HEADER VIRAL PROTEIN 04-MAY-23 8SQJ TITLE SARS-COV-2 REPLICATION-TRANSCRIPTION COMPLEX BOUND TO RNA-NSP9, AS A TITLE 2 NONCATALYTIC RNA-NSP9 BINDING MODE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DIRECTED RNA POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 4393-5324; COMPND 5 SYNONYM: POL, RDRP, NON-STRUCTURAL PROTEIN 12, NSP12; COMPND 6 EC: 2.7.7.48; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: NON-STRUCTURAL PROTEIN 8; COMPND 10 CHAIN: B, D; COMPND 11 SYNONYM: NSP8; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: NON-STRUCTURAL PROTEIN 7; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: NSP7; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 4; COMPND 19 MOLECULE: NON-STRUCTURAL PROTEIN 9; COMPND 20 CHAIN: G; COMPND 21 SYNONYM: NSP9; COMPND 22 ENGINEERED: YES; COMPND 23 MOL_ID: 5; COMPND 24 MOLECULE: PRIMER RNA; COMPND 25 CHAIN: P; COMPND 26 ENGINEERED: YES; COMPND 27 MOL_ID: 6; COMPND 28 MOLECULE: TEMPLATE RNA; COMPND 29 CHAIN: T; COMPND 30 ENGINEERED: YES; COMPND 31 MOL_ID: 7; COMPND 32 MOLECULE: SARS-COV-2 5' UTR; COMPND 33 CHAIN: O; COMPND 34 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_TAXID: 2697049; SOURCE 5 GENE: REP, 1A-1B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 10 2; SOURCE 11 ORGANISM_TAXID: 2697049; SOURCE 12 GENE: REP, 1A-1B; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 17 2; SOURCE 18 ORGANISM_TAXID: 2697049; SOURCE 19 GENE: REP, 1A-1B; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 MOL_ID: 4; SOURCE 23 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 24 2; SOURCE 25 ORGANISM_TAXID: 2697049; SOURCE 26 GENE: REP, 1A-1B; SOURCE 27 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 28 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 29 MOL_ID: 5; SOURCE 30 SYNTHETIC: YES; SOURCE 31 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS; SOURCE 32 ORGANISM_TAXID: 2901879; SOURCE 33 MOL_ID: 6; SOURCE 34 SYNTHETIC: YES; SOURCE 35 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS; SOURCE 36 ORGANISM_TAXID: 2901879; SOURCE 37 MOL_ID: 7; SOURCE 38 SYNTHETIC: YES; SOURCE 39 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 40 2; SOURCE 41 ORGANISM_TAXID: 2697049 KEYWDS RTC, NSP12, NSP9, NIRAN, SARS-COV-2, DERNAYLATION, MRNA CAPPING, KEYWDS 2 UMPCPP, VIRAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR G.I.SMALL,S.A.DARST,E.A.CAMPBELL REVDAT 1 22-NOV-23 8SQJ 0 JRNL AUTH G.I.SMALL,O.FEDOROVA,P.D.B.OLINARES,J.CHANDANANI,A.BANERJEE, JRNL AUTH 2 Y.J.CHOI,H.MOLINA,B.T.CHAIT,S.A.DARST,E.A.CAMPBELL JRNL TITL STRUCTURAL AND FUNCTIONAL INSIGHTS INTO THE ENZYMATIC JRNL TITL 2 PLASTICITY OF THE SARS-COV-2 NIRAN DOMAIN. JRNL REF MOL.CELL V. 83 3921 2023 JRNL REFN ISSN 1097-2765 JRNL PMID 37890482 JRNL DOI 10.1016/J.MOLCEL.2023.10.001 REMARK 2 REMARK 2 RESOLUTION. 