HEADER TRANSFERASE 19-MAY-23 8SWT TITLE STRUCTURE OF BACTEROIDES FRAGILIS PNP BOUND TO TRANSITION STATE ANALOG TITLE 2 IMMUCILLIN H AND SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS NCTC 9343; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 GENE: PUNA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PRIL KEYWDS PENTOSYLTRANSFERASE, PURINE NUCLEOSIDE PHOSPHORYLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.FEDOROV,A.GHOSH REVDAT 3 22-NOV-23 8SWT 1 JRNL REVDAT 2 25-OCT-23 8SWT 1 JRNL REVDAT 1 18-OCT-23 8SWT 0 JRNL AUTH Y.V.T.MINNOW,V.L.SCHRAMM,S.C.ALMO,A.GHOSH JRNL TITL PHOSPHATE BINDING IN PNP ALTERS TRANSITION-STATE ANALOGUE JRNL TITL 2 AFFINITY AND SUBUNIT COOPERATIVITY. JRNL REF BIOCHEMISTRY V. 62 3116 2023 JRNL REFN ISSN 0006-2960 JRNL PMID 37812583 JRNL DOI 10.1021/ACS.BIOCHEM.3C00264 REMARK 2 REMARK 2 RESOLUTION. 1.66 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.66 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 67654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.173 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.930 REMARK 3 FREE R VALUE TEST SET COUNT : 3338 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9000 - 4.7700 1.00 2824 134 0.1506 0.1773 REMARK 3 2 4.7600 - 3.7900 0.95 2591 177 0.1273 0.1403 REMARK 3 3 3.7900 - 3.3200 1.00 2763 153 0.1430 0.1365 REMARK 3 4 3.3200 - 3.0100 1.00 2782 153 0.1514 0.1624 REMARK 3 5 3.0100 - 2.8000 1.00 2764 139 0.1557 0.1874 REMARK 3 6 2.8000 - 2.6300 1.00 2753 148 0.1654 0.1810 REMARK 3 7 2.6300 - 2.5000 1.00 2773 142 0.1648 0.1931 REMARK 3 8 2.5000 - 2.3900 1.00 2786 121 0.1593 0.2232 REMARK 3 9 2.3900 - 2.3000 1.00 2785 138 0.1510 0.1692 REMARK 3 10 2.3000 - 2.2200 0.64 1727 112 0.1470 0.1954 REMARK 3 11 2.2200 - 2.1500 1.00 2771 129 0.1460 0.1759 REMARK 3 12 2.1500 - 2.0900 1.00 2767 143 0.1372 0.1559 REMARK 3 13 2.0900 - 2.0400 1.00 2784 121 0.1405 0.1744 REMARK 3 14 2.0400 - 1.9900 1.00 2765 143 0.1486 0.2345 REMARK 3 15 1.9900 - 1.9400 1.00 2768 148 0.1536 0.1821 REMARK 3 16 1.9400 - 1.9000 0.66 1835 85 0.1445 0.2181 REMARK 3 17 1.9000 - 1.8600 1.00 2777 126 0.1478 0.1907 REMARK 3 18 1.8600 - 1.8300 1.00 2744 169 0.1419 0.1977 REMARK 3 19 1.8300 - 1.7900 1.00 2765 159 0.1370 0.1651 REMARK 3 20 1.7900 - 1.7600 1.00 2721 138 0.1364 0.1904 REMARK 3 21 1.7600 - 1.7400 1.00 2790 146 0.1375 0.1587 REMARK 3 22 1.7400 - 1.7100 1.00 2758 150 0.1404 0.1837 REMARK 3 23 1.7100 - 1.6800 1.00 2796 118 0.1456 0.1943 REMARK 3 24 1.6800 - 1.6600 1.00 2727 146 0.1513 0.2121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.130 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 NULL REMARK 3 ANGLE : 1.733 NULL REMARK 3 CHIRALITY : 0.108 668 REMARK 3 PLANARITY : 0.014 766 REMARK 3 DIHEDRAL : 5.771 595 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.4133 -19.7365 -11.5518 REMARK 3 T TENSOR REMARK 3 T11: 0.1176 T22: 0.0980 REMARK 3 T33: 0.1075 T12: 0.0111 REMARK 3 T13: -0.0179 T23: 0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.8100 L22: 0.8345 REMARK 3 L33: 1.2313 L12: 0.1436 REMARK 3 L13: -0.2728 L23: -0.3389 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: 0.0863 S13: 0.0205 REMARK 3 S21: -0.0376 S22: -0.0171 S23: 0.0358 REMARK 3 S31: -0.1361 S32: -0.1164 S33: -0.0118 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.0333 -29.9276 -11.7587 REMARK 3 T TENSOR REMARK 3 T11: 0.0988 T22: 0.1273 REMARK 3 T33: 0.1301 T12: 0.0044 REMARK 3 T13: -0.0145 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.4500 L22: 1.7231 REMARK 3 L33: 2.8744 L12: 0.3197 REMARK 3 L13: -0.8468 L23: -1.1420 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: 