HEADER TRANSFERASE 19-MAY-23 8SX2 TITLE PARP4 CATALYTIC DOMAIN BOUND TO EB47 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MONO-ADP-RIBOSYLTRANSFERASE PARP4; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 193 KDA VAULT PROTEIN,ADP-RIBOSYLTRANSFERASE DIPHTHERIA COMPND 5 TOXIN-LIKE 4,ARTD4,PARP-RELATED/IALPHAI-RELATED H5/PROLINE-RICH,PH5P, COMPND 6 POLY [ADP-RIBOSE] POLYMERASE 4,PARP-4,VAULT POLY(ADP-RIBOSE) COMPND 7 POLYMERASE,VPARP; COMPND 8 EC: 2.4.2.-; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP4, ADPRTL1, KIAA0177, PARPL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PARP FAMILY, ADP-RIBOSYLTRANSFERASE, MARYLATION, VAULT, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.FRIGON,J.M.PASCAL REVDAT 3 20-DEC-23 8SX2 1 JRNL REVDAT 2 29-NOV-23 8SX2 1 JRNL REVDAT 1 08-NOV-23 8SX2 0 JRNL AUTH L.FRIGON,J.M.PASCAL JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE PARP1-HOMOLOGY JRNL TITL 2 REGION OF PARP4/VAULT PARP. JRNL REF NUCLEIC ACIDS RES. V. 51 12492 2023 JRNL REFN ESSN 1362-4962 JRNL PMID 37971310 JRNL DOI 10.1093/NAR/GKAD1064 REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.99 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.630 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 29266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.218 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.310 REMARK 3 FREE R VALUE TEST SET COUNT : 1553 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.9900 - 6.4900 0.99 2512 146 0.1916 0.2214 REMARK 3 2 6.4900 - 5.1800 1.00 2499 139 0.2168 0.2254 REMARK 3 3 5.1800 - 4.5400 1.00 2520 149 0.1665 0.1952 REMARK 3 4 4.5300 - 4.1300 1.00 2512 146 0.1797 0.2370 REMARK 3 5 4.1300 - 3.8300 1.00 2517 135 0.2064 0.2816 REMARK 3 6 3.8300 - 3.6100 1.00 2522 154 0.2179 0.2959 REMARK 3 7 3.6100 - 3.4300 1.00 2506 151 0.2419 0.3121 REMARK 3 8 3.4300 - 3.2800 1.00 2506 127 0.2700 0.3342 REMARK 3 9 3.2800 - 3.1500 1.00 2549 155 0.3095 0.4273 REMARK 3 10 3.1500 - 3.0500 1.00 2534 119 0.3217 0.3595 REMARK 3 11 3.0400 - 2.9500 1.00 2536 132 0.3458 0.3720 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.460 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5026 REMARK 3 ANGLE : 1.099 6796 REMARK 3 CHIRALITY : 0.060 793 REMARK 3 PLANARITY : 0.004 906 REMARK 3 DIHEDRAL : 13.271 1957 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 262 THROUGH 394) REMARK 3 ORIGIN FOR THE GROUP (A): -45.2561 24.1898 27.7987 REMARK 3 T TENSOR REMARK 3 T11: 0.8637 T22: 0.9301 REMARK 3 T33: 1.0998 T12: -0.0561 REMARK 3 T13: 0.0202 T23: -0.0736 REMARK 3 L TENSOR REMARK 3 L11: 2.4273 L22: 1.5940 REMARK 3 L33: 2.2793 L12: 0.8945 REMARK 3 L13: 0.7522 L23: 1.1449 REMARK 3 S TENSOR REMARK 3 S11: -0.0528 S12: -0.4103 S13: 0.9565 REMARK 3 S21: -0.0809 S22: -0.1352 S23: 0.1734 REMARK 3 S31: -0.1409 S32: -0.1361 S33: -0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 395 THROUGH 432 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.6558 21.9616 23.5131 REMARK 3 T TENSOR REMARK 3 T11: 0.9591 T22: 0.9278 