3.06 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.060 REMARK 3 NUMBER OF PARTICLES : 113260 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8SQJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274271. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SARS-COV-2 REPLICATION REMARK 245 -TRANSCRIPTION COMPLEX BOUND TO REMARK 245 RNA-NSP9, AS A NONCATALYTIC RNA- REMARK 245 NSP9 BINDING MODE REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 BIOQUANTUM (6K X REMARK 245 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5151.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, G, P, T, O REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 930 REMARK 465 LEU A 931 REMARK 465 GLN A 932 REMARK 465 ALA B 1 REMARK 465 ILE B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 GLU B 5 REMARK 465 SER B 193 REMARK 465 ALA B 194 REMARK 465 VAL B 195 REMARK 465 LYS B 196 REMARK 465 LEU B 197 REMARK 465 GLN B 198 REMARK 465 SER C 1 REMARK 465 GLU C 74 REMARK 465 MET C 75 REMARK 465 LEU C 76 REMARK 465 ASP C 77 REMARK 465 ASN C 78 REMARK 465 ARG C 79 REMARK 465 ALA C 80 REMARK 465 THR C 81 REMARK 465 LEU C 82 REMARK 465 GLN C 83 REMARK 465 ALA D 1 REMARK 465 ILE D 2 REMARK 465 ALA D 3 REMARK 465 SER D 4 REMARK 465 GLU D 5 REMARK 465 PHE D 6 REMARK 465 ASN D 192 REMARK 465 SER D 193 REMARK 465 ALA D 194 REMARK 465 VAL D 195 REMARK 465 LYS D 196 REMARK 465 LEU D 197 REMARK 465 GLN D 198 REMARK 465 C P -1 REMARK 465 G P 0 REMARK 465 C P 1 REMARK 465 G P 2 REMARK 465 U P 3 REMARK 465 C T 85 REMARK 465 U T 86 REMARK 465 A T 87 REMARK 465 U T 88 REMARK 465 C T 89 REMARK 465 C T 90 REMARK 465 C T 91 REMARK 465 C T 92 REMARK 465 A T 93 REMARK 465 U T 94 REMARK 465 U T 95 REMARK 465 U T 96 REMARK 465 U T 97 REMARK 465 G T 98 REMARK 465 U T 99 REMARK 465 A T 135 REMARK 465 C T 136 REMARK 465 G T 137 REMARK 465 C T 138 REMARK 465 G T 139 REMARK 465 U O 10 REMARK 465 U O 11 REMARK 465 A O 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE B 6 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 20 CG CD OE1 OE2 REMARK 470 GLU B 23 CG CD OE1 OE2 REMARK 470 GLN B 24 CG CD OE1 NE2 REMARK 470 VAL B 26 CG1 CG2 REMARK 470 ASN B 28 CG OD1 ND2 REMARK 470 ASP B 30 CG OD1 OD2 REMARK 470 GLU B 32 CG CD OE1 OE2 REMARK 470 LEU B 35 CG CD1 CD2 REMARK 470 LYS B 36 CG CD CE NZ REMARK 470 SER D 8 OG REMARK 470 GLU D 20 CG CD OE1 OE2 REMARK 470 GLU D 23 CG CD OE1 OE2 REMARK 470 GLN D 24 CG CD OE1 NE2 REMARK 470 ASN D 28 CG OD1 ND2 REMARK 470 ASP D 30 CG OD1 OD2 REMARK 470 ASP G 47 CG OD1 OD2 REMARK 470 ASP G 50 CG OD1 OD2 REMARK 470 ARG G 55 CG CD NE CZ NH1 NH2 REMARK 470 LYS G 58 CG CD