HEADER HYDROLASE/RNA 18-MAY-23 8SWC TITLE RNASE H COMPLEX WITH ASO (OOO) AND RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEASE H1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNASE H1,RIBONUCLEASE H TYPE II; COMPND 5 EC: 3.1.26.4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RNA (5'- COMPND 9 R(*UP*GP*GP*CP*GP*AP*GP*UP*GP*GP*GP*UP*GP*AP*GP*UP*GP*AP*GP*G)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: PO ASO; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RNASEH1, RNH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 16 ORGANISM_COMMON: HUMAN; SOURCE 17 ORGANISM_TAXID: 9606 KEYWDS COMPLEX OF DNA(ASO) AND RNA OOO STEREOCHEMISTRY (PO-BACKBONE) RNASE KEYWDS 2 H, HYDROLASE-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.-J.CHO,N.IWAMOTO REVDAT 1 19-JUN-24 8SWC 0 JRNL AUTH N.IWAMOTO,Y.-J.CHO JRNL TITL CRYSTAL STRUCTURE OF RNASE H/RNA/PO-ASO COMPLEX AT AN ATOMIC JRNL TITL 2 LEVEL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 13752 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.240 REMARK 3 FREE R VALUE TEST SET COUNT : 720 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4800 - 4.5800 1.00 2717 137 0.1502 0.1752 REMARK 3 2 4.5800 - 3.6400 1.00 2621 156 0.1846 0.1972 REMARK 3 3 3.6400 - 3.1800 1.00 2552 166 0.2315 0.2718 REMARK 3 4 3.1800 - 2.8900 1.00 2594 130 0.2839 0.3541 REMARK 3 5 2.8900 - 2.6800 0.99 2548 131 0.3025 0.3511 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.442 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.449 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 75.44 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 2164 REMARK 3 ANGLE : 0.649 3104 REMARK 3 CHIRALITY : 0.037 344 REMARK 3 PLANARITY : 0.002 253 REMARK 3 DIHEDRAL : 19.903 570 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -63.4971 11.7959 1.2729 REMARK 3 T TENSOR REMARK 3 T11: 0.7800 T22: 0.6916 REMARK 3 T33: 0.5926 T12: -0.1766 REMARK 3 T13: -0.0341 T23: -0.0748 REMARK 3 L TENSOR REMARK 3 L11: 3.1799 L22: 5.5438 REMARK 3 L33: 4.5220 L12: 2.7611 REMARK 3 L13: -0.1505 L23: -3.9401 REMARK 3 S TENSOR REMARK 3 S11: 0.0930 S12: -1.3132 S13: -0.5926 REMARK 3 S21: 0.6679 S22: -0.1581 S23: 0.5569 REMARK 3 S31: 0.1634 S32: -0.3652 S33: 0.0350 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): -49.5551 9.1551 -8.8673 REMARK 3 T TENSOR REMARK 3 T11: 0.8817 T22: 0.5828 REMARK 3 T33: 0.7161 T12: 0.0728 REMARK 3 T13: -0.0179 T23: 0.0960 REMARK 3 L TENSOR REMARK 3 L11: 6.2851 L22: 5.8948 REMARK 3 L33: 5.9942 L12: 1.3683 REMARK 3 L13: -1.0357 L23: 2.2169 REMARK 3 S TENSOR REMARK 3 S11: -0.1969 S12: -0.1869 S13: -0.6917 REMARK 3 S21: 0.2082 S22: -0.2000 S23: -0.7261 REMARK 3 S31: 0.4373 S32: 0.4539 S33: 0.4610 