REMARK 465 HIS G 430 REMARK 465 HIS G 431 REMARK 465 SER H 128 REMARK 465 LYS H 129 REMARK 465 SER H 130 REMARK 465 THR H 131 REMARK 465 SER H 132 REMARK 465 GLY H 133 REMARK 465 GLY H 134 REMARK 465 LYS H 206 REMARK 465 VAL H 207 REMARK 465 ASP H 208 REMARK 465 LYS H 209 REMARK 465 LYS H 210 REMARK 465 VAL H 211 REMARK 465 GLU H 212 REMARK 465 PRO H 213 REMARK 465 LYS H 214 REMARK 465 SER H 215 REMARK 465 CYS H 216 REMARK 465 ASP H 217 REMARK 465 LYS H 218 REMARK 465 CYS L 214 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN G 166 O5 NAG G 501 1.62 REMARK 500 ND2 ASN G 277 O5 NAG G 504 1.93 REMARK 500 ND2 ASN G 386 O5 NAG G 506 2.06 REMARK 500 ND2 ASN G 356 C2 NAG G 507 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER G 85 -162.29 -75.45 REMARK 500 ASN G 87 73.16 -154.46 REMARK 500 THR G 116 -60.56 -95.54 REMARK 500 VAL G 157 72.79 53.17 REMARK 500 GLN G 177 -0.73 62.28 REMARK 500 VAL G 239 72.99 52.61 REMARK 500 THR G 248 56.87 -95.23 REMARK 500 PRO G 310 42.14 -84.11 REMARK 500 ALA G 311 -173.96 -173.58 REMARK 500 SER G 338 74.46 -100.39 REMARK 500 ALA G 384 -168.80 -78.85 REMARK 500 SER G 385 -169.85 -75.11 REMARK 500 THR G 398 19.93 53.01 REMARK 500 ASN G 411 30.86 -99.85 REMARK 500 PRO H 41 61.62 -68.80 REMARK 500 PRO H 52A 1.49 -69.10 REMARK 500 SER H 84 -62.00 -95.13 REMARK 500 ASP H 144 -4.16 72.97 REMARK 500 HIS H 200 -70.35 -115.86 REMARK 500 ALA L 51 -18.53 90.68 REMARK 500 ARG L 142 -11.91 72.10 REMARK 500 LYS L 169 -61.19 -94.88 REMARK 500 SER L 202 10.73 59.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG G 502 bound REMARK 800 to ASN G 47 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG G 501 bound REMARK 800 to ASN G 166 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG G 503 bound REMARK 800 to ASN G 229 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG G 504 bound REMARK 800 to ASN G 277 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG G 508 bound REMARK 800 to ASN G 345 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG G 507 bound REMARK 800 to ASN G 356 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG G 506 bound REMARK 800 to ASN G 386 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Mono-Saccharide NAG G 505 bound REMARK 800 to ASN G 411 DBREF 8SM1 G 1 425 UNP P03200 GP350_EBVB9 1 425 DBREF 8SM1 H 1 218 PDB 8SM1 8SM1 1 218 DBREF 8SM1 L 1 214 PDB 8SM1 8SM1 1 214 SEQADV 8SM1 HIS G 426 UNP P03200 EXPRESSION TAG SEQADV 8SM1 HIS G 427 UNP P03200 EXPRESSION TAG SEQADV 8SM1 HIS G 428 UNP P03200 EXPRESSION TAG SEQADV 8SM1 HIS G 429 UNP P03200 