0.0428 S13: 0.1005 REMARK 3 S21: -0.0033 S22: 0.1328 S23: 0.1440 REMARK 3 S31: 0.1165 S32: -0.1998 S33: -0.1365 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2982 -28.4624 3.9202 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.0524 REMARK 3 T33: 0.0663 T12: 0.0090 REMARK 3 T13: -0.0062 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.5099 L22: 0.5833 REMARK 3 L33: 0.7494 L12: 0.0214 REMARK 3 L13: -0.0793 L23: -0.1777 REMARK 3 S TENSOR REMARK 3 S11: 0.0064 S12: -0.0378 S13: 0.0503 REMARK 3 S21: 0.0296 S22: 0.0054 S23: 0.0154 REMARK 3 S31: -0.0976 S32: -0.0493 S33: -0.0086 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.2510 -18.8695 56.0096 REMARK 3 T TENSOR REMARK 3 T11: 0.1026 T22: 0.1038 REMARK 3 T33: 0.1226 T12: 0.0128 REMARK 3 T13: -0.0097 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 1.7042 L22: 0.5113 REMARK 3 L33: 1.9130 L12: -0.2209 REMARK 3 L13: -0.4513 L23: 0.2688 REMARK 3 S TENSOR REMARK 3 S11: -0.0030 S12: -0.1351 S13: 0.1145 REMARK 3 S21: 0.0137 S22: -0.0249 S23: 0.0246 REMARK 3 S31: -0.1123 S32: -0.0625 S33: 0.0246 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 51 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.1082 -23.5073 56.0492 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.1280 REMARK 3 T33: 0.1335 T12: -0.0146 REMARK 3 T13: 0.0001 T23: -0.0224 REMARK 3 L TENSOR REMARK 3 L11: 0.7980 L22: 0.8677 REMARK 3 L33: 2.2688 L12: -0.6725 REMARK 3 L13: -0.8046 L23: 0.2776 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: -0.0092 S13: 0.0953 REMARK 3 S21: -0.0777 S22: 0.0430 S23: -0.0425 REMARK 3 S31: 0.0000 S32: 0.1583 S33: -0.0898 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 65 THROUGH 136 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.7627 -24.8322 44.9468 REMARK 3 T TENSOR REMARK 3 T11: 0.0651 T22: 0.0469 REMARK 3 T33: 0.0787 T12: 0.0115 REMARK 3 T13: -0.0110 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.6769 L22: 0.7653 REMARK 3 L33: 0.9759 L12: 0.0122 REMARK 3 L13: -0.0809 L23: -0.0246 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: 0.0053 S13: 0.0784 REMARK 3 S21: -0.0062 S22: 0.0066 S23: 0.0389 REMARK 3 S31: -0.1375 S32: -0.0495 S33: 0.0024 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 137 THROUGH 161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.7846 -37.7261 46.6081 REMARK 3 T TENSOR REMARK 3 T11: 0.0730 T22: 0.0450 REMARK 3 T33: 0.0754 T12: 0.0066 REMARK 3 T13: 0.0011 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 1.3126 L22: 1.1473 REMARK 3 L33: 0.7180 L12: 0.1561 REMARK 3 L13: -0.2648 L23: -0.1033 REMARK 3 S TENSOR REMARK 3 S11: -0.0011 S12: -0.0378 S13: 0.0452 REMARK 3 S21: -0.0315 S22: -0.0027 S23: 0.0729 REMARK 3 S31: -0.0072 S32: -0.0508 S33: 0.0078 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 162 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0725 -25.3317 35.6864 REMARK 3 T TENSOR REMARK 3 T11: 0.0881 T22: 0.0526 REMARK 3 T33: 0.0676 T12: 0.0051 REMARK 3 T13: -0.0090 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 0.4776 L22: 0.6251 REMARK 3 L33: 0.8005 L12: -0.0932 REMARK 3 L13: -0.0684 L23: -0.0476 REMARK 3 S TENSOR REMARK 3 S11: -0.0016 S12: 0.0484 S13: 0.0700 REMARK 3 S21: -0.0475 S22: 0.0090 S23: 0.0164 REMARK 3 S31: -0.1555 S32: -0.0236 S33: -0.0038 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SWT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274619. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-JUN-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67700 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.660 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.66 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 8.80 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) PEG 8,000, 0.2 M MAGNESIUM REMARK 280 ACETATE AND 0.1 M SODIUM CACODYLATE, PH 6.