HEADER TRANSFERASE 19-MAY-23 8SWZ TITLE PARP4 ART DOMAIN BOUND TO EB47 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: 193 KDA VAULT PROTEIN,ADP-RIBOSYLTRANSFERASE DIPHTHERIA COMPND 5 TOXIN-LIKE 4,ARTD4,PARP-RELATED/IALPHAI-RELATED H5/PROLINE-RICH,PH5P, COMPND 6 POLY [ADP-RIBOSE] POLYMERASE 4,PARP-4,VAULT POLY(ADP-RIBOSE) COMPND 7 POLYMERASE,VPARP; COMPND 8 EC: 2.4.2.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP4, ADPRTL1, KIAA0177, PARPL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PARP FAMILY, ADP-RIBOSYLTRANSFERASE, MARYLATION, VAULT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.FRIGON,J.M.PASCAL REVDAT 3 20-DEC-23 8SWZ 1 JRNL REVDAT 2 29-NOV-23 8SWZ 1 JRNL REVDAT 1 08-NOV-23 8SWZ 0 JRNL AUTH L.FRIGON,J.M.PASCAL JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE PARP1-HOMOLOGY JRNL TITL 2 REGION OF PARP4/VAULT PARP. JRNL REF NUCLEIC ACIDS RES. V. 51 12492 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 37971310 JRNL DOI 10.1093/NAR/GKAD1064 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 69.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 35783 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.180 REMARK 3 FREE R VALUE TEST SET COUNT : 1854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 69.2400 - 7.0500 1.00 2566 169 0.1622 0.1790 REMARK 3 2 7.0500 - 5.6000 1.00 2622 147 0.2331 0.2987 REMARK 3 3 5.6000 - 4.8900 1.00 2600 133 0.1924 0.2423 REMARK 3 4 4.8900 - 4.4400 1.00 2627 143 0.1691 0.2419 REMARK 3 5 4.4400 - 4.1300 1.00 2587 142 0.1769 0.2599 REMARK 3 6 4.1200 - 3.8800 1.00 2624 134 0.1960 0.2281 REMARK 3 7 3.8800 - 3.6900 1.00 2621 140 0.2102 0.2617 REMARK 3 8 3.6900 - 3.5300 1.00 2628 118 0.2478 0.3235 REMARK 3 9 3.5300 - 3.3900 1.00 2602 169 0.2436 0.3258 REMARK 3 10 3.3900 - 3.2700 1.00 2576 140 0.2648 0.2947 REMARK 3 11 3.2700 - 3.1700 1.00 2622 150 0.2918 0.3048 REMARK 3 12 3.1700 - 3.0800 1.00 2570 145 0.3336 0.3539 REMARK 3 13 3.0800 - 3.0000 1.00 2684 124 0.3356 0.4233 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.500 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 5859 REMARK 3 ANGLE : 1.559 7928 REMARK 3 CHIRALITY : 0.102 912 REMARK 3 PLANARITY : 0.015 1035 REMARK 3 DIHEDRAL : 14.489 2237 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 316 THROUGH 335) REMARK 3 ORIGIN FOR THE GROUP (A): 14.3574 -38.6667 53.4076 REMARK 3 T TENSOR REMARK 3 T11: 0.6341 T22: 0.9533 REMARK 3 T33: 0.7814 T12: 0.0253 REMARK 3 T13: -0.0275 T23: -0.2052 REMARK 3 L TENSOR REMARK 3 L11: 5.1313 L22: 3.1438 REMARK 