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 164 THROUGH 199 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.2907 13.0223 -6.7403 REMARK 3 T TENSOR REMARK 3 T11: 0.6467 T22: 0.5723 REMARK 3 T33: 0.6521 T12: -0.1380 REMARK 3 T13: -0.0907 T23: 0.0317 REMARK 3 L TENSOR REMARK 3 L11: 4.3802 L22: 4.5345 REMARK 3 L33: 6.5575 L12: -4.2157 REMARK 3 L13: -0.5972 L23: 2.2579 REMARK 3 S TENSOR REMARK 3 S11: 0.6170 S12: 0.1609 S13: -0.4548 REMARK 3 S21: -0.0918 S22: -0.4111 S23: 0.7441 REMARK 3 S31: 0.2483 S32: -0.7965 S33: -0.0678 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 200 THROUGH 238 ) REMARK 3 ORIGIN FOR THE GROUP (A): -58.1293 26.0597 0.8016 REMARK 3 T TENSOR REMARK 3 T11: 0.6555 T22: 0.6626 REMARK 3 T33: 0.4817 T12: 0.0077 REMARK 3 T13: 0.0632 T23: -0.0258 REMARK 3 L TENSOR REMARK 3 L11: 7.0994 L22: 7.8352 REMARK 3 L33: 5.4061 L12: 4.0774 REMARK 3 L13: -1.1495 L23: -1.3495 REMARK 3 S TENSOR REMARK 3 S11: 0.1150 S12: -0.3022 S13: 0.3185 REMARK 3 S21: 0.3610 S22: -0.1151 S23: 0.3519 REMARK 3 S31: -0.6232 S32: -0.4338 S33: 0.0803 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 239 THROUGH 260 ) REMARK 3 ORIGIN FOR THE GROUP (A): -62.5235 24.1237 -2.0015 REMARK 3 T TENSOR REMARK 3 T11: 0.5950 T22: 0.6176 REMARK 3 T33: 0.6774 T12: -0.0267 REMARK 3 T13: 0.0228 T23: -0.0391 REMARK 3 L TENSOR REMARK 3 L11: 6.4773 L22: 6.6412 REMARK 3 L33: 8.4892 L12: 2.1852 REMARK 3 L13: 1.0381 L23: -1.1032 REMARK 3 S TENSOR REMARK 3 S11: -0.0949 S12: -0.3474 S13: 0.3325 REMARK 3 S21: -0.2294 S22: 0.0554 S23: 0.7189 REMARK 3 S31: 0.0178 S32: -1.3583 S33: 0.0700 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 261 THROUGH 267 ) REMARK 3 ORIGIN FOR THE GROUP (A): -56.6927 7.0090 9.7494 REMARK 3 T TENSOR REMARK 3 T11: 0.8995 T22: 0.9749 REMARK 3 T33: 1.3056 T12: -0.0943 REMARK 3 T13: 0.1342 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.0989 L22: 1.2909 REMARK 3 L33: 4.4852 L12: -0.1291 REMARK 3 L13: -0.5893 L23: -0.1626 REMARK 3 S TENSOR REMARK 3 S11: 0.8400 S12: 0.7640 S13: 2.3775 REMARK 3 S21: -0.0649 S22: 0.5850 S23: 1.6116 REMARK 3 S31: 1.7930 S32: 0.9458 S33: -1.2392 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 268 THROUGH 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.7729 4.0262 -5.4607 REMARK 3 T TENSOR REMARK 3 T11: 0.9779 T22: 0.7315 REMARK 3 T33: 0.7801 T12: -0.2226 REMARK 3 T13: -0.1275 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 5.9523 L22: 6.4355 REMARK 3 L33: 8.4101 L12: -2.3271 REMARK 3 L13: -6.5264 L23: 0.9417 REMARK 3 S TENSOR REMARK 3 S11: -0.3898 S12: -0.3932 S13: -0.5712 REMARK 3 S21: -0.0742 S22: -0.2603 S23: 0.6721 REMARK 3 S31: 1.5356 S32: 0.3451 S33: 0.4271 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SWC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274601. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13859 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.670 REMARK 200 RESOLUTION RANGE LOW (A) : 43.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 19.70 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2QK9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2:1 COMPLEX : PRECIPITANT (0.1 M REMARK 280 SODIUM ACETATE, PH 4.6, 8% W/V PEG4000), CRYOPROTECTION: MOTHER REMARK 280 LIQUOR + 25% V/V GLYCEROL, 1 MINUTE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 27.36400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 54.72800 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 54.72800 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 27.36400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 TRP A 3 REMARK 465 LEU A 4 REMARK 465 LEU A 5 REMARK 465 PHE A 6 REMARK 465 LEU A 7 REMARK 465 ALA A 8 REMARK 465 HIS A 9 REMARK 465 ARG A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 LEU A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 PRO A 17 REMARK 465 CYS A 18 REMARK 465 ARG A 19 REMARK 465 ARG A 20 REMARK 465 GLY A 21 REMARK 465 SER A 22 REMARK 465 ARG A 23 REMARK 465 GLY A 24 REMARK 465 PHE A 25 REMARK 465 GLY A 26 REMARK 465 MET A 27 REMARK 465 PHE A 28 REMARK 465 TYR A 29 REMARK 465 ALA A 30 REMARK 465 VAL A 31 REMARK 465 ARG A 32 REMARK 465 ARG A 33 REMARK 465 GLY A 34 REMARK 465 ARG A 35 REMARK 465 LYS A 36 REMARK 465 THR A 37 REMARK 465 GLY A 38 REMARK 465 VAL A 39 REMARK 465 PHE A 40 REMARK 465 LEU A 41 REMARK 465 THR A 42 REMARK 465 TRP A 43 REMARK 465 ASN A 44 REMARK 465 GLU A 45 REMARK 465 CYS A 46 REMARK 465 ARG A 47 REMARK 465 ALA A 48 REMARK 465 GLN A 49 REMARK 465 VAL A 50 REMARK 465 ASP A 51 REMARK 465 ARG A 52 REMARK 465 PHE A 53 REMARK 465 PRO A 54 REMARK 465 ALA A 55 REMARK 465 ALA A 56 REMARK 465 ARG A 57 REMARK 465 PHE A 58 REMARK 465 LYS A 59 REMARK 465 LYS A 60 REMARK 465 PHE A 61 REMARK 465 ALA A 62 REMARK 465 THR A 63 REMARK 465 GLU A 64 REMARK 465 ASP A 65 REMARK 465 GLU A 66 REMARK 465 ALA A 67 REMARK 465 TRP A 68 REMARK 465 ALA A 69 REMARK 465 PHE A 70 REMARK 465 VAL A 71 REMARK 465 ARG A 72 REMARK 465 LYS A 73 REMARK 465 SER A 74 REMARK 465 ALA A 75 REMARK 465 SER A 76 REMARK 465 PRO A 77 REMARK 465 GLU A 78 REMARK 465 VAL A 79 REMARK 465 SER A 80 REMARK 465 GLU A 81 REMARK 465 GLY A 82 REMARK 465 HIS A 83 REMARK 465 GLU A 84 REMARK 465 ASN A 85 REMARK 465 GLN A 86 REMARK 465 HIS A 87 REMARK 465 GLY A 88 REMARK 465 GLN A 89 REMARK 465 GLU A 90 REMARK 465 SER A 91 REMARK 465 GLU A 92 REMARK 465 ALA A 93 REMARK 465 LYS A 94 REMARK 465 ALA A 95 REMARK 465 SER A 96 REMARK 465 LYS A 97 REMARK 465 ARG