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 83.15500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 83.15500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.15500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -39.71200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -68.78320 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 39.71200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -68.78320 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 -39.71200 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 -68.78320 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 39.71200 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 -68.78320 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 650 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 613 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 642 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 248 O HOH B 401 1.77 REMARK 500 O HOH A 497 O HOH A 641 2.02 REMARK 500 O HOH A 627 O HOH A 641 2.04 REMARK 500 O HOH B 579 O HOH B 596 2.10 REMARK 500 O HOH A 513 O HOH A 632 2.10 REMARK 500 O HOH A 638 O HOH A 641 2.10 REMARK 500 O HOH A 640 O HOH A 641 2.11 REMARK 500 OE1 GLU B 163 NH2 ARG B 166 2.13 REMARK 500 O HOH B 401 O HOH B 537 2.16 REMARK 500 NZ LYS A 16 O HOH A 401 2.17 REMARK 500 NZ LYS B 260 O HOH B 402 2.18 REMARK 500 OE1 GLU A 163 NH2 ARG A 166 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 158 CD GLU B 158 OE2 0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 1 CG - SD - CE ANGL. DEV. = -25.7 DEGREES REMARK 500 MET A 101 CG - SD - CE ANGL. DEV. = -11.6 DEGREES REMARK 500 MET A 156 CA - CB - CG ANGL. DEV. = -10.9 DEGREES REMARK 500 MET B 4 CG - SD - CE ANGL. DEV. = -10.7 DEGREES REMARK 500 PHE B 54 CB - CG - CD1 ANGL. DEV. = -5.5 DEGREES REMARK 500 ASP B 207 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ASP B 207 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP B 255 CB - CG - OD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 213 -53.54 71.83 REMARK 500 THR B 213 -54.54 77.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 651 DISTANCE = 6.04 ANGSTROMS DBREF 8SWT A 2 272 UNP Q5LAA3 Q5LAA3_BACFN 1 271 DBREF 8SWT B 2 272 UNP Q5LAA3 Q5LAA3_BACFN 1 271 SEQADV 8SWT MET A -21 UNP Q5LAA3 INITIATING METHIONINE SEQADV 8SWT HIS A -20 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT HIS A -19 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT HIS A -18 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT HIS A -17 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT HIS A -16 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT HIS A -15 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT SER A -14 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT SER A -13 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT GLY A -12 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT VAL A -11 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT ASP A -10 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT LEU A -9 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT GLY A -8 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT THR A -7 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT GLU A -6 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT ASN A -5 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT LEU A -4 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT TYR A -3 