3 L33: 8.2050 L12: 0.9636 REMARK 3 L13: 0.9716 L23: -4.6291 REMARK 3 S TENSOR REMARK 3 S11: -0.0553 S12: 1.0765 S13: 0.2598 REMARK 3 S21: 0.5529 S22: -0.2140 S23: -0.8660 REMARK 3 S31: -0.9536 S32: 0.2286 S33: 0.2584 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN 'A' AND RESID 336 THROUGH 570) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5667 -9.0352 32.4540 REMARK 3 T TENSOR REMARK 3 T11: 0.9740 T22: 0.9172 REMARK 3 T33: 1.0365 T12: -0.0533 REMARK 3 T13: -0.1659 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 2.0209 L22: 2.8132 REMARK 3 L33: 2.4752 L12: 1.3643 REMARK 3 L13: -1.7328 L23: -1.3633 REMARK 3 S TENSOR REMARK 3 S11: 0.2647 S12: -0.2502 S13: -0.0823 REMARK 3 S21: -0.0374 S22: -0.0605 S23: 0.1889 REMARK 3 S31: 0.1115 S32: 0.1222 S33: -0.2224 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 316 THROUGH 335) REMARK 3 ORIGIN FOR THE GROUP (A): 57.8711 41.5099 18.8151 REMARK 3 T TENSOR REMARK 3 T11: 1.4426 T22: 1.1776 REMARK 3 T33: 1.2616 T12: 0.3160 REMARK 3 T13: -0.2050 T23: 0.4367 REMARK 3 L TENSOR REMARK 3 L11: 0.0971 L22: 4.7641 REMARK 3 L33: 1.3433 L12: 0.4685 REMARK 3 L13: 0.2307 L23: 2.5282 REMARK 3 S TENSOR REMARK 3 S11: -0.5443 S12: -0.0363 S13: 1.2812 REMARK 3 S21: 1.2654 S22: 1.2498 S23: 0.1996 REMARK 3 S31: 0.0550 S32: -0.3309 S33: -0.6460 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 336 THROUGH 570) REMARK 3 ORIGIN FOR THE GROUP (A): 49.2698 16.8390 9.1367 REMARK 3 T TENSOR REMARK 3 T11: 0.7173 T22: 0.9590 REMARK 3 T33: 0.7556 T12: 0.1419 REMARK 3 T13: 0.1026 T23: 0.1557 REMARK 3 L TENSOR REMARK 3 L11: 3.7623 L22: 3.8921 REMARK 3 L33: 2.8384 L12: 1.0522 REMARK 3 L13: -0.4760 L23: -1.0677 REMARK 3 S TENSOR REMARK 3 S11: -0.0090 S12: -0.1487 S13: -0.1191 REMARK 3 S21: -0.3501 S22: -0.5066 S23: -0.5129 REMARK 3 S31: 0.4226 S32: 0.8776 S33: 0.4377 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 336 THROUGH 570) REMARK 3 ORIGIN FOR THE GROUP (A): 26.6255 28.8280 45.3554 REMARK 3 T TENSOR REMARK 3 T11: 0.8268 T22: 0.9536 REMARK 3 T33: 0.9007 T12: -0.2086 REMARK 3 T13: 0.0884 T23: -0.0605 REMARK 3 L TENSOR REMARK 3 L11: 2.7445 L22: 2.0991 REMARK 3 L33: 5.4524 L12: -1.4758 REMARK 3 L13: -0.8628 L23: 1.5100 REMARK 3 S TENSOR REMARK 3 S11: 0.0319 S12: -0.4733 S13: -0.1063 REMARK 3 S21: -0.1692 S22: 0.2535 S23: -0.0719 REMARK 3 S31: -0.2466 S32: 0.6533 S33: -0.2447 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN 'C' AND RESID 316 THROUGH 335) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9391 53.4679 30.7112 REMARK 3 