HEADER TRANSFERASE 19-MAY-23 8SWU TITLE STRUCTURE OF CLOSTRIDIUM PERFRINGENS PNP BOUND TO TRANSITION STATE TITLE 2 ANALOG IMMUCILLIN H AND SULFATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: INOSINE-GUANOSINE PHOSPHORYLASE; COMPND 5 EC: 2.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS ATCC 13124; SOURCE 3 ORGANISM_TAXID: 195103; SOURCE 4 GENE: PUNA, CPF_2818; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: PRIL KEYWDS PENTOSYLTRANSFERASE, PURINE NUCLEOSIDE PHOSPHORYLASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR E.FEDOROV,A.GHOSH REVDAT 3 22-NOV-23 8SWU 1 JRNL REVDAT 2 25-OCT-23 8SWU 1 JRNL REVDAT 1 18-OCT-23 8SWU 0 JRNL AUTH Y.V.T.MINNOW,V.L.SCHRAMM,S.C.ALMO,A.GHOSH JRNL TITL PHOSPHATE BINDING IN PNP ALTERS TRANSITION-STATE ANALOGUE JRNL TITL 2 AFFINITY AND SUBUNIT COOPERATIVITY. JRNL REF BIOCHEMISTRY V. 62 3116 2023 JRNL REFN ISSN 0006-2960 JRNL PMID 37812583 JRNL DOI 10.1021/ACS.BIOCHEM.3C00264 REMARK 2 REMARK 2 RESOLUTION. 2.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.19.1_4122: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 39580 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 2052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8700 - 5.7300 1.00 2561 157 0.1914 0.2072 REMARK 3 2 5.7300 - 4.5700 1.00 2499 177 0.1899 0.2224 REMARK 3 3 4.5700 - 4.0000 1.00 2504 149 0.1854 0.1933 REMARK 3 4 4.0000 - 3.6300 1.00 2532 134 0.2045 0.2464 REMARK 3 5 3.6300 - 3.3700 1.00 2552 114 0.2399 0.2850 REMARK 3 6 3.3700 - 3.1800 1.00 2563 82 0.2422 0.3041 REMARK 3 7 3.1800 - 3.0200 1.00 2519 120 0.2646 0.2689 REMARK 3 8 3.0200 - 2.8900 1.00 2493 169 0.2628 0.3096 REMARK 3 9 2.8900 - 2.7800 1.00 2503 144 0.2604 0.3038 REMARK 3 10 2.7800 - 2.6800 1.00 2502 149 0.2643 0.3287 REMARK 3 11 2.6800 - 2.6000 1.00 2496 141 0.2780 0.3291 REMARK 3 12 2.6000 - 2.5200 1.00 2522 140 0.2774 0.3553 REMARK 3 13 2.5200 - 2.4600 1.00 2500 133 0.2759 0.2898 REMARK 3 14 2.4600 - 2.4000 1.00 2522 132 0.2710 0.3237 REMARK 3 15 2.4000 - 2.3400 0.90 2260 111 0.2876 0.3666 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.500 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 6356 REMARK 3 ANGLE : 0.568 8597 REMARK 3 CHIRALITY : 0.043 979 REMARK 3 PLANARITY : 0.004 1106 REMARK 3 DIHEDRAL : 5.155 871 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.2945 -0.4615 49.1399 REMARK 3 T TENSOR REMARK 3 T11: 0.2523 T22: 0.2441 REMARK 3 T33: 0.2429 T12: 0.0142 REMARK 3 T13: -0.0217 T23: -0.0256 REMARK 3 L TENSOR REMARK 3 L11: 2.4047 L22: 1.9366 REMARK 3 L33: 