CE NZ REMARK 470 SER G 59 OG REMARK 470 ASP G 60 CG OD1 OD2 REMARK 470 THR G 62 OG1 CG2 REMARK 470 LYS G 84 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H2 ASN G 1 P A O 1 1.24 REMARK 500 H1 ASN G 1 P A O 1 1.38 REMARK 500 O4 U P 15 H61 A T 123 1.59 REMARK 500 O2' G P 35 O4' VSN A 1001 2.02 REMARK 500 NZ LYS A 718 OP1 C O 20 2.14 REMARK 500 NH2 ARG A 726 OD2 ASP A 738 2.15 REMARK 500 O ASN B 100 ND2 ASN B 104 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 21 61.08 -69.68 REMARK 500 VAL A 31 -63.26 -99.79 REMARK 500 TYR A 217 10.48 -143.21 REMARK 500 SER A 384 58.16 -96.31 REMARK 500 SER A 607 -134.85 51.79 REMARK 500 VAL A 662 -53.18 -129.38 REMARK 500 SER A 759 -119.33 56.62 REMARK 500 ASP D 30 35.24 72.00 REMARK 500 LEU D 122 67.76 -101.41 REMARK 500 GLN D 158 148.80 -172.55 REMARK 500 ASP G 26 109.53 -56.86 REMARK 500 ASN G 27 24.06 -141.69 REMARK 500 LEU G 112 -1.60 68.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 208 OD2 REMARK 620 2 ASN A 209 OD1 80.9 REMARK 620 3 A O 1 OP1 84.4 128.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1003 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 295 ND1 REMARK 620 2 CYS A 301 SG 109.4 REMARK 620 3 CYS A 306 SG 110.3 103.7 REMARK 620 4 CYS A 310 SG 108.2 102.2 122.1 REMARK 620 5 HOH A1159 O 94.1 155.9 71.4 64.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1004 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 487 SG REMARK 620 2 HIS A 642 ND1 108.1 REMARK 620 3 CYS A 645 SG 101.1 104.6 REMARK 620 4 CYS A 646 SG 112.4 126.2 100.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8SQ9 RELATED DB: PDB REMARK 900 RELATED ID: EMD-40699 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-40707 RELATED DB: EMDB REMARK 900 SARS-COV-2 REPLICATION-TRANSCRIPTION COMPLEX BOUND TO RNA-NSP9, AS REMARK 900 A NONCATALYTIC RNA-NSP9 BINDING MODE DBREF 8SQJ A 1 932 UNP P0DTD1 R1AB_SARS2 4393 5324 DBREF 8SQJ B 1 198 UNP P0DTD1 R1AB_SARS2 3943 4140 DBREF 8SQJ C 1 83 UNP P0DTD1 R1AB_SARS2 3860 3942 DBREF 8SQJ D 1 198 UNP P0DTD1 R1AB_SARS2 3943 4140 DBREF 8SQJ G 1 113 UNP P0DTD1 R1AB_SARS2 4141 4253 DBREF 8SQJ P -1 35 PDB 8SQJ 8SQJ -1 35 DBREF 8SQJ T 85 139 PDB 8SQJ 8SQJ 85 139 DBREF 8SQJ O 1 20 PDB 8SQJ 8SQJ 1 20 SEQRES 1 A 932 SER ALA ASP ALA GLN SER PHE LEU ASN ARG VAL CYS GLY SEQRES 2 A 932 VAL SER ALA ALA ARG LEU THR PRO CYS GLY THR GLY THR SEQRES 3 A 932 SER THR ASP VAL VAL TYR ARG ALA PHE ASP ILE TYR ASN SEQRES 4 A 932 ASP LYS VAL ALA GLY PHE ALA LYS PHE LEU LYS THR ASN SEQRES 5 A 932 CYS CYS ARG PHE GLN GLU LYS ASP GLU ASP ASP ASN LEU SEQRES 6 A 932 ILE ASP SER TYR PHE VAL VAL LYS ARG HIS THR PHE SER SEQRES 7 A 932 ASN TYR GLN HIS GLU GLU THR ILE TYR ASN LEU LEU LYS SEQRES 8 A 932 ASP CYS PRO