T TENSOR REMARK 3 T11: 2.0287 T22: 1.2734 REMARK 3 T33: 2.0255 T12: 0.2642 REMARK 3 T13: 0.0851 T23: -0.1536 REMARK 3 L TENSOR REMARK 3 L11: 1.4005 L22: 6.7412 REMARK 3 L33: 0.1018 L12: 2.9542 REMARK 3 L13: -0.0023 L23: -0.2443 REMARK 3 S TENSOR REMARK 3 S11: -1.0221 S12: 0.3676 S13: 1.1084 REMARK 3 S21: 1.1589 S22: 0.5917 S23: -0.3412 REMARK 3 S31: 1.1244 S32: 0.4307 S33: 0.5331 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SWZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274472. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.12 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35783 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 69.240 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.18 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : 2.02200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2M SODIUM CITRATE REMARK 280 TRIBASIC DIHYDRATE, 800UM EB47, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.30650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.30650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 58.42400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.42950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 58.42400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.42950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.30650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 58.42400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.42950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.30650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 58.42400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.42950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 718 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 315 REMARK 465 GLY A 359 REMARK 465 SER A 360 REMARK 465 GLY A 361 REMARK 465 SER A 362 REMARK 465 GLY A 363 REMARK 465 GLY A 364 REMARK 465 SER A 365 REMARK 465 LYS A 366 REMARK 465 LYS A 572 REMARK 465 ASP A 573 REMARK 465 SER B 315 REMARK 465 GLY B 357 REMARK 465 SER B 358 REMARK 465 GLY B 359 REMARK 465 SER B 360 REMARK 465 GLY B 361 REMARK 465 SER B 362 REMARK 465 GLY B 363 REMARK 465 GLY B 364 REMARK 465 SER B 365 REMARK 465 LYS B 366 REMARK 465 PRO B 367 REMARK 465 ASN B 368 REMARK 465 VAL B 459 REMARK 465 GLU B 460 REMARK 465 ASP B 461 REMARK 465 ARG B 462 REMARK 465 GLY B 463 REMARK 465 VAL B 464 REMARK 465 GLN B 465 REMARK 465 ARG B 466 REMARK 465 THR B 467 REMARK 465 ILE B 571 REMARK 465 LYS B 572 REMARK 465 ASP B 573 REMARK 465 SER C 315 REMARK 465 GLY C 359 REMARK 