HEADER TRANSCRIPTION 17-MAY-23 8SVP TITLE CRYSTAL STRUCTURE OF PREGNANE X RECEPTOR LIGAND BINDING DOMAIN IN TITLE 2 COMPLEX WITH SJPYT-278 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PREGNANE X RECEPTOR LIGAND BINDING DOMAIN FUSED TO SRC-1 COMPND 3 COACTIVATOR PEPTIDE; COMPND 4 CHAIN: A, B; COMPND 5 EC: 2.3.1.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NR1I2, PXR, NCOA1, BHLHE74, SRC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-3A KEYWDS PREGNANE X RECEPTOR (PXR), PROMISCUOUS LIGAND-ACTIVATED PROTEIN, KEYWDS 2 NUCLEAR RECEPTOR SUBFAMILY 1, TRANSCRIPTIONAL REGULATOR, AND DRUG KEYWDS 3 METABOLISM., TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR E.GARCIA-MALDONADO,A.D.HUBER,S.NITHIANANTHAM,D.J.MILLER,T.CHEN REVDAT 2 29-MAY-24 8SVP 1 JRNL REVDAT 1 15-MAY-24 8SVP 0 JRNL AUTH E.GARCIA-MALDONADO,A.D.HUBER,S.C.CHAI,S.NITHIANANTHAM,Y.LI, JRNL AUTH 2 J.WU,S.POUDEL,D.J.MILLER,J.SEETHARAMAN,T.CHEN JRNL TITL CHEMICAL MANIPULATION OF AN ACTIVATION/INHIBITION SWITCH IN JRNL TITL 2 THE NUCLEAR RECEPTOR PXR. JRNL REF NAT COMMUN V. 15 4054 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38744881 JRNL DOI 10.1038/S41467-024-48472-1 REMARK 2 REMARK 2 RESOLUTION. 3.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.29 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 12057 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 611 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2900 - 5.2700 0.99 2981 155 0.2156 0.2514 REMARK 3 2 5.2600 - 4.1800 1.00 2853 155 0.2006 0.2423 REMARK 3 3 4.1800 - 3.6600 0.99 2811 168 0.2279 0.2621 REMARK 3 4 3.6600 - 3.3200 0.98 2801 133 0.2567 0.2593 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.360 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 4500 REMARK 3 ANGLE : 0.437 6093 REMARK 3 CHIRALITY : 0.033 673 REMARK 3 PLANARITY : 0.004 764 REMARK 3 DIHEDRAL : 12.978 1603 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274551. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.920 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12094 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.320 REMARK 200 RESOLUTION RANGE LOW (A) : 29.290 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.14000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.59 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 0.57300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: RECTANGULAR SHAPED CRYSTAL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM BIS-TRIS PH 6.0-7.0, 9-16% (V/V) REMARK 280 