HEADER HYDROLASE/INHIBITOR 04-MAY-23 8SQF TITLE OXA-48 BOUND TO INHIBITOR CDD-2725 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: B, A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: OXA-48 BETA-LACTAMASE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: BLA OXA-48; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS CARBAPENEMASE, BETA-LACTAMASE, SMALL MOLECULE, HYDROLASE-INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.PARK,A.JUDGE,J.FAN,B.SANKARAN,B.V.V.PRASAD,T.PALZKILL REVDAT 2 17-JAN-24 8SQF 1 JRNL REVDAT 1 03-JAN-24 8SQF 0 JRNL AUTH S.PARK,J.FAN,S.CHAMAKURI,M.PALANIAPPAN,K.SHARMA,X.QIN, JRNL AUTH 2 J.WANG,Z.TAN,A.JUDGE,L.HU,B.SANKARAN,F.LI,B.V.V.PRASAD, JRNL AUTH 3 M.M.MATZUK,T.PALZKILL JRNL TITL EXPLOITING THE CARBOXYLATE-BINDING POCKET OF BETA-LACTAMASE JRNL TITL 2 ENZYMES USING A FOCUSED DNA-ENCODED CHEMICAL LIBRARY. JRNL REF J.MED.CHEM. V. 67 620 2024 JRNL REFN ISSN 0022-2623 JRNL PMID 38117688 JRNL DOI 10.1021/ACS.JMEDCHEM.3C01834 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 32305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1647 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.37 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2265 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.44 REMARK 3 BIN R VALUE (WORKING SET) : 0.2541 REMARK 3 BIN FREE R VALUE SET COUNT : 132 REMARK 3 BIN FREE R VALUE : 0.3117 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3946 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 225 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.262 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.10 REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SQF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274188. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 7.4.0 REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56843 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 33.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : 16.00 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.4 REMARK 200 DATA REDUNDANCY IN SHELL : 16.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 3.60.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.83 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (V/V) PEG 550 MME, 0.1 M TRIS-HCL REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 107.83933 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.91967 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 80.87950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.95983 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 134.79917 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 107.83933 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 53.91967 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.95983 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 80.87950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 134.79917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 498 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 508 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ARG