465 SER C 360 REMARK 465 GLY C 361 REMARK 465 SER C 362 REMARK 465 GLY C 363 REMARK 465 GLY C 364 REMARK 465 SER C 365 REMARK 465 LYS C 366 REMARK 465 PRO C 367 REMARK 465 ASN C 368 REMARK 465 PRO C 369 REMARK 465 GLU C 460 REMARK 465 ASP C 461 REMARK 465 ARG C 462 REMARK 465 GLY C 463 REMARK 465 ILE C 571 REMARK 465 LYS C 572 REMARK 465 ASP C 573 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP B 480 O1 GOL B 601 1.35 REMARK 500 OD2 ASP A 517 O1 GOL A 601 1.97 REMARK 500 N GLY A 447 O HOH A 701 2.09 REMARK 500 CG2 VAL A 446 O HOH A 701 2.12 REMARK 500 CE LYS C 516 O HOH C 605 2.12 REMARK 500 O HOH A 709 O HOH A 713 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 325 NE ARG C 451 4556 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN C 329 CB - CA - C ANGL. DEV. = -15.7 DEGREES REMARK 500 ASN C 329 N - CA - C ANGL. DEV. = -23.2 DEGREES REMARK 500 SER C 331 N - CA - CB ANGL. DEV. = -9.2 DEGREES REMARK 500 LEU C 333 CB - CA - C ANGL. DEV. = -29.1 DEGREES REMARK 500 SER C 334 N - CA - CB ANGL. DEV. = -22.0 DEGREES REMARK 500 SER C 334 N - CA - C ANGL. DEV. = 19.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 402 63.43 -109.27 REMARK 500 LEU B 333 153.32 -49.11 REMARK 500 ASN C 329 79.87 -100.08 REMARK 500 SER C 334 153.45 -48.44 REMARK 500 GLN C 465 42.48 38.80 REMARK 500 ASN C 471 3.98 -69.53 REMARK 500 SER C 489 77.24 -101.19 REMARK 500 REMARK 500 REMARK: NULL DBREF 8SWZ A 316 356 UNP Q9UKK3 PARP4_HUMAN 242 282 DBREF 8SWZ A 365 573 UNP Q9UKK3 PARP4_HUMAN 365 573 DBREF 8SWZ B 316 356 UNP Q9UKK3 PARP4_HUMAN 242 282 DBREF 8SWZ B 365 573 UNP Q9UKK3 PARP4_HUMAN 365 573 DBREF 8SWZ C 316 356 UNP Q9UKK3 PARP4_HUMAN 242 282 DBREF 8SWZ C 365 573 UNP Q9UKK3 PARP4_HUMAN 365 573 SEQADV 8SWZ SER A 315 UNP Q9UKK3 EXPRESSION TAG SEQADV 8SWZ GLY A 357 UNP Q9UKK3 LINKER SEQADV 8SWZ SER A 358 UNP Q9UKK3 LINKER SEQADV 8SWZ GLY A 359 UNP Q9UKK3 LINKER SEQADV 8SWZ SER A 360 UNP Q9UKK3 LINKER SEQADV 8SWZ GLY A 361 UNP Q9UKK3 LINKER SEQADV 8SWZ SER A 362 UNP Q9UKK3 LINKER SEQADV 8SWZ GLY A 363 UNP Q9UKK3 LINKER SEQADV 8SWZ GLY A 364 UNP Q9UKK3 LINKER SEQADV 8SWZ SER B 315 UNP Q9UKK3 EXPRESSION TAG SEQADV 8SWZ GLY B 357 UNP Q9UKK3 LINKER SEQADV 8SWZ SER B 358 UNP Q9UKK3 LINKER SEQADV 8SWZ GLY B 359 UNP Q9UKK3 LINKER SEQADV 8SWZ SER B 360 UNP Q9UKK3 LINKER SEQADV 8SWZ GLY B 361 UNP Q9UKK3 LINKER SEQADV 8SWZ SER B 362 UNP Q9UKK3 LINKER SEQADV 8SWZ GLY B 363 UNP Q9UKK3 LINKER SEQADV 8SWZ GLY B 364 UNP Q9UKK3 LINKER SEQADV 8SWZ SER C 315 UNP Q9UKK3 EXPRESSION TAG SEQADV 8SWZ GLY C 357 