A 98 REMARK 465 LEU A 99 REMARK 465 ARG A 100 REMARK 465 GLU A 101 REMARK 465 PRO A 102 REMARK 465 LEU A 103 REMARK 465 ASP A 104 REMARK 465 GLY A 105 REMARK 465 ASP A 106 REMARK 465 GLY A 107 REMARK 465 HIS A 108 REMARK 465 GLU A 109 REMARK 465 SER A 110 REMARK 465 ALA A 111 REMARK 465 GLU A 112 REMARK 465 PRO A 113 REMARK 465 TYR A 114 REMARK 465 ALA A 115 REMARK 465 LYS A 116 REMARK 465 HIS A 117 REMARK 465 MET A 118 REMARK 465 LYS A 119 REMARK 465 PRO A 120 REMARK 465 SER A 121 REMARK 465 VAL A 122 REMARK 465 GLU A 123 REMARK 465 PRO A 124 REMARK 465 ALA A 125 REMARK 465 PRO A 126 REMARK 465 PRO A 127 REMARK 465 VAL A 128 REMARK 465 SER A 129 REMARK 465 ARG A 130 REMARK 465 ASP A 131 REMARK 465 THR A 132 REMARK 465 PHE A 133 REMARK 465 SER A 134 REMARK 465 TYR A 135 REMARK 465 MET A 136 REMARK 465 GLY A 137 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 215 OG1 THR A 219 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 148 106.04 -164.90 REMARK 500 ASN A 220 -65.53 -137.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8SWB RELATED DB: PDB REMARK 900 SIMILAR COMPLEX BUT DIFFERENT ASO (PO) DBREF 8SWC A 1 286 UNP O60930 RNH1_HUMAN 1 286 DBREF 8SWC B 1 20 PDB 8SWC 8SWC 1 20 DBREF 8SWC C 1 24 PDB 8SWC 8SWC 1 24 SEQADV 8SWC HIS A -7 UNP O60930 EXPRESSION TAG SEQADV 8SWC HIS A -6 UNP O60930 EXPRESSION TAG SEQADV 8SWC HIS A -5 UNP O60930 EXPRESSION TAG SEQADV 8SWC HIS A -4 UNP O60930 EXPRESSION TAG SEQADV 8SWC HIS A -3 UNP O60930 EXPRESSION TAG SEQADV 8SWC HIS A -2 UNP O60930 EXPRESSION TAG SEQADV 8SWC HIS A -1 UNP O60930 EXPRESSION TAG SEQADV 8SWC HIS A 0 UNP O60930 EXPRESSION TAG SEQADV 8SWC ASN A 210 UNP O60930 ASP 210 ENGINEERED MUTATION SEQRES 1 A 294 HIS HIS HIS HIS HIS HIS HIS HIS MET SER TRP LEU LEU SEQRES 2 A 294 PHE LEU ALA HIS ARG VAL ALA LEU ALA ALA LEU PRO CYS SEQRES 3 A 294 ARG ARG GLY SER ARG GLY PHE GLY MET PHE TYR ALA VAL SEQRES 4 A 294 ARG ARG GLY ARG LYS THR GLY VAL PHE LEU THR TRP ASN SEQRES 5 A 294 GLU CYS ARG ALA GLN VAL ASP ARG PHE PRO ALA ALA ARG SEQRES 6 A 294 PHE LYS LYS PHE ALA THR GLU ASP GLU ALA TRP ALA PHE SEQRES 7 A 294 VAL ARG LYS SER ALA SER PRO GLU VAL SER GLU GLY HIS SEQRES 8 A 294 GLU ASN GLN HIS GLY GLN GLU SER GLU ALA LYS ALA SER SEQRES 9 A 294 LYS ARG LEU ARG GLU PRO LEU ASP GLY ASP GLY HIS GLU SEQRES 10 A 294 SER ALA GLU PRO TYR ALA LYS HIS MET LYS PRO SER VAL SEQRES 11 A 294 GLU PRO ALA PRO PRO VAL SER ARG ASP THR PHE SER TYR SEQRES 12 A 294 MET GLY ASP PHE VAL VAL VAL TYR THR ASP GLY CYS CYS SEQRES 13 A 294 SER SER ASN GLY ARG ARG ARG PRO ARG ALA GLY ILE GLY SEQRES 14 A 294 VAL TYR TRP GLY PRO GLY HIS PRO LEU ASN VAL GLY ILE SEQRES 15 A 294 ARG LEU PRO GLY ARG GLN THR ASN GLN ARG ALA GLU ILE SEQRES 16 A 294 HIS ALA