ALA VAL ALA LYS HIS ASP PHE PHE LYS PHE SEQRES 9 A 932 ARG ILE ASP GLY ASP MET VAL PRO HIS ILE SER ARG GLN SEQRES 10 A 932 ARG LEU THR LYS TYR THR MET ALA ASP LEU VAL TYR ALA SEQRES 11 A 932 LEU ARG HIS PHE ASP GLU GLY ASN CYS ASP THR LEU LYS SEQRES 12 A 932 GLU ILE LEU VAL THR TYR ASN CYS CYS ASP ASP ASP TYR SEQRES 13 A 932 PHE ASN LYS LYS ASP TRP TYR ASP PHE VAL GLU ASN PRO SEQRES 14 A 932 ASP ILE LEU ARG VAL TYR ALA ASN LEU GLY GLU ARG VAL SEQRES 15 A 932 ARG GLN ALA LEU LEU LYS THR VAL GLN PHE CYS ASP ALA SEQRES 16 A 932 MET ARG ASN ALA GLY ILE VAL GLY VAL LEU THR LEU ASP SEQRES 17 A 932 ASN GLN ASP LEU ASN GLY ASN TRP TYR ASP PHE GLY ASP SEQRES 18 A 932 PHE ILE GLN THR THR PRO GLY SER GLY VAL PRO VAL VAL SEQRES 19 A 932 ASP SER TYR TYR SER LEU LEU MET PRO ILE LEU THR LEU SEQRES 20 A 932 THR ARG ALA LEU THR ALA GLU SER HIS VAL ASP THR ASP SEQRES 21 A 932 LEU THR LYS PRO TYR ILE LYS TRP ASP LEU LEU LYS TYR SEQRES 22 A 932 ASP PHE THR GLU GLU ARG LEU LYS LEU PHE ASP ARG TYR SEQRES 23 A 932 PHE LYS TYR TRP ASP GLN THR TYR HIS PRO ASN CYS VAL SEQRES 24 A 932 ASN CYS LEU ASP ASP ARG CYS ILE LEU HIS CYS ALA ASN SEQRES 25 A 932 PHE ASN VAL LEU PHE SER THR VAL PHE PRO PRO THR SER SEQRES 26 A 932 PHE GLY PRO LEU VAL ARG LYS ILE PHE VAL ASP GLY VAL SEQRES 27 A 932 PRO PHE VAL VAL SER THR GLY TYR HIS PHE ARG GLU LEU SEQRES 28 A 932 GLY VAL VAL HIS ASN GLN ASP VAL ASN LEU HIS SER SER SEQRES 29 A 932 ARG LEU SER PHE LYS GLU LEU LEU VAL TYR ALA ALA ASP SEQRES 30 A 932 PRO ALA MET HIS ALA ALA SER GLY ASN LEU LEU LEU ASP SEQRES 31 A 932 LYS ARG THR THR CYS PHE SER VAL ALA ALA LEU THR ASN SEQRES 32 A 932 ASN VAL ALA PHE GLN THR VAL LYS PRO GLY ASN PHE ASN SEQRES 33 A 932 LYS ASP PHE TYR ASP PHE ALA VAL SER LYS GLY PHE PHE SEQRES 34 A 932 LYS GLU GLY SER SER VAL GLU LEU LYS HIS PHE PHE PHE SEQRES 35 A 932 ALA GLN ASP GLY ASN ALA ALA ILE SER ASP TYR ASP TYR SEQRES 36 A 932 TYR ARG TYR ASN LEU PRO THR MET CYS ASP ILE ARG GLN SEQRES 37 A 932 LEU LEU PHE VAL VAL GLU VAL VAL ASP LYS TYR PHE ASP SEQRES 38 A 932 CYS TYR ASP GLY GLY CYS ILE ASN ALA ASN GLN VAL ILE SEQRES 39 A 932 VAL ASN ASN LEU ASP LYS SER ALA GLY PHE PRO PHE ASN SEQRES 40 A 932 LYS TRP GLY LYS ALA ARG LEU TYR TYR ASP SER MET SER SEQRES 41 A 932 TYR GLU ASP GLN ASP ALA LEU PHE ALA TYR THR LYS ARG SEQRES 42 A 932 ASN VAL ILE PRO THR ILE THR GLN MET ASN LEU LYS TYR SEQRES 43 A 932 ALA ILE SER ALA LYS ASN ARG ALA ARG THR VAL ALA GLY SEQRES 44 A 932 VAL SER ILE CYS SER THR MET THR ASN ARG GLN PHE HIS SEQRES 45 A 932 GLN LYS LEU LEU LYS SER ILE ALA ALA THR ARG GLY ALA SEQRES 46 A 932 THR VAL VAL ILE GLY THR SER LYS PHE TYR GLY GLY TRP SEQRES 47 A 932 HIS ASN MET LEU LYS THR VAL TYR SER ASP VAL GLU ASN SEQRES 48 A 932 PRO HIS LEU