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT PHE A -2 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT GLN A -1 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT SER A 0 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT MET A 1 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT MET B -21 UNP Q5LAA3 INITIATING METHIONINE SEQADV 8SWT HIS B -20 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT HIS B -19 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT HIS B -18 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT HIS B -17 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT HIS B -16 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT HIS B -15 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT SER B -14 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT SER B -13 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT GLY B -12 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT VAL B -11 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT ASP B -10 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT LEU B -9 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT GLY B -8 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT THR B -7 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT GLU B -6 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT ASN B -5 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT LEU B -4 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT TYR B -3 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT PHE B -2 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT GLN B -1 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT SER B 0 UNP Q5LAA3 EXPRESSION TAG SEQADV 8SWT MET B 1 UNP Q5LAA3 EXPRESSION TAG SEQRES 1 A 294 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 294 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET ALA MET SEQRES 3 A 294 LEU GLU LYS ILE GLN GLU THR ALA ALA PHE LEU LYS GLY SEQRES 4 A 294 LYS MET HIS THR SER PRO GLU THR ALA ILE ILE LEU GLY SEQRES 5 A 294 THR GLY LEU GLY SER LEU ALA ASN GLU ILE THR GLU LYS SEQRES 6 A 294 TYR GLU ILE LYS TYR GLU ASP ILE PRO ASN PHE PRO VAL SEQRES 7 A 294 SER THR VAL GLU GLY HIS SER GLY LYS LEU ILE PHE GLY SEQRES 8 A 294 LYS LEU GLY ASN LYS GLU ILE MET ALA MET GLN GLY ARG SEQRES 9 A 294 PHE HIS TYR TYR GLU GLY TYR SER MET LYS GLU VAL THR SEQRES 10 A 294 PHE PRO VAL ARG VAL MET ARG GLU LEU GLY ILE LYS THR SEQRES 11 A 294 LEU PHE VAL SER ASN ALA SER GLY GLY THR ASN PRO GLU SEQRES 12 A 294 PHE GLU ILE GLY ASP LEU MET ILE ILE THR ASP HIS ILE SEQRES 13 A 294 ASN TYR PHE PRO GLU HIS PRO LEU ARG GLY LYS ASN ILE SEQRES 14 A 294 PRO TYR GLY PRO ARG PHE PRO ASP MET SER GLU ALA TYR SEQRES 15 A 294 ASP LYS GLU LEU ILE ARG LYS ALA ASP ALA ILE ALA ALA SEQRES 16 A 294 GLU LYS GLY ILE LYS VAL GLN HIS GLY ILE TYR ILE GLY SEQRES 17 A 294 THR GLN GLY PRO THR PHE GLU THR PRO ALA GLU TYR LYS SEQRES 18 A 294 LEU PHE HIS ILE LEU GLY ALA ASP ALA VAL GLY MET SER SEQRES 19 A 294 THR VAL PRO GLU VAL ILE VAL ALA ASN HIS CYS GLY ILE SEQRES 20 A 294 LYS VAL PHE GLY ILE SER VAL VAL THR ASP LEU GLY VAL SEQRES 21 A 294 GLU GLY LYS ILE VAL GLU VAL SER HIS GLU GLU VAL GLN SEQRES 22 A 294 LYS ALA ALA ASP ALA ALA GLN PRO LYS MET THR THR ILE SEQRES 23 A 294 MET ARG GLU LEU ILE ASN ARG ALA SEQRES 1 B 294 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 294 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET ALA MET SEQRES 3 B 294 LEU GLU LYS ILE GLN GLU THR ALA ALA PHE LEU LYS GLY SEQRES 4 B 294 LYS MET HIS THR SER PRO GLU THR ALA ILE ILE LEU GLY SEQRES 5 B 294 THR GLY LEU GLY SER LEU ALA ASN GLU ILE THR GLU LYS SEQRES 6 B 294 TYR