REMARK 3 T33: 1.0891 T12: -0.1264 REMARK 3 T13: 0.2064 T23: -0.0717 REMARK 3 L TENSOR REMARK 3 L11: 2.5121 L22: 1.0458 REMARK 3 L33: 1.8485 L12: -1.2562 REMARK 3 L13: -0.6605 L23: 0.6379 REMARK 3 S TENSOR REMARK 3 S11: 0.2146 S12: -0.3651 S13: 1.0860 REMARK 3 S21: -0.4197 S22: 0.2866 S23: -0.3975 REMARK 3 S31: -0.6254 S32: 0.7232 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 433 THROUGH 566 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.3311 19.8038 14.7851 REMARK 3 T TENSOR REMARK 3 T11: 1.0868 T22: 0.8833 REMARK 3 T33: 1.0047 T12: -0.1191 REMARK 3 T13: 0.0349 T23: 0.1752 REMARK 3 L TENSOR REMARK 3 L11: 4.1451 L22: 1.7942 REMARK 3 L33: 4.1031 L12: -1.0923 REMARK 3 L13: -1.5420 L23: 2.1157 REMARK 3 S TENSOR REMARK 3 S11: 0.1575 S12: 0.7592 S13: 0.7673 REMARK 3 S21: -0.7862 S22: -0.0005 S23: -0.0465 REMARK 3 S31: -0.8206 S32: 0.1704 S33: 0.0004 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 243 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0091 -21.7799 30.2841 REMARK 3 T TENSOR REMARK 3 T11: 0.8049 T22: 0.7588 REMARK 3 T33: 0.7128 T12: 0.0172 REMARK 3 T13: 0.0714 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 0.2886 L22: 0.1938 REMARK 3 L33: 2.4214 L12: -0.2232 REMARK 3 L13: 0.8169 L23: -0.6876 REMARK 3 S TENSOR REMARK 3 S11: 0.1352 S12: 0.0696 S13: -0.0221 REMARK 3 S21: 0.1426 S22: 0.0934 S23: 0.0583 REMARK 3 S31: 0.1856 S32: 0.0606 S33: 0.0005 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 394 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.4829 -17.9443 21.0662 REMARK 3 T TENSOR REMARK 3 T11: 0.7743 T22: 0.8596 REMARK 3 T33: 0.6612 T12: 0.0583 REMARK 3 T13: 0.0018 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 1.6545 L22: 2.7588 REMARK 3 L33: 0.7150 L12: 0.6782 REMARK 3 L13: 0.2219 L23: -0.2430 REMARK 3 S TENSOR REMARK 3 S11: -0.1325 S12: -0.2691 S13: -0.6386 REMARK 3 S21: -0.0907 S22: -0.1041 S23: -0.3090 REMARK 3 S31: 0.1616 S32: 0.2703 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 395 THROUGH 432 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.1861 -15.0386 20.3187 REMARK 3 T TENSOR REMARK 3 T11: 0.6412 T22: 0.7296 REMARK 3 T33: 0.5408 T12: -0.0125 REMARK 3 T13: 0.0621 T23: -0.0558 REMARK 3 L TENSOR REMARK 3 L11: 3.3179 L22: 3.4587 REMARK 3 L33: 2.2703 L12: -1.1135 REMARK 3 L13: -0.8584 L23: -1.4700 REMARK 3 S TENSOR REMARK 3 S11: 0.1513 S12: -0.5306 S13: -0.2327 REMARK 3 S21: 0.1450 S22: -0.2201 S23: 0.7621 REMARK 3 S31: 0.2611 S32: -0.3806 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 433 THROUGH 563 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8563 -9.9549 11.5384 REMARK 3 T TENSOR REMARK 3 T11: 0.5967 T22: 0.7262 REMARK 3 T33: 0.4950 T12: -0.0685 REMARK 3 T13: 0.0402 T23: -0.0434 REMARK 3 L TENSOR REMARK 3 L11: 2.4622 L22: 6.2394 REMARK 3 L33: 3.0095 L12: -1.0319 REMARK 3 L13: -0.0962 L23: -1.6696 REMARK 3 S TENSOR REMARK 3 S11: 0.0541 S12: 0.3677 S13: 0.0036 REMARK 3 S21: -0.4828 S22: -0.1217 S23: -0.0008 REMARK 3 S31: 0.0967 S32: 0.0818 S33: -0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN 'B' AND RESID 243 THROUGH 261) REMARK 3 ORIGIN FOR THE GROUP (A): -32.5382 30.4505 56.3623 REMARK 3 T TENSOR REMARK 3 T11: 0.8409 T22: 1.2501 REMARK 3 T33: 1.0721 T12: 0.0494 REMARK 3 T13: -0.0584 T23: -0.1025 REMARK 3 L TENSOR REMARK 3 L11: 0.3569 L22: 0.6981 REMARK 3 L33: 0.5545 L12: 0.4840 REMARK 3 L13: 0.4230 L23: 0.6209 REMARK 3 S TENSOR REMARK 3 S11: -0.2006 S12: 1.0796 S13: -1.0413 REMARK 3 S21: 0.6618 S22: -0.1106 S23: -0.0968 REMARK 3 S31: 0.1273 S32: -1.2196 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1158 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29266 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.950 REMARK 200 RESOLUTION RANGE LOW (A) : 65.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.20300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.13 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 14.60 REMARK 200 R MERGE FOR SHELL (I) : 2.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23% PEG3350, 0.1 M BIS-TRIS PH 6.5, REMARK 280 0.2 M MGCL2, AND 600 UM EB47, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 30.95250 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.48900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.13250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.48900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 30.95250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.13250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 241 REMARK 465 THR A 362 REMARK 465 ASN A 363 REMARK 465 LEU A 364 REMARK 465 SER A 365 REMARK 465 LYS A 366 REMARK 465 PRO A 367 REMARK 465 ASP A 461 REMARK 465 ARG A 462 REMARK 465 GLY A 463 REMARK 465 VAL A 464 REMARK 465 GLN A 465 REMARK 465 ARG A 466 REMARK 465 THR A 467 REMARK 465 ASP A 468 REMARK 465 ASP A 569 REMARK 465 GLN A 570 REMARK 465 ILE A 571 REMARK 465 LYS A 572 REMARK 465 ASP A 573 REMARK 465 SER B 241 REMARK 465 GLU B 361 REMARK 465 THR B 362 REMARK 465 ASN B 363 REMARK 465 LEU B 364 REMARK 465 SER B 365 REMARK 465 LYS B 366 REMARK 465 PRO B 367 REMARK 465 ASN B 368 REMARK 465 VAL B 458 REMARK 465 VAL B 459 REMARK 465 GLU B 460 REMARK 465 ASP B 461 REMARK 465 ARG B 462 REMARK 465 GLY B 463 REMARK 465 VAL B 464 REMARK 465 GLN B 465 REMARK 465 ARG B 466 REMARK 465 THR B 467 REMARK 465 ASP B 468 REMARK 465 ASP B 569 REMARK 465 GLN B 570 REMARK 465 ILE B 571 REMARK 465 LYS B 572 REMARK 465 ASP B 573 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 728 O HOH A 729 1.13 REMARK 500 OD2 ASP A 355 O HOH A 701 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 257 91.90 -161.75 REMARK 500 MET A 281 55.93 -141.88 REMARK 500 GLN A 401 -71.13 -135.30 REMARK 500 ASP A 517 99.91 -162.40 REMARK 500 THR A 536 -156.28 -124.92 REMARK 500 MET B 281 57.23 -141.85 REMARK 500 GLN B 401 -71.03 -135.74 REMARK 500 ASP B 517 99.92 -162.81 REMARK 500 THR B 536 -156.23 -124.