2-METHYL-2,4-PENTANEDIOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.52050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.13700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.67450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.13700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.52050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.67450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 HIS A 127 REMARK 465 HIS A 128 REMARK 465 GLY A 129 REMARK 465 SER A 130 REMARK 465 GLU A 131 REMARK 465 ARG A 132 REMARK 465 THR A 133 REMARK 465 GLY A 134 REMARK 465 THR A 135 REMARK 465 GLN A 136 REMARK 465 PRO A 137 REMARK 465 LEU A 138 REMARK 465 GLY A 139 REMARK 465 VAL A 140 REMARK 465 GLN A 141 REMARK 465 VAL A 177 REMARK 465 LEU A 178 REMARK 465 SER A 179 REMARK 465 SER A 180 REMARK 465 GLY A 181 REMARK 465 CYS A 182 REMARK 465 GLU A 183 REMARK 465 LEU A 184 REMARK 465 PRO A 185 REMARK 465 GLU A 186 REMARK 465 SER A 187 REMARK 465 LEU A 188 REMARK 465 GLN A 189 REMARK 465 ALA A 190 REMARK 465 PRO A 191 REMARK 465 SER A 192 REMARK 465 ARG A 193 REMARK 465 GLU A 194 REMARK 465 GLU A 195 REMARK 465 ALA A 196 REMARK 465 ALA A 197 REMARK 465 SER A 231 REMARK 465 GLY A 232 REMARK 465 GLY A 233 REMARK 465 THR A 311 REMARK 465 ALA A 312 REMARK 465 GLY A 313 REMARK 465 GLY A 314 REMARK 465 PHE A 315 REMARK 465 GLN A 316 REMARK 465 GLN A 317 REMARK 465 LEU A 318 REMARK 465 THR A 432 REMARK 465 GLY A 433 REMARK 465 SER A 434 REMARK 465 SER A 435 REMARK 465 GLY A 436 REMARK 465 GLY A 437 REMARK 465 SER A 438 REMARK 465 GLY A 439 REMARK 465 GLY A 440 REMARK 465 SER A 441 REMARK 465 SER A 442 REMARK 465 HIS A 443 REMARK 465 SER A 444 REMARK 465 GLY A 460 REMARK 465 SER A 461 REMARK 465 PRO A 462 REMARK 465 SER A 463 REMARK 465 ASP A 464 REMARK 465 ILE A 465 REMARK 465 THR A 466 REMARK 465 THR A 467 REMARK 465 LEU A 468 REMARK 465 SER A 469 REMARK 465 VAL A 470 REMARK 465 GLU A 471 REMARK 465 PRO A 472 REMARK 465 ASP A 473 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 465 HIS B 127 REMARK 465 HIS B 128 REMARK 465 GLY B 129 REMARK 465 SER B 130 REMARK 465 GLU B 131 REMARK 465 ARG B 132 REMARK 465 THR B 133 REMARK 465 GLY B 134 REMARK 465 THR B 135 REMARK 465 GLN B 136 REMARK 465 PRO B 137 REMARK 465 LEU B 138 REMARK 465 GLY B 139 REMARK 465 VAL B 140 REMARK 465 GLN B 141 REMARK 465 LEU B 178 REMARK 465 SER B 179 REMARK 465 SER B 180 REMARK 465 GLY B 181 REMARK 465 CYS B 182 REMARK 465 GLU B 183 REMARK 465 LEU B 184 REMARK 465 PRO B 185 REMARK 465 GLU B 186 REMARK 465 SER B 187 REMARK 465 LEU B 188 REMARK 465 GLN B 189 REMARK 465 ALA B 190 REMARK 465 PRO B 191 REMARK 465 SER B 192 REMARK 