GLU ILE LYS TYR GLU ASP ILE PRO ASN PHE PRO VAL SEQRES 7 B 294 SER THR VAL GLU GLY HIS SER GLY LYS LEU ILE PHE GLY SEQRES 8 B 294 LYS LEU GLY ASN LYS GLU ILE MET ALA MET GLN GLY ARG SEQRES 9 B 294 PHE HIS TYR TYR GLU GLY TYR SER MET LYS GLU VAL THR SEQRES 10 B 294 PHE PRO VAL ARG VAL MET ARG GLU LEU GLY ILE LYS THR SEQRES 11 B 294 LEU PHE VAL SER ASN ALA SER GLY GLY THR ASN PRO GLU SEQRES 12 B 294 PHE GLU ILE GLY ASP LEU MET ILE ILE THR ASP HIS ILE SEQRES 13 B 294 ASN TYR PHE PRO GLU HIS PRO LEU ARG GLY LYS ASN ILE SEQRES 14 B 294 PRO TYR GLY PRO ARG PHE PRO ASP MET SER GLU ALA TYR SEQRES 15 B 294 ASP LYS GLU LEU ILE ARG LYS ALA ASP ALA ILE ALA ALA SEQRES 16 B 294 GLU LYS GLY ILE LYS VAL GLN HIS GLY ILE TYR ILE GLY SEQRES 17 B 294 THR GLN GLY PRO THR PHE GLU THR PRO ALA GLU TYR LYS SEQRES 18 B 294 LEU PHE HIS ILE LEU GLY ALA ASP ALA VAL GLY MET SER SEQRES 19 B 294 THR VAL PRO GLU VAL ILE VAL ALA ASN HIS CYS GLY ILE SEQRES 20 B 294 LYS VAL PHE GLY ILE SER VAL VAL THR ASP LEU GLY VAL SEQRES 21 B 294 GLU GLY LYS ILE VAL GLU VAL SER HIS GLU GLU VAL GLN SEQRES 22 B 294 LYS ALA ALA ASP ALA ALA GLN PRO LYS MET THR THR ILE SEQRES 23 B 294 MET ARG GLU LEU ILE ASN ARG ALA HET IMH A 300 19 HET SO4 A 301 5 HET IMH B 300 19 HET SO4 B 301 5 HETNAM IMH 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D- HETNAM 2 IMH RIBITOL HETNAM SO4 SULFATE ION HETSYN IMH FORODESINE; IMMUCILLIN H FORMUL 3 IMH 2(C11 H14 N4 O4) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *495(H2 O) HELIX 1 AA1 ASN A -5 GLY A 17 1 23 HELIX 2 AA2 LEU A 33 ILE A 40 5 8 HELIX 3 AA3 GLU A 49 ILE A 51 5 3 HELIX 4 AA4 HIS A 84 GLY A 88 5 5 HELIX 5 AA5 SER A 90 THR A 95 1 6 HELIX 6 AA6 THR A 95 LEU A 104 1 10 HELIX 7 AA7 ASP A 161 GLY A 176 1 16 HELIX 8 AA8 THR A 194 LEU A 204 1 11 HELIX 9 AA9 THR A 213 GLY A 224 1 12 HELIX 10 AB1 SER A 246 ALA A 272 1 27 HELIX 11 AB2 MET B 1 GLY B 17 1 17 HELIX 12 AB3 LEU B 33 ILE B 40 5 8 HELIX 13 AB4 GLU B 49 ILE B 51 5 3 HELIX 14 AB5 HIS B 84 GLY B 88 5 5 HELIX 15 AB6 SER B 90 THR B 95 1 6 HELIX 16 AB7 THR B 95 GLY B 105 1 11 HELIX 17 AB8 ASP B 161 GLY B 176 1 16 HELIX 18 AB9 THR B 194 GLY B 205 1 12 HELIX 19 AC1 THR B 213 GLY B 224 1 12 HELIX 20 AC2 SER B 246 ALA B 272 1 27 SHEET 1 AA110 THR A 41 LYS A 47 0 SHEET 2 AA110 LYS A 65 LEU A 71 -1 O LEU A 66 N ILE A 46 SHEET 3 AA110 LYS A 74 GLN A 80 -1 O ALA A 78 N ILE A 67 SHEET 4 AA110 THR A 25 LEU A 29 1 N ILE A 27 O MET A 79 SHEET 5 AA110 THR A 108 GLY A 117 1 O PHE A 110 N ALA A 26 SHEET 6 AA110 LYS A 226 LEU A 236 1 O THR A 234 N SER A 115 SHEET 7 AA110 LEU A 127 ASN A 135 -1 N MET A 128 O SER A 231 SHEET 8 AA110 GLN A 180 GLY A 186 1 O GLN A 180 N LEU A 127 SHEET 9 AA110 ALA A 208 GLY A 210 1 O ALA A 208 N ILE A 185 SHEET 10 AA110 THR A 108 GLY A 117 -1 N GLY A 116 O VAL A 209 SHEET 1 AA210 THR B 41 LYS B 47 0 SHEET 2 AA210 LYS B 65 LEU B 71 -1 O PHE B 68 N TYR B 44 SHEET 3 AA210 LYS B 74 GLN B 80 -1 O ILE B 76 N GLY B 69 SHEET 4 AA210 THR B 25 LEU B 29 1 N ILE B 27 O MET B 79 SHEET 5 AA210 THR B 108 GLY B 117 1 O PHE B 110 N ALA B 26 SHEET 6 AA210 LYS B 226 LEU B 236 1 O LYS B 226 N LEU B 109 SHEET 7 AA210 LEU B 127 ASN B 135 -1 N MET B 128 O SER B 231 SHEET 8 AA210 GLN B 180 GLY B 186 1 O GLN B 180 N ILE B 129 SHEET 9 AA210 ALA B 208 GLY B 210 1 O ALA B 208 N ILE B 185 SHEET 10 AA210 THR B 108 GLY B 117 -1 N GLY B 116 O VAL B 209 CISPEP 1 GLY A 189 PRO A 190 0 11.14 CISPEP 2 GLY B 189 PRO B 190 0 7.90 CRYST1 79.424 79.424 166.310 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012591 0.007269 0.000000 0.00000 SCALE2 0.000000 0.014538 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006013 0.00000