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 8SX2 A 242 573 UNP Q9UKK3 PARP4_HUMAN 242 573 DBREF 8SX2 B 242 573 UNP Q9UKK3 PARP4_HUMAN 242 573 SEQADV 8SX2 SER A 241 UNP Q9UKK3 EXPRESSION TAG SEQADV 8SX2 SER B 241 UNP Q9UKK3 EXPRESSION TAG SEQRES 1 A 333 SER SER GLU GLN LEU GLN ALA LEU LEU LEU GLU GLU VAL SEQRES 2 A 333 MET ASN SER SER THR LEU SER GLN GLU VAL SER ASP LEU SEQRES 3 A 333 VAL GLU MET ILE TRP ALA GLU ALA LEU GLY HIS LEU GLU SEQRES 4 A 333 HIS MET LEU LEU LYS PRO VAL ASN ARG ILE SER LEU ASN SEQRES 5 A 333 ASP VAL SER LYS ALA GLU GLY ILE LEU LEU LEU VAL LYS SEQRES 6 A 333 ALA ALA LEU LYS ASN GLY GLU THR ALA GLU GLN LEU GLN SEQRES 7 A 333 LYS MET MET THR GLU PHE TYR ARG LEU ILE PRO HIS LYS SEQRES 8 A 333 GLY THR MET PRO LYS GLU VAL ASN LEU GLY LEU LEU ALA SEQRES 9 A 333 LYS LYS ALA ASP LEU CYS GLN LEU ILE ARG ASP MET VAL SEQRES 10 A 333 ASN VAL CYS GLU THR ASN LEU SER LYS PRO ASN PRO PRO SEQRES 11 A 333 SER LEU ALA LYS TYR ARG ALA LEU ARG CYS LYS ILE GLU SEQRES 12 A 333 HIS VAL GLU GLN ASN THR GLU GLU PHE LEU ARG VAL ARG SEQRES 13 A 333 LYS GLU VAL LEU GLN ASN HIS HIS SER LYS SER PRO VAL SEQRES 14 A 333 ASP VAL LEU GLN ILE PHE ARG VAL GLY ARG VAL ASN GLU SEQRES 15 A 333 THR THR GLU PHE LEU SER LYS LEU GLY ASN VAL ARG PRO SEQRES 16 A 333 LEU LEU HIS GLY SER PRO VAL GLN ASN ILE VAL GLY ILE SEQRES 17 A 333 LEU CYS ARG GLY LEU LEU LEU PRO LYS VAL VAL GLU ASP SEQRES 18 A 333 ARG GLY VAL GLN ARG THR ASP VAL GLY ASN LEU GLY SER SEQRES 19 A 333 GLY ILE TYR PHE SER ASP SER LEU SER THR SER ILE LYS SEQRES 20 A 333 TYR SER HIS PRO GLY GLU THR ASP GLY THR ARG LEU LEU SEQRES 21 A 333 LEU ILE CYS ASP VAL ALA LEU GLY LYS CYS MET ASP LEU SEQRES 22 A 333 HIS GLU LYS ASP PHE SER LEU THR GLU ALA PRO PRO GLY SEQRES 23 A 333 TYR ASP SER VAL HIS GLY VAL SER GLN THR ALA SER VAL SEQRES 24 A 333 THR THR ASP PHE GLU ASP ASP GLU PHE VAL VAL TYR LYS SEQRES 25 A 333 THR ASN GLN VAL LYS MET LYS TYR ILE ILE LYS PHE SER SEQRES 26 A 333 MET PRO GLY ASP GLN ILE LYS ASP SEQRES 1 B 333 SER SER GLU GLN LEU GLN ALA LEU LEU LEU GLU GLU VAL SEQRES 2 B 333 MET ASN SER SER THR LEU SER GLN GLU VAL SER ASP LEU SEQRES 3 B 333 VAL GLU MET ILE TRP ALA GLU ALA LEU GLY HIS LEU GLU SEQRES 4 B 333 HIS MET LEU LEU LYS PRO VAL ASN ARG ILE SER LEU ASN SEQRES 5 B 333 ASP VAL SER LYS ALA GLU GLY ILE LEU LEU LEU VAL LYS SEQRES 6 B 333 ALA ALA LEU LYS ASN GLY GLU THR ALA GLU GLN LEU GLN SEQRES 7 B 333 LYS MET MET THR GLU PHE TYR ARG LEU ILE PRO HIS LYS SEQRES 8 B 333 GLY THR MET PRO LYS GLU VAL ASN LEU GLY LEU LEU ALA SEQRES 9 B 333 LYS LYS ALA ASP LEU CYS GLN LEU ILE ARG ASP MET VAL SEQRES 10 B 333 ASN VAL CYS GLU THR ASN LEU SER LYS PRO ASN PRO PRO SEQRES 11 B 333 SER LEU ALA LYS TYR ARG ALA LEU ARG CYS LYS ILE GLU SEQRES 12 B 333 HIS VAL GLU GLN ASN THR GLU GLU PHE LEU ARG VAL ARG SEQRES 13 B 333 LYS GLU VAL LEU GLN ASN HIS HIS SER LYS SER PRO VAL SEQRES 14 B 333 ASP VAL LEU GLN ILE PHE ARG VAL GLY ARG VAL ASN GLU SEQRES 15 B 333 THR THR GLU PHE LEU SER LYS LEU GLY ASN VAL ARG PRO SEQRES 16 B 333 LEU LEU HIS GLY SER PRO VAL GLN ASN ILE VAL GLY ILE SEQRES 17 B 333 LEU CYS ARG GLY LEU LEU LEU PRO LYS VAL VAL GLU ASP SEQRES 18 B 333 ARG GLY VAL GLN ARG THR ASP