B 2 REMARK 465 VAL B 3 REMARK 465 LEU B 4 REMARK 465 ALA B 5 REMARK 465 LEU B 6 REMARK 465 SER B 7 REMARK 465 ALA B 8 REMARK 465 VAL B 9 REMARK 465 PHE B 10 REMARK 465 LEU B 11 REMARK 465 VAL B 12 REMARK 465 ALA B 13 REMARK 465 SER B 14 REMARK 465 ILE B 15 REMARK 465 ILE B 16 REMARK 465 GLY B 17 REMARK 465 MET B 18 REMARK 465 PRO B 19 REMARK 465 ALA B 20 REMARK 465 VAL B 21 REMARK 465 ALA B 22 REMARK 465 MET A 1 REMARK 465 ARG A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 ALA A 5 REMARK 465 LEU A 6 REMARK 465 SER A 7 REMARK 465 ALA A 8 REMARK 465 VAL A 9 REMARK 465 PHE A 10 REMARK 465 LEU A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 SER A 14 REMARK 465 ILE A 15 REMARK 465 ILE A 16 REMARK 465 GLY A 17 REMARK 465 MET A 18 REMARK 465 PRO A 19 REMARK 465 ALA A 20 REMARK 465 VAL A 21 REMARK 465 ALA A 22 REMARK 465 LYS A 23 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 29 CD CE NZ REMARK 470 GLU B 37 OE1 OE2 REMARK 470 GLN B 41 CG CD OE1 NE2 REMARK 470 GLN B 53 CD OE1 NE2 REMARK 470 GLU B 132 CD OE1 OE2 REMARK 470 LYS B 180 CD CE NZ REMARK 470 ASP B 230 OD1 REMARK 470 LYS A 39 CD CE NZ REMARK 470 GLN A 98 OE1 NE2 REMARK 470 LYS A 137 CD CE NZ REMARK 470 LYS A 180 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 58 92.55 -166.45 REMARK 500 ALA B 69 -138.93 49.75 REMARK 500 SER B 155 9.25 -159.01 REMARK 500 ASP B 159 18.11 -154.79 REMARK 500 HIS B 182 42.96 -73.82 REMARK 500 ASN A 28 79.75 -157.18 REMARK 500 ASN A 58 94.09 -165.85 REMARK 500 ALA A 69 -138.52 41.89 REMARK 500 ASP A 88 -176.50 -173.13 REMARK 500 ASP A 88 -176.50 -172.62 REMARK 500 ASN A 106 47.51 -89.51 REMARK 500 SER A 155 7.27 -152.87 REMARK 500 ASP A 159 20.12 -156.44 REMARK 500 REMARK 500 REMARK: NULL DBREF 8SQF B 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 DBREF 8SQF A 1 265 UNP Q6XEC0 Q6XEC0_KLEPN 1 265 SEQRES 1 B 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 B 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 B 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 B 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 B 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 B 265 PHE LEU PRO ALA SER THR PHE KCX ILE PRO ASN SER LEU SEQRES 7 B 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 B 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 B 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 B 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 B 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 B 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 B 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 B 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 B 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 B 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 B 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 B 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 B 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 B 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 B 265 GLU LYS ILE ILE PRO SEQRES 1 A 265 MET