465 ARG B 193 REMARK 465 GLU B 194 REMARK 465 GLU B 195 REMARK 465 ALA B 196 REMARK 465 ALA B 197 REMARK 465 LYS B 198 REMARK 465 TRP B 199 REMARK 465 SER B 200 REMARK 465 GLN B 201 REMARK 465 VAL B 202 REMARK 465 ARG B 203 REMARK 465 LYS B 204 REMARK 465 ASP B 205 REMARK 465 GLY B 232 REMARK 465 GLY B 233 REMARK 465 LYS B 234 REMARK 465 GLU B 235 REMARK 465 ASP B 310 REMARK 465 THR B 311 REMARK 465 ALA B 312 REMARK 465 GLY B 313 REMARK 465 GLY B 314 REMARK 465 PHE B 315 REMARK 465 GLN B 316 REMARK 465 THR B 432 REMARK 465 GLY B 433 REMARK 465 SER B 434 REMARK 465 SER B 435 REMARK 465 GLY B 436 REMARK 465 GLY B 437 REMARK 465 SER B 438 REMARK 465 GLY B 439 REMARK 465 GLY B 440 REMARK 465 SER B 441 REMARK 465 SER B 442 REMARK 465 HIS B 443 REMARK 465 SER B 444 REMARK 465 PRO B 462 REMARK 465 SER B 463 REMARK 465 ASP B 464 REMARK 465 ILE B 465 REMARK 465 THR B 466 REMARK 465 THR B 467 REMARK 465 LEU B 468 REMARK 465 SER B 469 REMARK 465 VAL B 470 REMARK 465 GLU B 471 REMARK 465 PRO B 472 REMARK 465 ASP B 473 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 159 CE REMARK 470 LYS A 170 CG CD CE NZ REMARK 470 LYS A 198 CG CD CE NZ REMARK 470 TRP A 199 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 199 CZ3 CH2 REMARK 470 GLN A 201 CG CD OE1 NE2 REMARK 470 VAL A 202 CG1 CG2 REMARK 470 ARG A 203 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 204 CG CD CE NZ REMARK 470 ASP A 205 CG OD1 OD2 REMARK 470 LYS A 210 CG CD CE NZ REMARK 470 LYS A 226 CG CD CE NZ REMARK 470 ASP A 230 CG OD1 OD2 REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 GLU A 235 CG CD OE1 OE2 REMARK 470 PHE A 237 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 270 CG CD OE1 OE2 REMARK 470 GLU A 309 CG CD OE1 OE2 REMARK 470 ASP A 310 CG OD1 OD2 REMARK 470 LEU A 319 CG CD1 CD2 REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 ARG A 360 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 374 CG CD CE NZ REMARK 470 GLN A 383 CG CD OE1 NE2 REMARK 470 GLU A 448 CG CD OE1 OE2 REMARK 470 LYS A 451 CG CD CE NZ REMARK 470 GLU B 145 CG CD OE1 OE2 REMARK 470 GLU B 146 CG CD OE1 OE2 REMARK 470 LYS B 170 CG CD CE NZ REMARK 470 LEU B 206 CG CD1 CD2 REMARK 470 CYS B 207 SG REMARK 470 LYS B 210 CG CD CE NZ REMARK 470 LYS B 226 CG CD CE NZ REMARK 470 ASP B 230 CG OD1 OD2 REMARK 470 SER B 231 OG REMARK 470 ILE B 236 CG1 CG2 CD1 REMARK 470 PHE B 237 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 265 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 309 CG CD OE1 OE2 REMARK 470 GLN B 317 CG CD OE1 NE2 REMARK 470 LEU B 318 CG CD1 CD2 REMARK 470 LEU B 320 