VAL GLY ASN LEU GLY SER SEQRES 19 B 333 GLY ILE TYR PHE SER ASP SER LEU SER THR SER ILE LYS SEQRES 20 B 333 TYR SER HIS PRO GLY GLU THR ASP GLY THR ARG LEU LEU SEQRES 21 B 333 LEU ILE CYS ASP VAL ALA LEU GLY LYS CYS MET ASP LEU SEQRES 22 B 333 HIS GLU LYS ASP PHE SER LEU THR GLU ALA PRO PRO GLY SEQRES 23 B 333 TYR ASP SER VAL HIS GLY VAL SER GLN THR ALA SER VAL SEQRES 24 B 333 THR THR ASP PHE GLU ASP ASP GLU PHE VAL VAL TYR LYS SEQRES 25 B 333 THR ASN GLN VAL LYS MET LYS TYR ILE ILE LYS PHE SER SEQRES 26 B 333 MET PRO GLY ASP GLN ILE LYS ASP HET UHB A 601 39 HET UHB B 601 39 HETNAM UHB 2-[4-[(2S,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4- HETNAM 2 UHB BIS(OXIDANYL)OXOLAN-2-YL]CARBONYLPIPERAZIN-1-YL]-N-(1- HETNAM 3 UHB OXIDANYLIDENE-2,3-DIHYDROISOINDOL-4-YL)ETHANAMIDE FORMUL 3 UHB 2(C24 H27 N9 O6) FORMUL 5 HOH *37(H2 O) HELIX 1 AA1 SER A 242 ASN A 255 1 14 HELIX 2 AA2 SER A 260 HIS A 280 1 21 HELIX 3 AA3 PRO A 285 ILE A 289 5 5 HELIX 4 AA4 SER A 290 GLY A 311 1 22 HELIX 5 AA5 THR A 313 ILE A 328 1 16 HELIX 6 AA6 ASN A 339 CYS A 360 1 22 HELIX 7 AA7 PRO A 369 ARG A 379 1 11 HELIX 8 AA8 THR A 389 LEU A 400 1 12 HELIX 9 AA9 ARG A 419 GLU A 425 1 7 HELIX 10 AB1 PRO A 441 GLN A 443 5 3 HELIX 11 AB2 ASN A 444 GLY A 452 1 9 HELIX 12 AB3 SER A 481 ILE A 486 1 6 HELIX 13 AB4 LYS A 552 ASN A 554 5 3 HELIX 14 AB5 GLU B 243 ASN B 255 1 13 HELIX 15 AB6 SER B 260 MET B 281 1 22 HELIX 16 AB7 PRO B 285 ILE B 289 5 5 HELIX 17 AB8 SER B 290 GLY B 311 1 22 HELIX 18 AB9 THR B 313 ILE B 328 1 16 HELIX 19 AC1 ASN B 339 CYS B 360 1 22 HELIX 20 AC2 PRO B 370 ARG B 379 1 10 HELIX 21 AC3 THR B 389 LEU B 400 1 12 HELIX 22 AC4 ARG B 419 GLU B 425 1 7 HELIX 23 AC5 PRO B 441 GLN B 443 5 3 HELIX 24 AC6 ASN B 444 GLY B 452 1 9 HELIX 25 AC7 SER B 481 ILE B 486 1 6 HELIX 26 AC8 LYS B 552 ASN B 554 5 3 SHEET 1 AA1 5 GLU A 383 HIS A 384 0 SHEET 2 AA1 5 GLN A 413 ARG A 416 -1 O ARG A 416 N GLU A 383 SHEET 3 AA1 5 VAL A 556 PHE A 564 -1 O LYS A 563 N GLN A 413 SHEET 4 AA1 5 ARG A 498 ALA A 506 -1 N ILE A 502 O LYS A 559 SHEET 5 AA1 5 VAL A 433 SER A 440 -1 N LEU A 436 O CYS A 503 SHEET 1 AA2 4 ILE A 476 PHE A 478 0 SHEET 2 AA2 4 GLU A 547 VAL A 550 -1 O VAL A 550 N ILE A 476 SHEET 3 AA2 4 SER A 529 GLY A 532 -1 N GLY A 532 O GLU A 547 SHEET 4 AA2 4 CYS A 510 LEU A 513 1 N LEU A 513 O HIS A 531 SHEET 1 AA3 5 GLU B 383 HIS B 384 0 SHEET 2 AA3 5 GLN B 413 ARG B 416 -1 O ARG B 416 N GLU B 383 SHEET 3 AA3 5 VAL B 556 PHE B 564 -1 O LYS B 563 N GLN B 413 SHEET 4 AA3 5 ARG B 498 ALA B 506 -1 N ILE B 502 O LYS B 559 SHEET 5 AA3 5 VAL B 433 SER B 440 -1 N LEU B 436 O CYS B 503 SHEET 1 AA4 4 ILE B 476 PHE B 478 0 SHEET 2 AA4 4 GLU B 547 VAL B 550 -1 O VAL B 550 N ILE B 476 SHEET 3 AA4 4 SER B 529 GLY B 532 -1 N GLY B 532 O GLU B 547 SHEET 4 AA4 4 CYS B 510 LEU B 513 1 N LEU B 513 O HIS B 531 CRYST1 61.905 72.265 160.978 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016154 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013838 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006212 0.00000