1.8334 L12: -0.7175 REMARK 3 L13: -0.1137 L23: -0.9600 REMARK 3 S TENSOR REMARK 3 S11: -0.0942 S12: -0.3950 S13: -0.0419 REMARK 3 S21: 0.1699 S22: 0.1196 S23: -0.0542 REMARK 3 S31: -0.0952 S32: -0.1413 S33: -0.0041 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 50 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9916 -6.7699 33.4417 REMARK 3 T TENSOR REMARK 3 T11: 0.1750 T22: 0.1618 REMARK 3 T33: 0.2208 T12: -0.0148 REMARK 3 T13: 0.0010 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 0.7142 L22: 0.8546 REMARK 3 L33: 1.2280 L12: 0.0213 REMARK 3 L13: 0.1091 L23: -0.1169 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.0918 S13: -0.0106 REMARK 3 S21: 0.0226 S22: -0.0554 S23: -0.0574 REMARK 3 S31: 0.0668 S32: 0.0348 S33: 0.0366 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 226 THROUGH 257 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0146 -20.9820 32.1388 REMARK 3 T TENSOR REMARK 3 T11: 0.2523 T22: 0.1769 REMARK 3 T33: 0.2991 T12: -0.0289 REMARK 3 T13: 0.0260 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 2.3494 L22: 1.2404 REMARK 3 L33: 2.5447 L12: 0.2892 REMARK 3 L13: -1.2604 L23: -1.0477 REMARK 3 S TENSOR REMARK 3 S11: 0.0398 S12: -0.2913 S13: -0.3542 REMARK 3 S21: 0.0161 S22: -0.1413 S23: 0.1592 REMARK 3 S31: 0.7571 S32: -0.1178 S33: 0.0418 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 258 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.7335 -18.1026 44.0445 REMARK 3 T TENSOR REMARK 3 T11: 0.2718 T22: 0.2986 REMARK 3 T33: 0.3112 T12: 0.0779 REMARK 3 T13: -0.0239 T23: 0.0403 REMARK 3 L TENSOR REMARK 3 L11: 4.4664 L22: 3.4264 REMARK 3 L33: 2.6081 L12: 1.8223 REMARK 3 L13: 0.7692 L23: 1.0127 REMARK 3 S TENSOR REMARK 3 S11: -0.0679 S12: -0.0609 S13: 0.1280 REMARK 3 S21: 0.0840 S22: 0.0990 S23: 0.1473 REMARK 3 S31: 0.3819 S32: 0.3203 S33: -0.0397 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9507 -2.0308 29.4405 REMARK 3 T TENSOR REMARK 3 T11: 0.2852 T22: 0.8412 REMARK 3 T33: 0.4004 T12: 0.0573 REMARK 3 T13: -0.0046 T23: -0.1290 REMARK 3 L TENSOR REMARK 3 L11: 8.1902 L22: 0.8958 REMARK 3 L33: 2.7972 L12: -1.0625 REMARK 3 L13: 2.7298 L23: -1.4085 REMARK 3 S TENSOR REMARK 3 S11: -0.0468 S12: -0.6864 S13: 0.4965 REMARK 3 S21: -0.0765 S22: -0.2901 S23: 0.4446 REMARK 3 S31: -0.2536 S32: -0.7116 S33: 0.2941 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.4253 -6.7454 13.7005 REMARK 3 T TENSOR REMARK 3 T11: 0.2474 T22: 0.4955 REMARK 3 T33: 0.4608 T12: 0.0014 REMARK 3 T13: -0.0816 T23: -0.0381 REMARK 3 L TENSOR REMARK 