EXPRESSION TAG SEQADV 8SM1 HIS G 430 UNP P03200 EXPRESSION TAG SEQADV 8SM1 HIS G 431 UNP P03200 EXPRESSION TAG SEQRES 1 G 431 MET GLU ALA ALA LEU LEU VAL CYS GLN TYR THR ILE GLN SEQRES 2 G 431 SER LEU ILE HIS LEU THR GLY GLU ASP PRO GLY PHE PHE SEQRES 3 G 431 ASN VAL GLU ILE PRO GLU PHE PRO PHE TYR PRO THR CYS SEQRES 4 G 431 ASN VAL CYS THR ALA ASP VAL ASN VAL THR ILE ASN PHE SEQRES 5 G 431 ASP VAL GLY GLY LYS LYS HIS GLN LEU ASP LEU ASP PHE SEQRES 6 G 431 GLY GLN LEU THR PRO HIS THR LYS ALA VAL TYR GLN PRO SEQRES 7 G 431 ARG GLY ALA PHE GLY GLY SER GLU ASN ALA THR ASN LEU SEQRES 8 G 431 PHE LEU LEU GLU LEU LEU GLY ALA GLY GLU LEU ALA LEU SEQRES 9 G 431 THR MET ARG SER LYS LYS LEU PRO ILE ASN VAL THR THR SEQRES 10 G 431 GLY GLU GLU GLN GLN VAL SER LEU GLU SER VAL ASP VAL SEQRES 11 G 431 TYR PHE GLN ASP VAL PHE GLY THR MET TRP CYS HIS HIS SEQRES 12 G 431 ALA GLU MET GLN ASN PRO VAL TYR LEU ILE PRO GLU THR SEQRES 13 G 431 VAL PRO TYR ILE LYS TRP ASP ASN CYS ASN SER THR ASN SEQRES 14 G 431 ILE THR ALA VAL VAL ARG ALA GLN GLY LEU ASP VAL THR SEQRES 15 G 431 LEU PRO LEU SER LEU PRO THR SER ALA GLN ASP SER ASN SEQRES 16 G 431 PHE SER VAL LYS THR GLU MET LEU GLY ASN GLU ILE ASP SEQRES 17 G 431 ILE GLU CYS ILE MET GLU ASP GLY GLU ILE SER GLN VAL SEQRES 18 G 431 LEU PRO GLY ASP ASN LYS PHE ASN ILE THR CYS SER GLY SEQRES 19 G 431 TYR GLU SER HIS VAL PRO SER GLY GLY ILE LEU THR SER SEQRES 20 G 431 THR SER PRO VAL ALA THR PRO ILE PRO GLY THR GLY TYR SEQRES 21 G 431 ALA TYR SER LEU ARG LEU THR PRO ARG PRO VAL SER ARG SEQRES 22 G 431 PHE LEU GLY ASN ASN SER ILE LEU TYR VAL PHE TYR SER SEQRES 23 G 431 GLY ASN GLY PRO LYS ALA SER GLY GLY ASP TYR CYS ILE SEQRES 24 G 431 GLN SER ASN ILE VAL PHE SER ASP GLU ILE PRO ALA SER SEQRES 25 G 431 GLN ASP MET PRO THR ASN THR THR ASP ILE THR TYR VAL SEQRES 26 G 431 GLY ASP ASN ALA THR TYR SER VAL PRO MET VAL THR SER SEQRES 27 G 431 GLU ASP ALA ASN SER PRO ASN VAL THR VAL THR ALA PHE SEQRES 28 G 431 TRP ALA TRP PRO ASN ASN THR GLU THR ASP PHE LYS CYS SEQRES 29 G 431 LYS TRP THR LEU THR SER GLY THR PRO SER GLY CYS GLU SEQRES 30 G 431 ASN ILE SER GLY ALA PHE ALA SER ASN ARG THR PHE ASP SEQRES 31 G 431 ILE THR VAL SER GLY LEU GLY THR ALA PRO LYS THR LEU SEQRES 32 G 431 ILE ILE THR ARG THR ALA THR ASN ALA THR THR THR THR SEQRES 33 G 431 HIS LYS VAL ILE PHE SER LYS ALA PRO HIS HIS HIS HIS SEQRES 34 G 431 HIS HIS SEQRES 1 H 228 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU LEU LYS THR SEQRES 2 H 228 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 228 TYR THR PHE THR GLY TYR TYR ILE HIS