UNP Q9UKK3 LINKER SEQADV 8SWZ SER C 358 UNP Q9UKK3 LINKER SEQADV 8SWZ GLY C 359 UNP Q9UKK3 LINKER SEQADV 8SWZ SER C 360 UNP Q9UKK3 LINKER SEQADV 8SWZ GLY C 361 UNP Q9UKK3 LINKER SEQADV 8SWZ SER C 362 UNP Q9UKK3 LINKER SEQADV 8SWZ GLY C 363 UNP Q9UKK3 LINKER SEQADV 8SWZ GLY C 364 UNP Q9UKK3 LINKER SEQRES 1 A 259 SER SER GLU GLN LEU GLN ALA LEU LEU LEU GLU GLU VAL SEQRES 2 A 259 MET ASN SER SER THR LEU SER GLN GLU VAL SER ASP LEU SEQRES 3 A 259 VAL GLU MET ILE TRP ALA GLU ALA LEU GLY HIS LEU GLU SEQRES 4 A 259 HIS MET LEU GLY SER GLY SER GLY SER GLY GLY SER LYS SEQRES 5 A 259 PRO ASN PRO PRO SER LEU ALA LYS TYR ARG ALA LEU ARG SEQRES 6 A 259 CYS LYS ILE GLU HIS VAL GLU GLN ASN THR GLU GLU PHE SEQRES 7 A 259 LEU ARG VAL ARG LYS GLU VAL LEU GLN ASN HIS HIS SER SEQRES 8 A 259 LYS SER PRO VAL ASP VAL LEU GLN ILE PHE ARG VAL GLY SEQRES 9 A 259 ARG VAL ASN GLU THR THR GLU PHE LEU SER LYS LEU GLY SEQRES 10 A 259 ASN VAL ARG PRO LEU LEU HIS GLY SER PRO VAL GLN ASN SEQRES 11 A 259 ILE VAL GLY ILE LEU CYS ARG GLY LEU LEU LEU PRO LYS SEQRES 12 A 259 VAL VAL GLU ASP ARG GLY VAL GLN ARG THR ASP VAL GLY SEQRES 13 A 259 ASN LEU GLY SER GLY ILE TYR PHE SER ASP SER LEU SER SEQRES 14 A 259 THR SER ILE LYS TYR SER HIS PRO GLY GLU THR ASP GLY SEQRES 15 A 259 THR ARG LEU LEU LEU ILE CYS ASP VAL ALA LEU GLY LYS SEQRES 16 A 259 CYS MET ASP LEU HIS GLU LYS ASP PHE SER LEU THR GLU SEQRES 17 A 259 ALA PRO PRO GLY TYR ASP SER VAL HIS GLY VAL SER GLN SEQRES 18 A 259 THR ALA SER VAL THR THR ASP PHE GLU ASP ASP GLU PHE SEQRES 19 A 259 VAL VAL TYR LYS THR ASN GLN VAL LYS MET LYS TYR ILE SEQRES 20 A 259 ILE LYS PHE SER MET PRO GLY ASP GLN ILE LYS ASP SEQRES 1 B 259 SER SER GLU GLN LEU GLN ALA LEU LEU LEU GLU GLU VAL SEQRES 2 B 259 MET ASN SER SER THR LEU SER GLN GLU VAL SER ASP LEU SEQRES 3 B 259 VAL GLU MET ILE TRP ALA GLU ALA LEU GLY HIS LEU GLU SEQRES 4 B 259 HIS MET LEU GLY SER GLY SER GLY SER GLY GLY SER LYS SEQRES 5 B 259 PRO ASN PRO PRO SER LEU ALA LYS TYR ARG ALA LEU ARG SEQRES 6 B 259 CYS LYS ILE GLU HIS VAL GLU GLN ASN THR GLU GLU PHE SEQRES 7 B 259 LEU ARG VAL ARG LYS GLU VAL LEU GLN ASN HIS HIS SER SEQRES 8 B 259 LYS SER PRO VAL ASP VAL LEU GLN ILE PHE ARG VAL GLY SEQRES 9 B 259 ARG VAL ASN GLU THR THR GLU PHE LEU SER LYS LEU GLY SEQRES 10 B 259 ASN VAL ARG PRO LEU LEU HIS GLY SER PRO VAL GLN ASN SEQRES 11 B 259 ILE VAL GLY ILE LEU CYS ARG GLY LEU LEU LEU PRO LYS SEQRES 12 B 259 VAL VAL GLU ASP ARG GLY VAL GLN ARG THR ASP VAL GLY SEQRES 13 B 259 ASN LEU GLY SER GLY ILE TYR PHE SER ASP SER LEU SER SEQRES 