3 L11: 0.7668 L22: 3.4003 REMARK 3 L33: 2.2342 L12: -0.1484 REMARK 3 L13: 0.2212 L23: 1.3717 REMARK 3 S TENSOR REMARK 3 S11: -0.0846 S12: -0.1269 S13: 0.2948 REMARK 3 S21: -0.2596 S22: -0.2510 S23: 0.5962 REMARK 3 S31: -0.1338 S32: -0.1920 S33: 0.3535 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 78 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8400 -10.5610 13.0769 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.2522 REMARK 3 T33: 0.2099 T12: -0.0050 REMARK 3 T13: -0.0311 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 1.5016 L22: 0.6305 REMARK 3 L33: 1.1521 L12: 0.5339 REMARK 3 L13: -0.1060 L23: 0.2095 REMARK 3 S TENSOR REMARK 3 S11: 0.0084 S12: 0.1429 S13: -0.1313 REMARK 3 S21: -0.1139 S22: -0.0034 S23: 0.0908 REMARK 3 S31: 0.0757 S32: -0.2901 S33: 0.0012 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 226 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6937 -9.9767 -0.3942 REMARK 3 T TENSOR REMARK 3 T11: 0.4566 T22: 0.4796 REMARK 3 T33: 0.3353 T12: -0.0359 REMARK 3 T13: -0.1134 T23: -0.0573 REMARK 3 L TENSOR REMARK 3 L11: 1.1966 L22: 1.3867 REMARK 3 L33: 0.6755 L12: 0.0129 REMARK 3 L13: 0.4570 L23: 0.5449 REMARK 3 S TENSOR REMARK 3 S11: 0.0725 S12: 0.3413 S13: 0.1383 REMARK 3 S21: -0.6211 S22: -0.0416 S23: 0.3505 REMARK 3 S31: -0.0289 S32: -0.0521 S33: 0.0026 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 0 THROUGH 37 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.2233 27.9358 8.5263 REMARK 3 T TENSOR REMARK 3 T11: 0.3299 T22: 0.2027 REMARK 3 T33: 0.1796 T12: 0.0433 REMARK 3 T13: 0.0101 T23: 0.0585 REMARK 3 L TENSOR REMARK 3 L11: 3.5580 L22: 1.6907 REMARK 3 L33: 1.9013 L12: 0.7742 REMARK 3 L13: -1.4151 L23: 0.2331 REMARK 3 S TENSOR REMARK 3 S11: 0.3243 S12: -0.0309 S13: 0.1104 REMARK 3 S21: -0.2348 S22: -0.1974 S23: -0.1095 REMARK 3 S31: -0.1062 S32: 0.0701 S33: -0.0941 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 38 THROUGH 225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7513 13.8157 7.6364 REMARK 3 T TENSOR REMARK 3 T11: 0.2852 T22: 0.2321 REMARK 3 T33: 0.2115 T12: -0.0090 REMARK 3 T13: 0.0228 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 0.2020 L22: 0.9906 REMARK 3 L33: -0.0556 L12: -0.5293 REMARK 3 L13: -0.2429 L23: 0.1703 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: 0.1742 S13: 0.0365 REMARK 3 S21: -0.1882 S22: -0.0483 S23: -0.0772 REMARK 3 S31: -0.1004 S32: 0.0178 S33: -0.0012 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 226 THROUGH 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.4922 