TRP VAL ARG GLN SEQRES 4 H 228 ALA PRO GLY GLU GLY LEU GLU TRP THR GLY TRP ILE ASN SEQRES 5 H 228 PRO ASN SER GLY ALA THR ARG TYR GLY GLN LYS PHE GLN SEQRES 6 H 228 GLY ARG VAL THR LEU THR SER ASP THR SER SER SER THR SEQRES 7 H 228 VAL TYR MET GLU VAL SER ASN LEU THR SER ASP ASP SER SEQRES 8 H 228 ALA VAL TYR TYR CYS ALA ARG GLU LEU SER TYR SER ILE SEQRES 9 H 228 ARG GLY THR GLY PRO LEU GLY TYR TRP GLY LEU GLY THR SEQRES 10 H 228 LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 228 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 228 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 228 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 228 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 228 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 228 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 228 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS LYS VAL SEQRES 18 H 228 GLU PRO LYS SER CYS ASP LYS SEQRES 1 L 215 GLU ILE VAL LEU THR GLN SER PRO GLY THR LEU SER LEU SEQRES 2 L 215 SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG ALA SER SEQRES 3 L 215 GLN SER VAL ALA SER LYS TYR LEU ALA TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR GLY ALA SEQRES 5 L 215 SER SER ARG ALA THR GLY ILE PRO ASP ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR ASP PHE THR LEU THR ILE SER ARG SEQRES 7 L 215 LEU GLU PRO GLU ASP PHE ALA VAL TYR TYR CYS GLN TYR SEQRES 8 L 215 TYR GLY SER SER PRO LEU THR PHE GLY GLN GLY THR LYS SEQRES 9 L 215 VAL GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE SEQRES 10 L 215 ILE PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR SEQRES 11 L 215 ALA SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG SEQRES 12 L 215 GLU ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SEQRES 13 L 215 SER GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SEQRES 15 L 215 SER LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS SEQRES 16 L 215 GLU VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SEQRES 17 L 215 SER PHE ASN ARG GLY GLU CYS HET NAG G 501 14 HET NAG G 502 14 HET NAG G 503 14 HET NAG G 504 14 HET NAG G 505 14 HET NAG G 506 14 HET NAG G 507 14 HET NAG G 508 14 HET GOL G 509 6 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GOL GLYCEROL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 NAG 8(C8 H15 N O6) FORMUL 12 GOL C3 H8 O3 FORMUL 13 HOH *(H2 O) HELIX 1 AA1 SER G 272 GLY G 276 5 5 HELIX 2 AA2 ASN G 357 PHE G 362 1 6 HELIX 3 AA3 GLU L 79 PHE L 83 5 5 HELIX 4 AA4 SER L 121 LYS L 126 1 6 HELIX 5 AA5 LYS L 183 LYS L 188 