MET GLY TRP ASP TYR PRO LYS CYS ASP ARG SEQRES 49 A 932 ALA MET PRO ASN MET LEU ARG ILE MET ALA SER LEU VAL SEQRES 50 A 932 LEU ALA ARG LYS HIS THR THR CYS CYS SER LEU SER HIS SEQRES 51 A 932 ARG PHE TYR ARG LEU ALA ASN GLU CYS ALA GLN VAL LEU SEQRES 52 A 932 SER GLU MET VAL MET CYS GLY GLY SER LEU TYR VAL LYS SEQRES 53 A 932 PRO GLY GLY THR SER SER GLY ASP ALA THR THR ALA TYR SEQRES 54 A 932 ALA ASN SER VAL PHE ASN ILE CYS GLN ALA VAL THR ALA SEQRES 55 A 932 ASN VAL ASN ALA LEU LEU SER THR ASP GLY ASN LYS ILE SEQRES 56 A 932 ALA ASP LYS TYR VAL ARG ASN LEU GLN HIS ARG LEU TYR SEQRES 57 A 932 GLU CYS LEU TYR ARG ASN ARG ASP VAL ASP THR ASP PHE SEQRES 58 A 932 VAL ASN GLU PHE TYR ALA TYR LEU ARG LYS HIS PHE SER SEQRES 59 A 932 MET MET ILE LEU SER ASP ASP ALA VAL VAL CYS PHE ASN SEQRES 60 A 932 SER THR TYR ALA SER GLN GLY LEU VAL ALA SER ILE LYS SEQRES 61 A 932 ASN PHE LYS SER VAL LEU TYR TYR GLN ASN ASN VAL PHE SEQRES 62 A 932 MET SER GLU ALA LYS CYS TRP THR GLU THR ASP LEU THR SEQRES 63 A 932 LYS GLY PRO HIS GLU PHE CYS SER GLN HIS THR MET LEU SEQRES 64 A 932 VAL LYS GLN GLY ASP ASP TYR VAL TYR LEU PRO TYR PRO SEQRES 65 A 932 ASP PRO SER ARG ILE LEU GLY ALA GLY CYS PHE VAL ASP SEQRES 66 A 932 ASP ILE VAL LYS THR ASP GLY THR LEU MET ILE GLU ARG SEQRES 67 A 932 PHE VAL SER LEU ALA ILE ASP ALA TYR PRO LEU THR LYS SEQRES 68 A 932 HIS PRO ASN GLN GLU TYR ALA ASP VAL PHE HIS LEU TYR SEQRES 69 A 932 LEU GLN TYR ILE ARG LYS LEU HIS ASP GLU LEU THR GLY SEQRES 70 A 932 HIS MET LEU ASP MET TYR SER VAL MET LEU THR ASN ASP SEQRES 71 A 932 ASN THR SER ARG TYR TRP GLU PRO GLU PHE TYR GLU ALA SEQRES 72 A 932 MET TYR THR PRO HIS THR VAL LEU GLN SEQRES 1 B 198 ALA ILE ALA SER GLU PHE SER SER LEU PRO SER TYR ALA SEQRES 2 B 198 ALA PHE ALA THR ALA GLN GLU ALA TYR GLU GLN ALA VAL SEQRES 3 B 198 ALA ASN GLY ASP SER GLU VAL VAL LEU LYS LYS LEU LYS SEQRES 4 B 198 LYS SER LEU ASN VAL ALA LYS SER GLU PHE ASP ARG ASP SEQRES 5 B 198 ALA ALA MET GLN ARG LYS LEU GLU LYS MET ALA ASP GLN SEQRES 6 B 198 ALA MET THR GLN MET TYR LYS GLN ALA ARG SER GLU ASP SEQRES 7 B 198 LYS ARG ALA LYS VAL THR SER ALA MET GLN THR MET LEU SEQRES 8 B 198 PHE THR MET LEU ARG LYS LEU ASP ASN ASP ALA LEU ASN SEQRES 9 B 198 ASN ILE ILE ASN ASN ALA ARG ASP GLY CYS VAL PRO LEU SEQRES 10 B 198 ASN ILE ILE PRO LEU THR THR ALA ALA LYS LEU MET VAL SEQRES 11 B 198 VAL ILE PRO ASP TYR ASN THR TYR LYS ASN THR CYS ASP SEQRES 12 B 198 GLY THR THR PHE THR TYR ALA SER ALA LEU TRP GLU ILE SEQRES 13 B 198 GLN GLN VAL VAL ASP ALA ASP SER LYS ILE VAL GLN LEU SEQRES 14 B 198 SER GLU ILE SER MET ASP ASN SER PRO ASN LEU ALA TRP SEQRES 15 B 198 PRO LEU ILE VAL THR ALA LEU ARG ALA ASN SER ALA VAL SEQRES 16 B 198 LYS LEU GLN SEQRES 1 C 83 SER