ALA CYS LYS ALA ILE GLU GLN ALA LYS THR GLN SEQRES 17 A 294 ASN ILE ASN LYS LEU VAL LEU TYR THR ASN SER MET PHE SEQRES 18 A 294 THR ILE ASN GLY ILE THR ASN TRP VAL GLN GLY TRP LYS SEQRES 19 A 294 LYS ASN GLY TRP LYS THR SER ALA GLY LYS GLU VAL ILE SEQRES 20 A 294 ASN LYS GLU ASP PHE VAL ALA LEU GLU ARG LEU THR GLN SEQRES 21 A 294 GLY MET ASP ILE GLN TRP MET HIS VAL PRO GLY HIS SER SEQRES 22 A 294 GLY PHE ILE GLY ASN GLU GLU ALA ASP ARG LEU ALA ARG SEQRES 23 A 294 GLU GLY ALA LYS GLN SER GLU ASP SEQRES 1 B 20 U G G C G A G U G G G U G SEQRES 2 B 20 A G U G A G G SEQRES 1 C 20 OMC C5L T39 C5L A2M DC DT DC DA DC DC DC DA SEQRES 2 C 20 DC DT OMC OMG OMC OMC A2M HET OMC C 1 18 HET C5L C 2 25 HET T39 C 3 25 HET C5L C 4 25 HET A2M C 5 23 HET OMC C 16 21 HET OMG C 21 24 HET OMC C 22 21 HET OMC C 23 21 HET A2M C 24 23 HET PO4 A 301 5 HET CA A 302 1 HET SO4 B 101 5 HET PO4 B 102 5 HET CA B 103 1 HET CA B 104 1 HETNAM OMC O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE HETNAM C5L 2'-O-(2-METHOXYETHYL)-5-METHYLCYTIDINE 5'-(DIHYDROGEN HETNAM 2 C5L PHOSPHATE) HETNAM T39 2'-O-METHOXYETHYLENE THYMIDINE 5'-MONOPHOSPHATE HETNAM A2M 2'-O-METHYLADENOSINE 5'-(DIHYDROGEN PHOSPHATE) HETNAM OMG O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM CA CALCIUM ION HETNAM SO4 SULFATE ION FORMUL 3 OMC 4(C10 H16 N3 O8 P) FORMUL 3 C5L 2(C13 H22 N3 O9 P) FORMUL 3 T39 C13 H21 N2 O10 P FORMUL 3 A2M 2(C11 H16 N5 O7 P) FORMUL 3 OMG C11 H16 N5 O8 P FORMUL 4 PO4 2(O4 P 3-) FORMUL 5 CA 3(CA 2+) FORMUL 6 SO4 O4 S 2- FORMUL 10 HOH *5(H2 O) HELIX 1 AA1 THR A 181 THR A 199 1 19 HELIX 2 AA2 SER A 211 ASN A 220 1 10 HELIX 3 AA3 ASN A 220 ASN A 228 1 9 HELIX 4 AA4 ASN A 240 THR A 251 1 12 HELIX 5 AA5 PHE A 267 LYS A 282 1 16 SHEET 1 AA1 5 VAL A 172 ARG A 175 0 SHEET 2 AA1 5 ARG A 157 TYR A 163 -1 N ILE A 160 O ILE A 174 SHEET 3 AA1 5 VAL A 140 SER A 149 -1 N SER A 149 O ARG A 157 SHEET 4 AA1 5 LYS A 204 THR A 209 1 O VAL A 206 N VAL A 140 SHEET 5 AA1 5 ASP A 255 HIS A 260 1 O MET A 259 N LEU A 207 LINK O3' OMC C 1 P C5L C 2 1555 1555 1.61 LINK O3' C5L C 2 P T39 C 3 1555 1555 1.61 LINK O3' T39 C 3 P C5L C 4 1555 1555 1.60 LINK O3' C5L C 4 P A2M C 5 1555 1555 1.60 LINK O3' A2M C 5 P DC C 6 1555 1555 1.61 LINK O3' DT C 15 P OMC C 16 1555 1555 1.61 LINK O3' OMC C 16 P OMG C 21 1555 1555 1.61 LINK O3' OMG C 21 P OMC C 22 1555 1555 1.61 LINK O3' OMC C 22 P OMC C 23 1555 1555 1.61 LINK O3' OMC C 23 P A2M C 24 1555 1555 1.61 LINK O6 G B 3 CA CA B 103 1555 1555 3.06 LINK CA CA B 104 O HOH B 201 1555 1555 3.00 CRYST1 100.617 100.617 82.092 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009939 0.005738 0.000000 0.00000 SCALE2 0.000000 0.011476 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012181 0.00000