14 B 259 THR SER ILE LYS TYR SER HIS PRO GLY GLU THR ASP GLY SEQRES 15 B 259 THR ARG LEU LEU LEU ILE CYS ASP VAL ALA LEU GLY LYS SEQRES 16 B 259 CYS MET ASP LEU HIS GLU LYS ASP PHE SER LEU THR GLU SEQRES 17 B 259 ALA PRO PRO GLY TYR ASP SER VAL HIS GLY VAL SER GLN SEQRES 18 B 259 THR ALA SER VAL THR THR ASP PHE GLU ASP ASP GLU PHE SEQRES 19 B 259 VAL VAL TYR LYS THR ASN GLN VAL LYS MET LYS TYR ILE SEQRES 20 B 259 ILE LYS PHE SER MET PRO GLY ASP GLN ILE LYS ASP SEQRES 1 C 259 SER SER GLU GLN LEU GLN ALA LEU LEU LEU GLU GLU VAL SEQRES 2 C 259 MET ASN SER SER THR LEU SER GLN GLU VAL SER ASP LEU SEQRES 3 C 259 VAL GLU MET ILE TRP ALA GLU ALA LEU GLY HIS LEU GLU SEQRES 4 C 259 HIS MET LEU GLY SER GLY SER GLY SER GLY GLY SER LYS SEQRES 5 C 259 PRO ASN PRO PRO SER LEU ALA LYS TYR ARG ALA LEU ARG SEQRES 6 C 259 CYS LYS ILE GLU HIS VAL GLU GLN ASN THR GLU GLU PHE SEQRES 7 C 259 LEU ARG VAL ARG LYS GLU VAL LEU GLN ASN HIS HIS SER SEQRES 8 C 259 LYS SER PRO VAL ASP VAL LEU GLN ILE PHE ARG VAL GLY SEQRES 9 C 259 ARG VAL ASN GLU THR THR GLU PHE LEU SER LYS LEU GLY SEQRES 10 C 259 ASN VAL ARG PRO LEU LEU HIS GLY SER PRO VAL GLN ASN SEQRES 11 C 259 ILE VAL GLY ILE LEU CYS ARG GLY LEU LEU LEU PRO LYS SEQRES 12 C 259 VAL VAL GLU ASP ARG GLY VAL GLN ARG THR ASP VAL GLY SEQRES 13 C 259 ASN LEU GLY SER GLY ILE TYR PHE SER ASP SER LEU SER SEQRES 14 C 259 THR SER ILE LYS TYR SER HIS PRO GLY GLU THR ASP GLY SEQRES 15 C 259 THR ARG LEU LEU LEU ILE CYS ASP VAL ALA LEU GLY LYS SEQRES 16 C 259 CYS MET ASP LEU HIS GLU LYS ASP PHE SER LEU THR GLU SEQRES 17 C 259 ALA PRO PRO GLY TYR ASP SER VAL HIS GLY VAL SER GLN SEQRES 18 C 259 THR ALA SER VAL THR THR ASP PHE GLU ASP ASP GLU PHE SEQRES 19 C 259 VAL VAL TYR LYS THR ASN GLN VAL LYS MET LYS TYR ILE SEQRES 20 C 259 ILE LYS PHE SER MET PRO GLY ASP GLN ILE LYS ASP HET GOL A 601 6 HET UHB A 602 39 HET GOL B 601 6 HET UHB B 602 39 HETNAM GOL GLYCEROL HETNAM UHB 2-[4-[(2S,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 UHB BIS(OXIDANYL)OXOLAN-2-YL]CARBONYLPIPERAZIN-1-YL]-N-(1- HETNAM 3 UHB OXIDANYLIDENE-2,3-DIHYDROISOINDOL-4-YL)ETHANAMIDE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 UHB 2(C24 H27 N9 O6) FORMUL 8 HOH *35(H2 O) HELIX 1 AA1 SER A 316 SER A 331 1 16 HELIX 2 AA2 SER A 334 GLY A 357 1 24 HELIX 3 AA3 SER A 371 ALA A 377 1 7 HELIX 4 AA4 THR A 389 GLN A 401 1 13 HELIX 5 AA5 ASN A 421 PHE A 426 1 6 HELIX 6 AA6 LEU A 427 GLY A 431 5 5 HELIX 7 AA7 PRO A 441 GLN A 443 5 3 HELIX 8 AA8 ASN A 444 GLY A 452 1 9 HELIX 9 AA9 SER A 481 ILE A 486 1 6 HELIX 