13.1049 8.3828 REMARK 3 T TENSOR REMARK 3 T11: 0.2981 T22: 0.3589 REMARK 3 T33: 0.4167 T12: -0.0290 REMARK 3 T13: 0.0954 T23: 0.0364 REMARK 3 L TENSOR REMARK 3 L11: 0.9342 L22: 2.1949 REMARK 3 L33: 1.2082 L12: 0.1809 REMARK 3 L13: -0.4512 L23: -0.5331 REMARK 3 S TENSOR REMARK 3 S11: 0.1612 S12: 0.0635 S13: 0.2004 REMARK 3 S21: -0.0478 S22: -0.2652 S23: -0.5792 REMARK 3 S31: -0.2371 S32: 0.3889 S33: 0.1394 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SWU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274627. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 17-ID-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39636 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.340 REMARK 200 RESOLUTION RANGE LOW (A) : 19.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.20400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 8.20 REMARK 200 R MERGE FOR SHELL (I) : 0.75600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% (W/V) PEG 3,350 AND 0.1 M TRI REMARK 280 -SODIUM CITRATE, PH 3.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.91200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 58 REMARK 465 GLU A 59 REMARK 465 GLY A 60 REMARK 465 HIS A 61 REMARK 465 SER B 0 REMARK 465 THR B 57 REMARK 465 VAL B 58 REMARK 465 GLU B 59 REMARK 465 GLY B 60 REMARK 465 HIS B 61 REMARK 465 VAL C 58 REMARK 465 GLU C 59 REMARK 465 GLY C 60 REMARK 465 HIS C 61 REMARK 465 ALA C 62 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 251 C MET A 251 O 0.122 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -104.56 73.17 REMARK 500 PHE A 70 110.76 -161.70 REMARK 500 SER A 212 -154.40 -148.53 REMARK 500 THR A 213 -62.09 69.41 REMARK 500 GLU A 242 67.34 -102.47 REMARK 500 ASN B 21 77.54 -111.67 REMARK 500 GLN B 79 -70.30 -82.80 REMARK 500 SER B 212 -160.61 -162.86 REMARK 500 THR B 213 -53.50 71.59 REMARK 500 LEU C 32 19.89 45.39 REMARK 500 SER C 212 -156.21 -155.35 REMARK 500 THR C 213 -48.66 68.87 REMARK 500 GLU C 242 48.49 -100.13 REMARK 500 REMARK 500 REMARK: NULL DBREF1 8SWU A 1 272 UNP A0A0H2YR30_CLOP1 DBREF2 8SWU A A0A0H2YR30 1 272 DBREF1 8SWU B 1 272 UNP A0A0H2YR30_CLOP1 DBREF2 8SWU B A0A0H2YR30 1 272 DBREF1 8SWU C 1 272 UNP A0A0H2YR30_CLOP1 DBREF2 8SWU C A0A0H2YR30 1 272 SEQADV 8SWU SER A 0 UNP A0A0H2YR3 EXPRESSION TAG SEQADV 8SWU SER B 0 UNP A0A0H2YR3 EXPRESSION TAG SEQADV 8SWU SER C 0 UNP A0A0H2YR3 EXPRESSION TAG SEQRES 1 A 273 SER MET ASP LEU SER ASN LYS ILE LYS ALA ALA ALA GLU SEQRES 2 A 273 TYR ILE LYS GLY LYS SER LYS TYR ASN PRO THR ILE