1 6 SHEET 1 AA1 5 THR G 11 ILE G 16 0 SHEET 2 AA1 5 MET G 139 MET G 146 1 O GLU G 145 N SER G 14 SHEET 3 AA1 5 SER G 124 GLN G 133 -1 N VAL G 128 O ALA G 144 SHEET 4 AA1 5 VAL G 48 ASP G 53 -1 N THR G 49 O ASP G 129 SHEET 5 AA1 5 LEU G 61 ASP G 62 -1 O LEU G 61 N ILE G 50 SHEET 1 AA2 2 LEU G 18 THR G 19 0 SHEET 2 AA2 2 GLY G 234 TYR G 235 -1 O GLY G 234 N THR G 19 SHEET 1 AA3 4 PHE G 25 ILE G 30 0 SHEET 2 AA3 4 LEU G 102 ARG G 107 -1 O LEU G 104 N VAL G 28 SHEET 3 AA3 4 PHE G 92 LEU G 96 -1 N LEU G 93 O THR G 105 SHEET 4 AA3 4 VAL G 75 TYR G 76 -1 N TYR G 76 O LEU G 94 SHEET 1 AA4 2 ASP G 45 VAL G 46 0 SHEET 2 AA4 2 GLY G 66 GLN G 67 -1 O GLY G 66 N VAL G 46 SHEET 1 AA5 7 ASN G 166 SER G 167 0 SHEET 2 AA5 7 ILE G 299 PHE G 305 1 O GLN G 300 N ASN G 166 SHEET 3 AA5 7 ALA G 172 ARG G 175 1 N ALA G 172 O VAL G 304 SHEET 4 AA5 7 GLY G 178 LEU G 187 -1 O GLY G 178 N ARG G 175 SHEET 5 AA5 7 TYR G 260 THR G 267 -1 O TYR G 262 N LEU G 185 SHEET 6 AA5 7 GLY G 242 SER G 247 -1 N ILE G 244 O ARG G 265 SHEET 7 AA5 7 ASN G 226 ASN G 229 -1 N ASN G 226 O LEU G 245 SHEET 1 AA6 6 ASN G 166 SER G 167 0 SHEET 2 AA6 6 ILE G 299 PHE G 305 1 O GLN G 300 N ASN G 166 SHEET 3 AA6 6 SER G 279 SER G 286 -1 N VAL G 283 O ILE G 299 SHEET 4 AA6 6 SER G 197 LEU G 203 -1 N GLU G 201 O TYR G 282 SHEET 5 AA6 6 ASP G 208 ILE G 212 -1 O CYS G 211 N THR G 200 SHEET 6 AA6 6 THR G 231 CYS G 232 -1 O THR G 231 N ILE G 212 SHEET 1 AA7 5 ASN G 318 THR G 323 0 SHEET 2 AA7 5 THR G 415 SER G 422 1 O LYS G 418 N THR G 320 SHEET 3 AA7 5 THR G 402 THR G 408 -1 N LEU G 403 O VAL G 419 SHEET 4 AA7 5 THR G 347 TRP G 352 -1 N THR G 349 O THR G 406 SHEET 5 AA7 5 CYS G 364 TRP G 366 -1 O TRP G 366 N VAL G 348 SHEET 1 AA8 3 ALA G 329 VAL G 333 0 SHEET 2 AA8 3 PHE G 389 VAL G 393 -1 O ILE G 391 N TYR G 331 SHEET 3 AA8 3 ILE G 379 PHE G 383 -1 N SER G 380 O THR G 392 SHEET 1 AA9 2 GLN H 3 VAL H 5 0 SHEET 2 AA9 2 LYS H 23 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 1 AB1 6 GLU H 10 LYS H 12 0 SHEET 2 AB1 6 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 AB1 6 VAL H 89 GLU H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AB1 6 ILE H 34 ALA H 40 -1 N GLN H 39 O VAL H 89 SHEET 5 AB1 6 GLY H 44 ILE H 51 -1 O THR H 48 N TRP H 36 SHEET 6 AB1 6 THR H 57 TYR H 59 -1 O ARG H 58 N TRP H 50 SHEET 1 AB2 4 GLU H 10 LYS H 12 0 SHEET 2 AB2 4 THR H 107 VAL H 111 1 O THR H 110 N GLU H 10 SHEET 3 AB2 4 VAL H 89 GLU H 95 -1 N TYR H 90 O THR H 107 SHEET 4 AB2 4 LEU H 100F TRP H 103 -1 O TYR H 102 N ARG H 94 SHEET 1 AB3 2 THR H 68 ASP H 72 0 SHEET 2 AB3 2 THR H 77 GLU H 