LYS MET SER ASP VAL LYS CYS THR SER VAL VAL LEU SEQRES 2 C 83 LEU SER VAL LEU GLN GLN LEU ARG VAL GLU SER SER SER SEQRES 3 C 83 LYS LEU TRP ALA GLN CYS VAL GLN LEU HIS ASN ASP ILE SEQRES 4 C 83 LEU LEU ALA LYS ASP THR THR GLU ALA PHE GLU LYS MET SEQRES 5 C 83 VAL SER LEU LEU SER VAL LEU LEU SER MET GLN GLY ALA SEQRES 6 C 83 VAL ASP ILE ASN LYS LEU CYS GLU GLU MET LEU ASP ASN SEQRES 7 C 83 ARG ALA THR LEU GLN SEQRES 1 D 198 ALA ILE ALA SER GLU PHE SER SER LEU PRO SER TYR ALA SEQRES 2 D 198 ALA PHE ALA THR ALA GLN GLU ALA TYR GLU GLN ALA VAL SEQRES 3 D 198 ALA ASN GLY ASP SER GLU VAL VAL LEU LYS LYS LEU LYS SEQRES 4 D 198 LYS SER LEU ASN VAL ALA LYS SER GLU PHE ASP ARG ASP SEQRES 5 D 198 ALA ALA MET GLN ARG LYS LEU GLU LYS MET ALA ASP GLN SEQRES 6 D 198 ALA MET THR GLN MET TYR LYS GLN ALA ARG SER GLU ASP SEQRES 7 D 198 LYS ARG ALA LYS VAL THR SER ALA MET GLN THR MET LEU SEQRES 8 D 198 PHE THR MET LEU ARG LYS LEU ASP ASN ASP ALA LEU ASN SEQRES 9 D 198 ASN ILE ILE ASN ASN ALA ARG ASP GLY CYS VAL PRO LEU SEQRES 10 D 198 ASN ILE ILE PRO LEU THR THR ALA ALA LYS LEU MET VAL SEQRES 11 D 198 VAL ILE PRO ASP TYR ASN THR TYR LYS ASN THR CYS ASP SEQRES 12 D 198 GLY THR THR PHE THR TYR ALA SER ALA LEU TRP GLU ILE SEQRES 13 D 198 GLN GLN VAL VAL ASP ALA ASP SER LYS ILE VAL GLN LEU SEQRES 14 D 198 SER GLU ILE SER MET ASP ASN SER PRO ASN LEU ALA TRP SEQRES 15 D 198 PRO LEU ILE VAL THR ALA LEU ARG ALA ASN SER ALA VAL SEQRES 16 D 198 LYS LEU GLN SEQRES 1 G 113 ASN ASN GLU LEU SER PRO VAL ALA LEU ARG GLN MET SER SEQRES 2 G 113 CYS ALA ALA GLY THR THR GLN THR ALA CYS THR ASP ASP SEQRES 3 G 113 ASN ALA LEU ALA TYR TYR ASN THR THR LYS GLY GLY ARG SEQRES 4 G 113 PHE VAL LEU ALA LEU LEU SER ASP LEU GLN ASP LEU LYS SEQRES 5 G 113 TRP ALA ARG PHE PRO LYS SER ASP GLY THR GLY THR ILE SEQRES 6 G 113 TYR THR GLU LEU GLU PRO PRO CYS ARG PHE VAL THR ASP SEQRES 7 G 113 THR PRO LYS GLY PRO LYS VAL LYS TYR LEU TYR PHE ILE SEQRES 8 G 113 LYS GLY LEU ASN ASN LEU ASN ARG GLY MET VAL LEU GLY SEQRES 9 G 113 SER LEU ALA ALA THR VAL ARG LEU GLN SEQRES 1 P 37 C G C G U A G C A U G C U SEQRES 2 P 37 A C G U C A U U C U C C A SEQRES 3 P 37 C G C G A A G C A U G SEQRES 1 T 55 C U A U C C C C A U U U U SEQRES 2 T 55 G U U G U C A U G C U U C SEQRES 3 T 55 G C G U G G A G A A U G A SEQRES 4 T 55 C G U A G C A U G C U A C SEQRES 5 T 55 G C G SEQRES 1 O 20 A U U A A A G G U U U A U SEQRES 2 O 20 A C C U U C C HET VSN A1001 42 HET MG A1002 1 HET ZN A1003 1 HET ZN A1004 1 HETNAM VSN 5'-O-[(R)-HYDROXY(THIOPHOSPHONOOXY)PHOSPHORYL]GUANOSINE HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 9 VSN C10 H15 N5 O10 P2 S FORMUL 10 MG MG 2+ FORMUL 11 ZN 2(ZN 2+) FORMUL 13 HOH *139(H2 O) HELIX 1 AA1 ALA A 2 GLY A 13 1 12 HELIX 