GLY SEQRES 3 A 273 LEU ILE LEU GLY SER GLY LEU GLY ALA ILE ALA ASP GLN SEQRES 4 A 273 ILE GLU ASP ALA GLU TYR PHE PRO TYR ASN GLU ILE PRO SEQRES 5 A 273 ASN PHE PRO VAL SER THR VAL GLU GLY HIS ALA GLY ARG SEQRES 6 A 273 LEU VAL ILE GLY LYS PHE GLN GLY LYS GLU VAL VAL ALA SEQRES 7 A 273 MET GLN GLY ARG PHE HIS TYR TYR GLU GLY TYR SER MET SEQRES 8 A 273 GLN GLU VAL THR CYS PRO VAL ARG VAL MET ARG LEU LEU SEQRES 9 A 273 GLY VAL GLU THR LEU VAL VAL THR ASN ALA ALA GLY ALA SEQRES 10 A 273 VAL ASN LYS ASP TYR THR PRO GLY ASP LEU MET ILE ILE SEQRES 11 A 273 SER ASP HIS LEU ASN LEU SER GLY SER ASN PRO LEU ILE SEQRES 12 A 273 GLY LYS ASN LEU ASN GLU PHE GLY THR ARG PHE PRO ASP SEQRES 13 A 273 MET SER ASN ALA TYR ASP LYS ASP LEU ARG ALA GLN VAL SEQRES 14 A 273 LYS ASP ILE ALA LYS ASN LEU GLY ILE GLU VAL ARG GLU SEQRES 15 A 273 GLY VAL TYR ALA MET PHE SER GLY PRO THR TYR GLU THR SEQRES 16 A 273 PRO ALA GLU VAL ARG MET ALA ARG ILE LEU GLY ALA ASP SEQRES 17 A 273 ALA VAL GLY MET SER THR VAL PRO GLU VAL ILE ILE ALA SEQRES 18 A 273 ASN HIS SER GLY MET LYS VAL ILE GLY VAL SER CYS MET SEQRES 19 A 273 THR ASN MET ALA ALA GLY ILE LEU GLU GLN PRO LEU ASN SEQRES 20 A 273 HIS GLU GLU VAL MET GLU THR SER ALA LYS VAL ARG LYS SEQRES 21 A 273 THR PHE ILE GLU LEU MET THR ASN ILE ILE LYS GLU ILE SEQRES 1 B 273 SER MET ASP LEU SER ASN LYS ILE LYS ALA ALA ALA GLU SEQRES 2 B 273 TYR ILE LYS GLY LYS SER LYS TYR ASN PRO THR ILE GLY SEQRES 3 B 273 LEU ILE LEU GLY SER GLY LEU GLY ALA ILE ALA ASP GLN SEQRES 4 B 273 ILE GLU ASP ALA GLU TYR PHE PRO TYR ASN GLU ILE PRO SEQRES 5 B 273 ASN PHE PRO VAL SER THR VAL GLU GLY HIS ALA GLY ARG SEQRES 6 B 273 LEU VAL ILE GLY LYS PHE GLN GLY LYS GLU VAL VAL ALA SEQRES 7 B 273 MET GLN GLY ARG PHE HIS TYR TYR GLU GLY TYR SER MET SEQRES 8 B 273 GLN GLU VAL THR CYS PRO VAL ARG VAL MET ARG LEU LEU SEQRES 9 B 273 GLY VAL GLU THR LEU VAL VAL THR ASN ALA ALA GLY ALA SEQRES 10 B 273 VAL ASN LYS ASP TYR THR PRO GLY ASP LEU MET ILE ILE SEQRES 11 B 273 SER ASP HIS LEU ASN LEU SER GLY SER ASN PRO LEU ILE SEQRES 12 B 273 GLY LYS ASN LEU ASN GLU PHE GLY THR ARG PHE PRO ASP SEQRES 13 B 273 MET SER ASN ALA TYR ASP LYS ASP LEU ARG ALA GLN VAL SEQRES 14 B 273 LYS ASP ILE ALA LYS ASN LEU GLY ILE GLU VAL ARG GLU SEQRES 15 B 273 GLY VAL TYR ALA MET PHE SER GLY PRO THR TYR GLU THR SEQRES 16 B 273 PRO ALA GLU VAL ARG MET ALA ARG ILE LEU GLY ALA ASP SEQRES 17 B 273 ALA VAL GLY MET SER THR VAL PRO GLU VAL ILE ILE ALA SEQRES 18 B 273 ASN HIS SER GLY MET LYS VAL ILE GLY VAL SER CYS MET SEQRES 19 B 273 THR