81 -1 O GLU H 81 N THR H 68 SHEET 1 AB4 4 SER H 120 LEU H 124 0 SHEET 2 AB4 4 ALA H 137 LYS H 143 -1 O LEU H 141 N PHE H 122 SHEET 3 AB4 4 SER H 177 THR H 183 -1 O SER H 180 N CYS H 140 SHEET 4 AB4 4 VAL H 163 THR H 165 -1 N HIS H 164 O VAL H 181 SHEET 1 AB5 2 THR H 151 TRP H 154 0 SHEET 2 AB5 2 CYS H 196 ASN H 199 -1 O ASN H 197 N SER H 153 SHEET 1 AB6 4 LEU L 4 GLN L 6 0 SHEET 2 AB6 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB6 4 ASP L 70 ILE L 75 -1 O ILE L 75 N ALA L 19 SHEET 4 AB6 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AB7 4 PRO L 44 ILE L 48 0 SHEET 2 AB7 4 LEU L 33 GLN L 38 -1 N TRP L 35 O LEU L 47 SHEET 3 AB7 4 VAL L 85 TYR L 90 -1 O TYR L 87 N TYR L 36 SHEET 4 AB7 4 THR L 102 LYS L 103 -1 O THR L 102 N TYR L 86 SHEET 1 AB8 4 VAL L 115 PHE L 118 0 SHEET 2 AB8 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB8 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB8 4 SER L 159 THR L 164 -1 N SER L 162 O SER L 176 SHEET 1 AB9 4 LEU L 154 GLN L 155 0 SHEET 2 AB9 4 ALA L 144 LYS L 149 -1 N TRP L 148 O GLN L 155 SHEET 3 AB9 4 VAL L 191 HIS L 198 -1 O ALA L 193 N LYS L 149 SHEET 4 AB9 4 VAL L 205 ASN L 210 -1 O VAL L 205 N VAL L 196 SSBOND 1 CYS G 8 CYS G 141 1555 1555 2.03 SSBOND 2 CYS G 39 CYS G 42 1555 1555 2.03 SSBOND 3 CYS G 165 CYS G 298 1555 1555 2.03 SSBOND 4 CYS G 211 CYS G 232 1555 1555 2.03 SSBOND 5 CYS G 364 CYS G 376 1555 1555 2.03 SSBOND 6 CYS H 22 CYS H 92 1555 1555 2.03 SSBOND 7 CYS H 140 CYS H 196 1555 1555 2.03 SSBOND 8 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 9 CYS L 134 CYS L 194 1555 1555 2.03 LINK ND2 ASN G 47 C1 NAG G 502 1555 1555 1.36 LINK ND2 ASN G 166 C1 NAG G 501 1555 1555 1.34 LINK ND2 ASN G 229 C1 NAG G 503 1555 1555 1.36 LINK ND2 ASN G 277 C1 NAG G 504 1555 1555 1.36 LINK ND2 ASN G 345 C1 NAG G 508 1555 1555 1.37 LINK ND2 ASN G 356 C1 NAG G 507 1555 1555 1.35 LINK ND2 ASN G 386 C1 NAG G 506 1555 1555 1.36 LINK ND2 ASN G 411 C1 NAG G 505 1555 1555 1.36 SITE 1 AC1 5 LEU G 6 ASP G 45 ASN G 47 ASP G 64 SITE 2 AC1 5 PHE G 82 SITE 1 AC2 3 ASN G 166 TYR G 297 SER H 76 SITE 1 AC3 1 ASN G 229 SITE 1 AC4 3 ASN G 277 VAL G 304 ASP G 307 SITE 1 AC5 3 GLN G 9 ASN G 345 ASP L 151 SITE 1 AC6 4 SER G 332 ALA G 353 TRP G 354 ASN G 356 SITE 1 AC7 2 ASN G 386 PRO G 400 SITE 1 AC8 5 THR G 11 ASN G 411 LYS L 149 ASN L 152 SITE 2 AC8 5 LEU L 154 CRYST1 164.082 54.683 137.220 90.00 111.71 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006095 0.000000 0.002427 0.00000 SCALE2 0.000000 0.018287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007844 0.00000