CG CD1 CD2 REMARK 470 LYS B 325 CG CD CE NZ REMARK 470 GLN B 364 CG CD OE1 NE2 REMARK 470 ARG B 410 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 413 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 448 CG CD OE1 OE2 REMARK 470 LYS B 451 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 209 44.90 -109.91 REMARK 500 CYS A 301 43.91 -96.54 REMARK 500 GLU A 309 -87.54 -121.71 REMARK 500 ASP A 352 32.09 -94.39 REMARK 500 HIS A 386 41.89 -108.50 REMARK 500 ALA B 229 -158.36 -93.77 REMARK 500 CYS B 301 37.87 -90.74 REMARK 500 LEU B 319 43.29 -82.22 REMARK 500 ASP B 352 30.08 -90.88 REMARK 500 REMARK 500 REMARK: NULL DBREF 8SVP A 130 434 UNP O75469 NR1I2_HUMAN 130 434 DBREF 8SVP A 441 473 UNP Q15788 NCOA1_HUMAN 678 710 DBREF 8SVP B 130 434 UNP O75469 NR1I2_HUMAN 130 434 DBREF 8SVP B 441 473 UNP Q15788 NCOA1_HUMAN 678 710 SEQADV 8SVP HIS A 123 UNP O75469 EXPRESSION TAG SEQADV 8SVP HIS A 124 UNP O75469 EXPRESSION TAG SEQADV 8SVP HIS A 125 UNP O75469 EXPRESSION TAG SEQADV 8SVP HIS A 126 UNP O75469 EXPRESSION TAG SEQADV 8SVP HIS A 127 UNP O75469 EXPRESSION TAG SEQADV 8SVP HIS A 128 UNP O75469 EXPRESSION TAG SEQADV 8SVP GLY A 129 UNP O75469 EXPRESSION TAG SEQADV 8SVP SER A 435 UNP O75469 LINKER SEQADV 8SVP GLY A 436 UNP O75469 LINKER SEQADV 8SVP GLY A 437 UNP O75469 LINKER SEQADV 8SVP SER A 438 UNP O75469 LINKER SEQADV 8SVP GLY A 439 UNP O75469 LINKER SEQADV 8SVP GLY A 440 UNP O75469 LINKER SEQADV 8SVP HIS B 123 UNP O75469 EXPRESSION TAG SEQADV 8SVP HIS B 124 UNP O75469 EXPRESSION TAG SEQADV 8SVP HIS B 125 UNP O75469 EXPRESSION TAG SEQADV 8SVP HIS B 126 UNP O75469 EXPRESSION TAG SEQADV 8SVP HIS B 127 UNP O75469 EXPRESSION TAG SEQADV 8SVP HIS B 128 UNP O75469 EXPRESSION TAG SEQADV 8SVP GLY B 129 UNP O75469 EXPRESSION TAG SEQADV 8SVP SER B 435 UNP O75469 LINKER SEQADV 8SVP GLY B 436 UNP O75469 LINKER SEQADV 8SVP GLY B 437 UNP O75469 LINKER SEQADV 8SVP SER B 438 UNP O75469 LINKER SEQADV 8SVP GLY B 439 UNP O75469 LINKER SEQADV 8SVP GLY B 440 UNP O75469 LINKER SEQRES 1 A 351 HIS HIS HIS HIS HIS HIS GLY SER GLU ARG THR GLY THR SEQRES 2 A 351 GLN PRO LEU GLY VAL GLN GLY LEU THR GLU GLU GLN ARG SEQRES 3 A 351 MET MET ILE ARG GLU LEU MET ASP ALA GLN MET LYS THR SEQRES 4 A 351 PHE ASP THR THR PHE SER HIS PHE LYS ASN PHE ARG LEU SEQRES 5 A 351 PRO GLY VAL LEU SER SER GLY CYS GLU LEU PRO GLU SER SEQRES 6 A 351 LEU GLN ALA PRO SER ARG GLU GLU ALA ALA LYS TRP SER SEQRES 7 A 351 GLN VAL ARG LYS ASP LEU CYS SER LEU LYS VAL SER LEU SEQRES 8 A 351 GLN LEU ARG GLY GLU ASP GLY SER VAL TRP ASN TYR LYS SEQRES 9 A 351 PRO PRO ALA ASP SER GLY GLY LYS GLU ILE