ARG VAL LEU ALA LEU SER ALA VAL PHE LEU VAL ALA SEQRES 2 A 265 SER ILE ILE GLY MET PRO ALA VAL ALA LYS GLU TRP GLN SEQRES 3 A 265 GLU ASN LYS SER TRP ASN ALA HIS PHE THR GLU HIS LYS SEQRES 4 A 265 SER GLN GLY VAL VAL VAL LEU TRP ASN GLU ASN LYS GLN SEQRES 5 A 265 GLN GLY PHE THR ASN ASN LEU LYS ARG ALA ASN GLN ALA SEQRES 6 A 265 PHE LEU PRO ALA SER THR PHE KCX ILE PRO ASN SER LEU SEQRES 7 A 265 ILE ALA LEU ASP LEU GLY VAL VAL LYS ASP GLU HIS GLN SEQRES 8 A 265 VAL PHE LYS TRP ASP GLY GLN THR ARG ASP ILE ALA THR SEQRES 9 A 265 TRP ASN ARG ASP HIS ASN LEU ILE THR ALA MET LYS TYR SEQRES 10 A 265 SER VAL VAL PRO VAL TYR GLN GLU PHE ALA ARG GLN ILE SEQRES 11 A 265 GLY GLU ALA ARG MET SER LYS MET LEU HIS ALA PHE ASP SEQRES 12 A 265 TYR GLY ASN GLU ASP ILE SER GLY ASN VAL ASP SER PHE SEQRES 13 A 265 TRP LEU ASP GLY GLY ILE ARG ILE SER ALA THR GLU GLN SEQRES 14 A 265 ILE SER PHE LEU ARG LYS LEU TYR HIS ASN LYS LEU HIS SEQRES 15 A 265 VAL SER GLU ARG SER GLN ARG ILE VAL LYS GLN ALA MET SEQRES 16 A 265 LEU THR GLU ALA ASN GLY ASP TYR ILE ILE ARG ALA LYS SEQRES 17 A 265 THR GLY TYR SER THR ARG ILE GLU PRO LYS ILE GLY TRP SEQRES 18 A 265 TRP VAL GLY TRP VAL GLU LEU ASP ASP ASN VAL TRP PHE SEQRES 19 A 265 PHE ALA MET ASN MET ASP MET PRO THR SER ASP GLY LEU SEQRES 20 A 265 GLY LEU ARG GLN ALA ILE THR LYS GLU VAL LEU LYS GLN SEQRES 21 A 265 GLU LYS ILE ILE PRO MODRES 8SQF KCX B 73 LYS MODIFIED RESIDUE MODRES 8SQF KCX A 73 LYS MODIFIED RESIDUE HET KCX B 73 12 HET KCX A 73 12 HET WIP B 301 27 HET BCT B 302 4 HET WIP A 301 27 HET BCT A 302 4 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM WIP (1M)-3'-(BENZYLOXY)-5-HYDROXY[1,1'-BIPHENYL]-3,4'- HETNAM 2 WIP DICARBOXYLIC ACID HETNAM BCT BICARBONATE ION FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 WIP 2(C21 H16 O6) FORMUL 4 BCT 2(C H O3 1-) FORMUL 7 HOH *225(H2 O) HELIX 1 AA1 ASN B 28 SER B 30 5 3 HELIX 2 AA2 TRP B 31 HIS B 38 1 8 HELIX 3 AA3 LYS B 60 GLN B 64 5 5 HELIX 4 AA4 PRO B 68 THR B 71 5 4 HELIX 5 AA5 PHE B 72 LEU B 83 1 12 HELIX 6 AA6 ILE B 102 ASN B 106 5 5 HELIX 7 AA7 ASN B 110 TYR B 117 1 8 HELIX 8 AA8 VAL B 119 GLY B 131 1 13 HELIX 9 AA9 GLY B 131 PHE B 142 1 12 HELIX 10 AB1 SER B 155 GLY B 160 1 6 HELIX 11 AB2 SER B 165 HIS B 178 1 14 HELIX 12 AB3 SER B 184 MET B 195 1 12 HELIX 13 AB4 THR B 243 LEU B 247 5 5 HELIX 14 AB5 GLY B 248 GLU B 261 1 14 HELIX 15 AB6 TRP A 31 GLU A 37 1 7 HELIX 16 AB7 ASN A 58 GLN A 64 1 7 HELIX 17 AB8 PRO A 68 THR A 71 5 4 HELIX 18 AB9 PHE A 72 LEU A 83 1 12 HELIX 19 AC1 ILE A 102 ASN A 106 5 5 HELIX 20 AC2 ASN A 110 TYR A 117 1 8 HELIX 21 AC3 VAL A 119 GLY A 131 1 13 HELIX 22 AC4 GLY A 131 ASP A 143 1 13 HELIX 23 AC5 SER A 155 GLY A 160 1 6 HELIX 24 AC6 ALA A 166 HIS A 178 1 13 HELIX 25 AC7 SER A 184 MET A 195 1 12 HELIX 26 AC8 THR A 243 LEU A 247 5 5 HELIX 27 AC9 GLY A 248 GLU A 261 1 14 SHEET 1 AA1 6 GLN B 53 THR B 56 0 SHEET 2 AA1 6 GLY B 42 ASN B 48 -1 N LEU B 46 O PHE B 55 SHEET 3 AA1 6 VAL B 232 ASP B 240 -1 O ASN B 238 N VAL B 43 SHEET 4 AA1 6 ILE B 219 GLU B 227 -1 N GLY B 224 O PHE B 235 SHEET 5 AA1 