10 AB1 LYS A 552 ASN A 554 5 3 HELIX 11 AB2 MET A 566 GLN A 570 5 5 HELIX 12 AB3 GLU B 317 MET B 328 1 12 HELIX 13 AB4 SER B 334 MET B 355 1 22 HELIX 14 AB5 PRO B 370 ALA B 377 1 8 HELIX 15 AB6 THR B 389 LEU B 400 1 12 HELIX 16 AB7 GLN B 401 HIS B 403 5 3 HELIX 17 AB8 ASN B 421 PHE B 426 1 6 HELIX 18 AB9 LEU B 427 GLY B 431 5 5 HELIX 19 AC1 PRO B 441 GLN B 443 5 3 HELIX 20 AC2 ASN B 444 GLY B 452 1 9 HELIX 21 AC3 SER B 481 ILE B 486 1 6 HELIX 22 AC4 LYS B 552 ASN B 554 5 3 HELIX 23 AC5 GLU C 317 MET C 328 1 12 HELIX 24 AC6 SER C 334 MET C 355 1 22 HELIX 25 AC7 SER C 371 ALA C 377 1 7 HELIX 26 AC8 THR C 389 LEU C 400 1 12 HELIX 27 AC9 ASN C 421 PHE C 426 1 6 HELIX 28 AD1 LEU C 427 GLY C 431 5 5 HELIX 29 AD2 GLN C 443 GLY C 452 1 10 HELIX 30 AD3 SER C 481 ILE C 486 1 6 HELIX 31 AD4 LYS C 552 ASN C 554 5 3 SHEET 1 AA1 5 CYS A 380 VAL A 385 0 SHEET 2 AA1 5 ASP A 410 ARG A 419 -1 O ARG A 416 N GLU A 383 SHEET 3 AA1 5 VAL A 556 SER A 565 -1 O LYS A 563 N GLN A 413 SHEET 4 AA1 5 ARG A 498 ALA A 506 -1 N ARG A 498 O PHE A 564 SHEET 5 AA1 5 VAL A 433 GLY A 439 -1 N HIS A 438 O LEU A 501 SHEET 1 AA2 4 ILE A 476 PHE A 478 0 SHEET 2 AA2 4 GLU A 547 VAL A 550 -1 O PHE A 548 N PHE A 478 SHEET 3 AA2 4 SER A 529 GLY A 532 -1 N VAL A 530 O VAL A 549 SHEET 4 AA2 4 CYS A 510 LEU A 513 1 N LEU A 513 O HIS A 531 SHEET 1 AA3 5 CYS B 380 VAL B 385 0 SHEET 2 AA3 5 ASP B 410 ARG B 419 -1 O ILE B 414 N VAL B 385 SHEET 3 AA3 5 VAL B 556 SER B 565 -1 O ILE B 561 N PHE B 415 SHEET 4 AA3 5 ARG B 498 ALA B 506 -1 N ARG B 498 O PHE B 564 SHEET 5 AA3 5 VAL B 433 GLY B 439 -1 N LEU B 436 O CYS B 503 SHEET 1 AA4 4 ILE B 476 PHE B 478 0 SHEET 2 AA4 4 GLU B 547 VAL B 550 -1 O PHE B 548 N PHE B 478 SHEET 3 AA4 4 SER B 529 GLY B 532 -1 N VAL B 530 O VAL B 549 SHEET 4 AA4 4 CYS B 510 LEU B 513 1 N MET B 511 O HIS B 531 SHEET 1 AA5 5 LYS C 381 VAL C 385 0 SHEET 2 AA5 5 ASP C 410 GLY C 418 -1 O ILE C 414 N VAL C 385 SHEET 3 AA5 5 VAL C 556 SER C 565 -1 O ILE C 561 N PHE C 415 SHEET 4 AA5 5 ARG C 498 ALA C 506 -1 N LEU C 500 O ILE C 562 SHEET 5 AA5 5 VAL C 433 GLY C 439 -1 N ARG C 434 O VAL C 505 SHEET 1 AA6 4 ILE C 476 PHE C 478 0 SHEET 2 AA6 4 GLU C 547 VAL C 550 -1 O PHE C 548 N PHE C 478 SHEET 3 AA6 4 SER C 529 GLY C 532 -1 N VAL C 530 O VAL C 549 SHEET 4 AA6 4 CYS C 510 LEU C 513 1 N MET C 511 O HIS C 531 CRYST1 116.848 150.859 104.613 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008558 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006629 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009559 0.00000