ASN MET ALA ALA GLY ILE LEU GLU GLN PRO LEU ASN SEQRES 20 B 273 HIS GLU GLU VAL MET GLU THR SER ALA LYS VAL ARG LYS SEQRES 21 B 273 THR PHE ILE GLU LEU MET THR ASN ILE ILE LYS GLU ILE SEQRES 1 C 273 SER MET ASP LEU SER ASN LYS ILE LYS ALA ALA ALA GLU SEQRES 2 C 273 TYR ILE LYS GLY LYS SER LYS TYR ASN PRO THR ILE GLY SEQRES 3 C 273 LEU ILE LEU GLY SER GLY LEU GLY ALA ILE ALA ASP GLN SEQRES 4 C 273 ILE GLU ASP ALA GLU TYR PHE PRO TYR ASN GLU ILE PRO SEQRES 5 C 273 ASN PHE PRO VAL SER THR VAL GLU GLY HIS ALA GLY ARG SEQRES 6 C 273 LEU VAL ILE GLY LYS PHE GLN GLY LYS GLU VAL VAL ALA SEQRES 7 C 273 MET GLN GLY ARG PHE HIS TYR TYR GLU GLY TYR SER MET SEQRES 8 C 273 GLN GLU VAL THR CYS PRO VAL ARG VAL MET ARG LEU LEU SEQRES 9 C 273 GLY VAL GLU THR LEU VAL VAL THR ASN ALA ALA GLY ALA SEQRES 10 C 273 VAL ASN LYS ASP TYR THR PRO GLY ASP LEU MET ILE ILE SEQRES 11 C 273 SER ASP HIS LEU ASN LEU SER GLY SER ASN PRO LEU ILE SEQRES 12 C 273 GLY LYS ASN LEU ASN GLU PHE GLY THR ARG PHE PRO ASP SEQRES 13 C 273 MET SER ASN ALA TYR ASP LYS ASP LEU ARG ALA GLN VAL SEQRES 14 C 273 LYS ASP ILE ALA LYS ASN LEU GLY ILE GLU VAL ARG GLU SEQRES 15 C 273 GLY VAL TYR ALA MET PHE SER GLY PRO THR TYR GLU THR SEQRES 16 C 273 PRO ALA GLU VAL ARG MET ALA ARG ILE LEU GLY ALA ASP SEQRES 17 C 273 ALA VAL GLY MET SER THR VAL PRO GLU VAL ILE ILE ALA SEQRES 18 C 273 ASN HIS SER GLY MET LYS VAL ILE GLY VAL SER CYS MET SEQRES 19 C 273 THR ASN MET ALA ALA GLY ILE LEU GLU GLN PRO LEU ASN SEQRES 20 C 273 HIS GLU GLU VAL MET GLU THR SER ALA LYS VAL ARG LYS SEQRES 21 C 273 THR PHE ILE GLU LEU MET THR ASN ILE ILE LYS GLU ILE HET IMH A 301 19 HET SO4 A 302 5 HET IMH B 301 19 HET SO4 B 302 5 HET IMH C 301 19 HET SO4 C 302 5 HETNAM IMH 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D- HETNAM 2 IMH RIBITOL HETNAM SO4 SULFATE ION HETSYN IMH FORODESINE; IMMUCILLIN H FORMUL 4 IMH 3(C11 H14 N4 O4) FORMUL 5 SO4 3(O4 S 2-) FORMUL 10 HOH *38(H2 O) HELIX 1 AA1 SER A 0 SER A 18 1 19 HELIX 2 AA2 LEU A 32 ILE A 39 5 8 HELIX 3 AA3 ASN A 48 ILE A 50 5 3 HELIX 4 AA4 HIS A 83 GLY A 87 5 5 HELIX 5 AA5 SER A 89 LEU A 103 1 15 HELIX 6 AA6 ASP A 161 GLY A 176 1 16 HELIX 7 AA7 THR A 194 GLY A 205 1 12 HELIX 8 AA8 THR A 213 GLY A 224 1 12 HELIX 9 AA9 ASN A 246 VAL A 257 1 12 HELIX 10 AB1 VAL A 257 ILE A 272 1 16 HELIX 11 AB2 ASP B 2 GLY B 16 1 15 HELIX 12 AB3 LEU B 32 ASP B 37 1 6 HELIX 13 AB4 ASN B 48 ILE B 50 5 3 HELIX 14 AB5 HIS B 83 GLY B 87 5 5 HELIX 15 AB6 SER B 89 GLY B 104 1 16 HELIX 16 AB7 ASP B 161 GLY B 176 1 16 HELIX 17 AB8 THR B 194 