PHE SER LEU SEQRES 10 A 351 LEU PRO HIS MET ALA ASP MET SER THR TYR MET PHE LYS SEQRES 11 A 351 GLY ILE ILE SER PHE ALA LYS VAL ILE SER TYR PHE ARG SEQRES 12 A 351 ASP LEU PRO ILE GLU ASP GLN ILE SER LEU LEU LYS GLY SEQRES 13 A 351 ALA ALA PHE GLU LEU CYS GLN LEU ARG PHE ASN THR VAL SEQRES 14 A 351 PHE ASN ALA GLU THR GLY THR TRP GLU CYS GLY ARG LEU SEQRES 15 A 351 SER TYR CYS LEU GLU ASP THR ALA GLY GLY PHE GLN GLN SEQRES 16 A 351 LEU LEU LEU GLU PRO MET LEU LYS PHE HIS TYR MET LEU SEQRES 17 A 351 LYS LYS LEU GLN LEU HIS GLU GLU GLU TYR VAL LEU MET SEQRES 18 A 351 GLN ALA ILE SER LEU PHE SER PRO ASP ARG PRO GLY VAL SEQRES 19 A 351 LEU GLN HIS ARG VAL VAL ASP GLN LEU GLN GLU GLN PHE SEQRES 20 A 351 ALA ILE THR LEU LYS SER TYR ILE GLU CYS ASN ARG PRO SEQRES 21 A 351 GLN PRO ALA HIS ARG PHE LEU PHE LEU LYS ILE MET ALA SEQRES 22 A 351 MET LEU THR GLU LEU ARG SER ILE ASN ALA GLN HIS THR SEQRES 23 A 351 GLN ARG LEU LEU ARG ILE GLN ASP ILE HIS PRO PHE ALA SEQRES 24 A 351 THR PRO LEU MET GLN GLU LEU PHE GLY ILE THR GLY SER SEQRES 25 A 351 SER GLY GLY SER GLY GLY SER SER HIS SER SER LEU THR SEQRES 26 A 351 GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SEQRES 27 A 351 SER PRO SER ASP ILE THR THR LEU SER VAL GLU PRO ASP SEQRES 1 B 351 HIS HIS HIS HIS HIS HIS GLY SER GLU ARG THR GLY THR SEQRES 2 B 351 GLN PRO LEU GLY VAL GLN GLY LEU THR GLU GLU GLN ARG SEQRES 3 B 351 MET MET ILE ARG GLU LEU MET ASP ALA GLN MET LYS THR SEQRES 4 B 351 PHE ASP THR THR PHE SER HIS PHE LYS ASN PHE ARG LEU SEQRES 5 B 351 PRO GLY VAL LEU SER SER GLY CYS GLU LEU PRO GLU SER SEQRES 6 B 351 LEU GLN ALA PRO SER ARG GLU GLU ALA ALA LYS TRP SER SEQRES 7 B 351 GLN VAL ARG LYS ASP LEU CYS SER LEU LYS VAL SER LEU SEQRES 8 B 351 GLN LEU ARG GLY GLU ASP GLY SER VAL TRP ASN TYR LYS SEQRES 9 B 351 PRO PRO ALA ASP SER GLY GLY LYS GLU ILE PHE SER LEU SEQRES 10 B 351 LEU PRO HIS MET ALA ASP MET SER THR TYR MET PHE LYS SEQRES 11 B 351 GLY ILE ILE SER PHE ALA LYS VAL ILE SER TYR PHE ARG SEQRES 12 B 351 ASP LEU PRO ILE GLU ASP GLN ILE SER LEU LEU LYS GLY SEQRES 13 B 351 ALA ALA PHE GLU LEU CYS GLN LEU ARG PHE ASN THR VAL SEQRES 14 B 351 PHE ASN ALA GLU THR GLY THR TRP GLU CYS GLY ARG LEU SEQRES 15 B 351 SER TYR CYS LEU GLU ASP THR ALA GLY GLY PHE GLN GLN SEQRES 16 B 351 LEU LEU LEU GLU PRO MET LEU LYS PHE HIS TYR MET LEU SEQRES 17 B 351 LYS LYS LEU GLN LEU HIS GLU GLU GLU TYR VAL LEU MET SEQRES 18 B 351 GLN ALA ILE SER LEU PHE SER PRO ASP ARG PRO GLY VAL SEQRES 19 B 351 LEU GLN HIS ARG VAL VAL ASP GLN LEU GLN GLU GLN PHE SEQRES 20 B 351 ALA ILE THR LEU LYS SER TYR ILE GLU CYS ASN ARG