2 AA2 VAL A 14 ALA A 16 5 3 HELIX 3 AA3 THR A 76 LYS A 91 1 16 HELIX 4 AA4 THR A 123 HIS A 133 1 11 HELIX 5 AA5 CYS A 139 TYR A 149 1 11 HELIX 6 AA6 ASP A 153 LYS A 159 5 7 HELIX 7 AA7 ASP A 170 ASN A 177 1 8 HELIX 8 AA8 LEU A 178 GLY A 200 1 23 HELIX 9 AA9 THR A 206 GLN A 210 5 5 HELIX 10 AB1 ASP A 235 THR A 248 1 14 HELIX 11 AB2 ARG A 249 ASP A 260 5 12 HELIX 12 AB3 PHE A 275 PHE A 287 1 13 HELIX 13 AB4 ASN A 297 CYS A 301 5 5 HELIX 14 AB5 ASP A 303 SER A 318 1 16 HELIX 15 AB6 THR A 319 PHE A 321 5 3 HELIX 16 AB7 PRO A 322 PHE A 326 5 5 HELIX 17 AB8 SER A 367 ASP A 377 1 11 HELIX 18 AB9 PRO A 378 SER A 384 1 7 HELIX 19 AC1 ASN A 416 LYS A 426 1 11 HELIX 20 AC2 ASN A 447 ASP A 454 1 8 HELIX 21 AC3 TYR A 455 ASN A 459 5 5 HELIX 22 AC4 ASP A 465 ASP A 477 1 13 HELIX 23 AC5 ASN A 489 VAL A 493 5 5 HELIX 24 AC6 PRO A 505 TRP A 509 5 5 HELIX 25 AC7 LYS A 511 SER A 518 1 8 HELIX 26 AC8 SER A 520 LYS A 532 1 13 HELIX 27 AC9 SER A 561 ALA A 580 1 20 HELIX 28 AD1 GLY A 596 SER A 607 1 12 HELIX 29 AD2 LYS A 621 MET A 626 1 6 HELIX 30 AD3 PRO A 627 ALA A 639 1 13 HELIX 31 AD4 ARG A 640 HIS A 642 5 3 HELIX 32 AD5 SER A 647 VAL A 662 1 16 HELIX 33 AD6 THR A 686 SER A 709 1 24 HELIX 34 AD7 LYS A 718 ARG A 733 1 16 HELIX 35 AD8 ASN A 743 HIS A 752 1 10 HELIX 36 AD9 SER A 768 GLY A 774 1 7 HELIX 37 AE1 SER A 778 ASN A 791 1 14 HELIX 38 AE2 ASP A 804 GLY A 808 5 5 HELIX 39 AE3 ASP A 833 CYS A 842 1 10 HELIX 40 AE4 ASP A 846 MET A 855 5 10 HELIX 41 AE5 ILE A 856 TYR A 867 1 12 HELIX 42 AE6 PRO A 868 HIS A 872 5 5 HELIX 43 AE7 ALA A 878 MET A 902 1 25 HELIX 44 AE8 ASN A 911 TYR A 915 5 5 HELIX 45 AE9 GLU A 917 ALA A 923 1 7 HELIX 46 AF1 MET A 924 THR A 926 5 3 HELIX 47 AF2 SER B 7 ASN B 28 1 22 HELIX 48 AF3 SER B 31 SER B 76 1 46 HELIX 49 AF4 ASP B 78 LYS B 97 1 20 HELIX 50 AF5 ASP B 101 ASN B 109 1 9 HELIX 51 AF6 ILE B 119 ALA B 125 1 7 HELIX 52 AF7 ASP B 134 CYS B 142 1 9 HELIX 53 AF8 ASN B 176 LEU B 180 5 5 HELIX 54 AF9 MET C 3 LEU C 20 1 18 HELIX 55 AG1 ARG C 21 SER C 24 5 4 HELIX 56 AG2 SER C 25 LEU C 41 1 17 HELIX 57 AG3 ASP C 44 MET C 62 1 19 HELIX 58 AG4 ASP C 67 CYS C 72 1 6 HELIX 59 AG5 LEU D 9 ALA D 25 1 17 HELIX 60 AG6 ALA D 27 VAL D 34 1 8 HELIX 61 AG7 VAL D 34 LYS D 82 1 49 HELIX 62 AG8 THR D 84 ASP D 99 1 16 HELIX 63 AG9 ASN D 100 GLY D 113 1 14 HELIX 64 AH1 ASP D 134 THR D 141 1 8 HELIX 65 AH2 ASN D 176 LEU D 180 5 5 HELIX 66 AH3 ASN G 95 VAL G 110 1 16 SHEET 1 AA1 2 ARG A 33 TYR A 38 0 SHEET 2 AA1 2 ALA A 43 PHE A 48 -1 O ALA A 46 N PHE A 35 SHEET 1 AA2 4 CYS A 54 ASP A 60 0 SHEET 2 AA2 4 ASN A 64 ARG A 74 -1 O ASN A 64 N ASP A 60 SHEET 3 AA2 4 ASP A 109 LEU A 119 -1 O ARG A 116 N VAL A 71 SHEET 4 AA2 4 HIS A 99 ILE A 106 -1 N PHE A 104 O VAL A 111 SHEET 1 AA3 3 ILE A 