GLY B 205 1 12 HELIX 18 AB9 THR B 213 SER B 223 1 11 HELIX 19 AC1 ASN B 246 VAL B 257 1 12 HELIX 20 AC2 VAL B 257 ILE B 272 1 16 HELIX 21 AC3 ASP C 2 LYS C 17 1 16 HELIX 22 AC4 LEU C 32 GLN C 38 1 7 HELIX 23 AC5 ASN C 48 ILE C 50 5 3 HELIX 24 AC6 HIS C 83 GLY C 87 5 5 HELIX 25 AC7 SER C 89 LEU C 103 1 15 HELIX 26 AC8 ASP C 161 GLY C 176 1 16 HELIX 27 AC9 THR C 194 LEU C 204 1 11 HELIX 28 AD1 THR C 213 SER C 223 1 11 HELIX 29 AD2 ASN C 246 VAL C 257 1 12 HELIX 30 AD3 VAL C 257 ILE C 272 1 16 SHEET 1 AA110 GLU A 40 PRO A 46 0 SHEET 2 AA110 ARG A 64 PHE A 70 -1 O ILE A 67 N GLU A 43 SHEET 3 AA110 LYS A 73 GLN A 79 -1 O ALA A 77 N VAL A 66 SHEET 4 AA110 ILE A 24 LEU A 28 1 N LEU A 26 O MET A 78 SHEET 5 AA110 THR A 107 ALA A 116 1 O THR A 107 N GLY A 25 SHEET 6 AA110 LYS A 226 MET A 236 1 O LYS A 226 N LEU A 108 SHEET 7 AA110 LEU A 126 ASN A 134 -1 N ILE A 129 O GLY A 229 SHEET 8 AA110 VAL A 179 MET A 186 1 O ARG A 180 N ILE A 128 SHEET 9 AA110 ALA A 208 GLY A 210 1 O ALA A 208 N ALA A 185 SHEET 10 AA110 THR A 107 ALA A 116 -1 N GLY A 115 O VAL A 209 SHEET 1 AA210 GLU B 40 PRO B 46 0 SHEET 2 AA210 ARG B 64 PHE B 70 -1 O LYS B 69 N GLU B 40 SHEET 3 AA210 LYS B 73 MET B 78 -1 O ALA B 77 N VAL B 66 SHEET 4 AA210 ILE B 24 ILE B 27 1 N LEU B 26 O MET B 78 SHEET 5 AA210 THR B 107 ALA B 116 1 O THR B 107 N GLY B 25 SHEET 6 AA210 LYS B 226 MET B 236 1 O LYS B 226 N LEU B 108 SHEET 7 AA210 LEU B 126 LEU B 135 -1 N MET B 127 O SER B 231 SHEET 8 AA210 ARG B 180 PHE B 187 1 O ARG B 180 N LEU B 126 SHEET 9 AA210 ALA B 208 GLY B 210 1 O GLY B 210 N PHE B 187 SHEET 10 AA210 THR B 107 ALA B 116 -1 N GLY B 115 O VAL B 209 SHEET 1 AA310 GLU C 40 PRO C 46 0 SHEET 2 AA310 ARG C 64 PHE C 70 -1 O LEU C 65 N PHE C 45 SHEET 3 AA310 LYS C 73 GLN C 79 -1 O ALA C 77 N VAL C 66 SHEET 4 AA310 ILE C 24 LEU C 28 1 N LEU C 26 O MET C 78 SHEET 5 AA310 THR C 107 ALA C 116 1 O VAL C 109 N GLY C 25 SHEET 6 AA310 LYS C 226 MET C 236 1 O LYS C 226 N LEU C 108 SHEET 7 AA310 LEU C 126 ASN C 134 -1 N MET C 127 O SER C 231 SHEET 8 AA310 ARG C 180 MET C 186 1 O ARG C 180 N ILE C 128 SHEET 9 AA310 ALA C 208 GLY C 210 1 O ALA C 208 N ALA C 185 SHEET 10 AA310 THR C 107 ALA C 116 -1 N GLY C 115 O VAL C 209 CISPEP 1 GLY A 189 PRO A 190 0 -0.42 CISPEP 2 GLY B 189 PRO B 190 0 -0.11 CISPEP 3 GLY C 189 PRO C 190 0 1.60 CRYST1 72.433 91.824 78.409 90.00 112.70 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013806 0.000000 0.005776 0.00000 SCALE2 0.000000 0.010890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013825 0.00000