PRO SEQRES 21 B 351 GLN PRO ALA HIS ARG PHE LEU PHE LEU LYS ILE MET ALA SEQRES 22 B 351 MET LEU THR GLU LEU ARG SER ILE ASN ALA GLN HIS THR SEQRES 23 B 351 GLN ARG LEU LEU ARG ILE GLN ASP ILE HIS PRO PHE ALA SEQRES 24 B 351 THR PRO LEU MET GLN GLU LEU PHE GLY ILE THR GLY SER SEQRES 25 B 351 SER GLY GLY SER GLY GLY SER SER HIS SER SER LEU THR SEQRES 26 B 351 GLU ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SEQRES 27 B 351 SER PRO SER ASP ILE THR THR LEU SER VAL GLU PRO ASP HET WSX A 501 36 HET YGO A 502 36 HET WSX B 501 36 HET YGO B 502 36 HETNAM WSX (1P)-N-(5-TERT-BUTYL-2-{[(3S)-HEXAN-3-YL]OXY}PHENYL)-1- HETNAM 2 WSX (2,5-DIMETHOXYPHENYL)-5-METHYL-1H-1,2,3-TRIAZOLE-4- HETNAM 3 WSX CARBOXAMIDE HETNAM YGO (1P)-N-(5-TERT-BUTYL-2-{[(3R)-HEXAN-3-YL]OXY}PHENYL)-1- HETNAM 2 YGO (2,5-DIMETHOXYPHENYL)-5-METHYL-1H-1,2,3-TRIAZOLE-4- HETNAM 3 YGO CARBOXAMIDE FORMUL 3 WSX 2(C28 H38 N4 O4) FORMUL 4 YGO 2(C28 H38 N4 O4) FORMUL 7 HOH *6(H2 O) HELIX 1 AA1 THR A 144 PHE A 162 1 19 HELIX 2 AA2 VAL A 202 LEU A 209 1 8 HELIX 3 AA3 SER A 238 ILE A 261 1 24 HELIX 4 AA4 ILE A 261 ASP A 266 1 6 HELIX 5 AA5 PRO A 268 ALA A 279 1 12 HELIX 6 AA6 ALA A 279 VAL A 291 1 13 HELIX 7 AA7 GLU A 321 LEU A 333 1 13 HELIX 8 AA8 HIS A 336 PHE A 349 1 14 HELIX 9 AA9 GLN A 358 ARG A 381 1 24 HELIX 10 AB1 PHE A 388 HIS A 418 1 31 HELIX 11 AB2 THR A 422 GLY A 430 1 9 HELIX 12 AB3 HIS A 450 GLU A 459 1 10 HELIX 13 AB4 THR B 144 PHE B 162 1 19 HELIX 14 AB5 LEU B 239 VAL B 260 1 22 HELIX 15 AB6 ILE B 261 ASP B 266 1 6 HELIX 16 AB7 PRO B 268 ALA B 279 1 12 HELIX 17 AB8 ALA B 279 VAL B 291 1 13 HELIX 18 AB9 GLU B 321 LEU B 333 1 13 HELIX 19 AC1 HIS B 336 PHE B 349 1 14 HELIX 20 AC2 GLN B 358 ARG B 381 1 24 HELIX 21 AC3 GLN B 383 ARG B 387 5 5 HELIX 22 AC4 PHE B 388 HIS B 418 1 31 HELIX 23 AC5 THR B 422 GLY B 430 1 9 HELIX 24 AC6 HIS B 450 LEU B 457 1 8 SHEET 1 AA110 PHE A 292 ASN A 293 0 SHEET 2 AA110 THR A 298 CYS A 301 -1 O THR A 298 N ASN A 293 SHEET 3 AA110 LEU A 304 LEU A 308 -1 O TYR A 306 N TRP A 299 SHEET 4 AA110 VAL A 211 ARG A 216 -1 N SER A 212 O CYS A 307 SHEET 5 AA110 VAL A 222 LYS A 226 -1 O TYR A 225 N LEU A 213 SHEET 6 AA110 VAL B 222 LYS B 226 -1 O VAL B 222 N LYS A 226 SHEET 7 AA110 VAL B 211 ARG B 216 -1 N LEU B 213 O TYR B 225 SHEET 8 AA110 LEU B 304 LEU B 308 -1 O CYS B 307 N SER B 212 SHEET 9 AA110 THR B 298 CYS B 301 -1 N TRP B 299 O TYR B 306 SHEET 10 AA110 PHE B 292 ASN B 293 -1 N ASN B 293 O THR B 298 CRYST1 85.041 87.349 106.274 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011759 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009410 0.00000