223 GLN A 224 0 SHEET 2 AA3 3 ILE A 201 VAL A 204 -1 N VAL A 202 O ILE A 223 SHEET 3 AA3 3 VAL A 231 VAL A 233 1 O VAL A 233 N GLY A 203 SHEET 1 AA4 4 GLY A 352 VAL A 354 0 SHEET 2 AA4 4 VAL A 338 PHE A 348 -1 N TYR A 346 O VAL A 354 SHEET 3 AA4 4 GLY A 327 VAL A 335 -1 N LEU A 329 O THR A 344 SHEET 4 AA4 4 VAL B 115 PRO B 116 -1 O VAL B 115 N VAL A 330 SHEET 1 AA510 THR A 556 GLY A 559 0 SHEET 2 AA510 ILE A 539 LEU A 544 -1 N GLN A 541 O GLY A 559 SHEET 3 AA510 MET A 666 MET A 668 1 O MET A 668 N THR A 540 SHEET 4 AA510 SER A 672 VAL A 675 -1 O TYR A 674 N VAL A 667 SHEET 5 AA510 SER A 397 ALA A 400 -1 N ALA A 399 O LEU A 673 SHEET 6 AA510 ASN A 386 ASP A 390 -1 N ASN A 386 O ALA A 400 SHEET 7 AA510 LYS B 127 ILE B 132 1 O MET B 129 N LEU A 389 SHEET 8 AA510 LEU B 184 ARG B 190 -1 O LEU B 184 N ILE B 132 SHEET 9 AA510 LEU B 153 VAL B 160 -1 N VAL B 160 O ILE B 185 SHEET 10 AA510 THR B 146 THR B 148 -1 N PHE B 147 O TRP B 154 SHEET 1 AA6 2 ASN A 414 PHE A 415 0 SHEET 2 AA6 2 PHE A 843 VAL A 844 -1 O VAL A 844 N ASN A 414 SHEET 1 AA7 4 PHE A 753 LEU A 758 0 SHEET 2 AA7 4 ASP A 761 ASN A 767 -1 O CYS A 765 N SER A 754 SHEET 3 AA7 4 PRO A 612 GLY A 616 -1 N MET A 615 O VAL A 764 SHEET 4 AA7 4 TRP A 800 GLU A 802 -1 O GLU A 802 N LEU A 614 SHEET 1 AA8 2 HIS A 816 GLN A 822 0 SHEET 2 AA8 2 ASP A 825 TYR A 831 -1 O ASP A 825 N GLN A 822 SHEET 1 AA9 5 LYS D 127 ILE D 132 0 SHEET 2 AA9 5 LEU D 184 ARG D 190 -1 O LEU D 184 N ILE D 132 SHEET 3 AA9 5 ALA D 152 VAL D 160 -1 N VAL D 160 O ILE D 185 SHEET 4 AA9 5 THR D 146 TYR D 149 -1 N PHE D 147 O TRP D 154 SHEET 5 AA9 5 CYS D 142 ASP D 143 -1 N ASP D 143 O THR D 146 SHEET 1 AB1 7 THR G 64 GLU G 68 0 SHEET 2 AB1 7 TRP G 53 PRO G 57 -1 N PHE G 56 O ILE G 65 SHEET 3 AB1 7 ARG G 10 GLY G 17 -1 N GLY G 17 O TRP G 53 SHEET 4 AB1 7 ALA G 28 ASN G 33 -1 O ALA G 30 N MET G 12 SHEET 5 AB1 7 PHE G 40 SER G 46 -1 O LEU G 42 N TYR G 31 SHEET 6 AB1 7 VAL G 85 PHE G 90 -1 O TYR G 89 N LEU G 44 SHEET 7 AB1 7 CYS G 73 VAL G 76 -1 N PHE G 75 O LYS G 86 LINK N ASN G 1 P A O 1 1555 1555 1.60 LINK OD2 ASP A 208 MG MG A1002 1555 1555 2.90 LINK OD1 ASN A 209 MG MG A1002 1555 1555 2.32 LINK ND1 HIS A 295 ZN ZN A1003 1555 1555 2.31 LINK SG CYS A 301 ZN ZN A1003 1555 1555 2.32 LINK SG CYS A 306 ZN ZN A1003 1555 1555 2.34 LINK SG CYS A 310 ZN ZN A1003 1555 1555 2.33 LINK SG CYS A 487 ZN ZN A1004 1555 1555 2.29 LINK ND1 HIS A 642 ZN ZN A1004 1555 1555 2.19 LINK SG CYS A 645 ZN ZN A1004 1555 1555 2.32 LINK SG CYS A 646 ZN ZN A1004 1555 1555 2.34 LINK MG MG A1002 OP1 A O 1 1555 1555 2.48 LINK ZN ZN A1003 O HOH A1159 1555 1555 1.83 CISPEP 1 PHE A 504 PRO A 505 0 -0.29 CISPEP 2 TRP B 182 PRO B 183 0 -0.20 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000