6 ILE B 204 SER B 212 -1 N ILE B 204 O GLU B 227 SHEET 6 AA1 6 LEU B 196 ALA B 199 -1 N GLU B 198 O ILE B 205 SHEET 1 AA2 7 TRP A 25 GLU A 27 0 SHEET 2 AA2 7 GLN A 53 THR A 56 1 O THR A 56 N GLN A 26 SHEET 3 AA2 7 GLY A 42 ASN A 48 -1 N ASN A 48 O GLN A 53 SHEET 4 AA2 7 VAL A 232 ASP A 240 -1 O ASN A 238 N VAL A 43 SHEET 5 AA2 7 ILE A 219 GLU A 227 -1 N GLY A 220 O MET A 239 SHEET 6 AA2 7 ILE A 204 SER A 212 -1 N GLY A 210 O TRP A 221 SHEET 7 AA2 7 LEU A 196 ALA A 199 -1 N GLU A 198 O ILE A 205 SHEET 1 AA3 2 ALA A 65 PHE A 66 0 SHEET 2 AA3 2 ILE A 164 SER A 165 -1 O ILE A 164 N PHE A 66 LINK C PHE B 72 N KCX B 73 1555 1555 1.33 LINK C KCX B 73 N ILE B 74 1555 1555 1.34 LINK C PHE A 72 N KCX A 73 1555 1555 1.33 LINK C KCX A 73 N ILE A 74 1555 1555 1.34 CISPEP 1 GLU B 216 PRO B 217 0 4.86 CISPEP 2 GLU A 216 PRO A 217 0 0.35 CRYST1 123.083 123.083 161.759 90.00 90.00 120.00 P 65 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008125 0.004691 0.000000 0.00000 SCALE2 0.000000 0.009381 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006182 0.00000 CONECT 398 407 CONECT 407 398 408 CONECT 408 407 409 414 CONECT 409 408 410 CONECT 410 409 411 CONECT 411 410 412 CONECT 412 411 413 CONECT 413 412 416 CONECT 414 408 415 419 CONECT 415 414 CONECT 416 413 417 418 CONECT 417 416 CONECT 418 416 CONECT 419 414 CONECT 2377 2386 CONECT 2386 2377 2387 CONECT 2387 2386 2388 2393 CONECT 2388 2387 2389 CONECT 2389 2388 2390 CONECT 2390 2389 2391 CONECT 2391 2390 2392 CONECT 2392 2391 2395 CONECT 2393 2387 2394 2398 CONECT 2394 2393 CONECT 2395 2392 2396 2397 CONECT 2396 2395 CONECT 2397 2395 CONECT 2398 2393 CONECT 3971 3973 3986 3987 CONECT 3972 3987 3988 CONECT 3973 3971 3989 CONECT 3974 3980 3985 CONECT 3975 3979 3990 CONECT 3976 3990 3996 3997 CONECT 3977 3978 3991 3992 CONECT 3978 3977 3979 CONECT 3979 3975 3978 3980 CONECT 3980 3974 3979 3981 CONECT 3981 3980 3982 CONECT 3982 3981 3983 CONECT 3983 3982 3984 3985 CONECT 3984 3983 3993 3994 CONECT 3985 3974 3983 3995 CONECT 3986 3971 3995 CONECT 3987 3971 3972 CONECT 3988 3972 3989 CONECT 3989 3973 3988 CONECT 3990 3975 3976 3991 CONECT 3991 3977 3990 CONECT 3992 3977 CONECT 3993 3984 CONECT 3994 3984 CONECT 3995 3985 3986 CONECT 3996 3976 CONECT 3997 3976 CONECT 3998 3999 4000 4001 CONECT 3999 3998 CONECT 4000 3998 CONECT 4001 3998 CONECT 4002 4004 4017 4018 CONECT 4003 4018 4019 CONECT 4004 4002 4020 CONECT 4005 4011 4016 CONECT 4006 4010 4021 CONECT 4007 4021 4027 4028 CONECT 4008 4009 4022 4023 CONECT 4009 4008 4010 CONECT 4010 4006 4009 4011 CONECT 4011 4005 4010 4012 CONECT 4012 4011 4013 CONECT 4013 4012 4014 CONECT 4014 4013 4015 4016 CONECT 4015 4014 4024 4025 CONECT 4016 4005 4014 4026 CONECT 4017 4002 4026 CONECT 4018 4002 4003 CONECT 4019 4003 4020 CONECT 4020 4004 4019 CONECT 4021 4006 4007 4022 CONECT 4022 4008 4021 CONECT 4023 4008 CONECT 4024 4015 CONECT 4025 4015 CONECT 4026 4016 4017 CONECT 4027 4007 CONECT 4028 4007 CONECT 4029 4030 4031 4032 CONECT 4030 4029 CONECT 4031 4029 CONECT 4032 4029 MASTER 380 0 6 27 15 0 0 6 4233 2 90 42 END