HEADER ISOMERASE 24-MAY-23 8SY0 TITLE X-RAY CRYSTAL STRUCTURE OF UDP- 2,3-DIACETAMIDO-2,3-DIDEOXY-GLUCURONIC TITLE 2 ACID-2-EPIMERASE FROM THERMUS THERMOPHILUS STRAIN HB27 IN COMPLEX TITLE 3 WITH ITS PRODUCT UDP-2,3-DIACETAMIDO-2,3-DIDEOXY-D-MANNURONIC ACID AT TITLE 4 PH 9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UDP-2,3-DIACETAMIDO-2,3-DIDEOXY-GLUCURONIC ACID-2- COMPND 3 EPIMERASE; COMPND 4 CHAIN: A, B; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27; SOURCE 3 ORGANISM_TAXID: 262724; SOURCE 4 STRAIN: ATCC BAA-163 / DSM 7039 / HB27; SOURCE 5 GENE: TT_C0285; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2 KEYWDS LIPOPOLYSACCHARIDE, O-ANTIGEN, 2-EPIMERASE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.O.MCKNIGHT,J.B.THODEN,H.M.HOLDEN REVDAT 2 18-OCT-23 8SY0 1 JRNL REVDAT 1 13-SEP-23 8SY0 0 JRNL AUTH J.B.THODEN,J.O.MCKNIGHT,C.W.KROFT,J.D.T.JAST,H.M.HOLDEN JRNL TITL STRUCTURAL ANALYSIS OF A BACTERIAL UDP-SUGAR 2-EPIMERASE JRNL TITL 2 REVEALS THE ACTIVE SITE ARCHITECTURE BEFORE AND AFTER JRNL TITL 3 CATALYSIS. JRNL REF J.BIOL.CHEM. V. 299 05200 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37660908 JRNL DOI 10.1016/J.JBC.2023.105200 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0403 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.67 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 42938 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2215 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3056 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.17 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 154 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5676 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.04000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.328 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5910 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5705 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8031 ; 1.624 ; 1.674 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13097 ; 0.547 ; 1.584 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 727 ; 6.687 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ; 9.348 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1009 ;16.616 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 912 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6940 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1340 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2890 ; 2.392 ; 2.478 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2890 ; 2.389 ; 2.478 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3611 ; 3.629 ; 4.440 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3612 ; 3.630 ; 4.442 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3020 ; 3.326 ; 2.908 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3021 ; 3.325 ; 2.908 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4417 ; 5.325 ; 5.137 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6692 ; 6.871 ;25.290 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6693 ; 6.870 ;25.290 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8SY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274745. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JAN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : SEALED TUBE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45153 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 14.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN INCUBATED WITH 5 MM UDP-2,3 REMARK 280 -DIACETAMIDO-2,3-DIDEOXY-GLUCURONIC ACID 18-22% POLY(ETHYLENE REMARK 280 GLYCOL) 3350, 200 MM LICL, 100 MM CHES (PH 9), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.30400 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26530 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 360 REMARK 465 VAL A 361 REMARK 465 GLY A 362 REMARK 465 ILE A 363 REMARK 465 ARG A 364 REMARK 465 THR A 365 REMARK 465 LEU A 366 REMARK 465 GLU A 367 REMARK 465 HIS A 368 REMARK 465 HIS A 369 REMARK 465 HIS A 370 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 ARG B 364 REMARK 465 THR B 365 REMARK 465 LEU B 366 REMARK 465 GLU B 367 REMARK 465 HIS B 368 REMARK 465 HIS B 369 REMARK 465 HIS B 370 REMARK 465 HIS B 371 REMARK 465 HIS B 372 REMARK 465 HIS B 373 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2 REMARK 470 MET B 1 CG SD CE REMARK 470 ILE B 363 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 304 O HOH B 501 2.02 REMARK 500 O HOH A 654 O HOH A 658 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 29 -75.29 -54.20 REMARK 500 TYR A 42 -11.90 -141.37 REMARK 500 SER A 47 -74.90 -153.11 REMARK 500 ASP A 98 24.51 -154.43 REMARK 500 GLU A 120 67.25 75.88 REMARK 500 ALA A 199 127.57 -39.28 REMARK 500 ARG B 12 -64.47 -28.13 REMARK 500 SER B 47 -84.90 -147.52 REMARK 500 GLU B 55 38.46 74.17 REMARK 500 ASP B 98 35.60 -150.38 REMARK 500 GLU B 120 73.17 78.95 REMARK 500 HIS B 208 -6.07 -150.00 REMARK 500 TRP B 307 61.79 -101.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 26 0.12 SIDE CHAIN REMARK 500 ARG A 159 0.09 SIDE CHAIN REMARK 500 ARG A 246 0.12 SIDE CHAIN REMARK 500 ARG A 336 0.16 SIDE CHAIN REMARK 500 ARG B 159 0.09 SIDE CHAIN REMARK 500 ARG B 218 0.09 SIDE CHAIN REMARK 500 ARG B 278 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 257 O REMARK 620 2 VAL A 259 O 83.9 REMARK 620 3 HOH A 606 O 102.2 75.2 REMARK 620 4 HOH A 632 O 83.2 78.1 151.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 170 O REMARK 620 2 ASP B 347 OD1 147.0 REMARK 620 3 HOH B 522 O 105.8 98.6 REMARK 620 N 1 2 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8SXW RELATED DB: PDB REMARK 900 RELATED ID: 8SXY RELATED DB: PDB REMARK 900 RELATED ID: 8SXV RELATED DB: PDB DBREF 8SY0 A 1 365 UNP Q72KY0 Q72KY0_THET2 1 365 DBREF 8SY0 B 1 365 UNP Q72KY0 Q72KY0_THET2 1 365 SEQADV 8SY0 LEU A 366 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 GLU A 367 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 HIS A 368 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 HIS A 369 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 HIS A 370 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 HIS A 371 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 HIS A 372 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 HIS A 373 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 LEU B 366 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 GLU B 367 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 HIS B 368 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 HIS B 369 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 HIS B 370 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 HIS B 371 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 HIS B 372 UNP Q72KY0 EXPRESSION TAG SEQADV 8SY0 HIS B 373 UNP Q72KY0 EXPRESSION TAG SEQRES 1 A 373 MET TRP VAL LYS ILE LEU SER VAL VAL GLY ALA ARG PRO SEQRES 2 A 373 GLN PHE ILE LYS ALA ALA ALA VAL SER ARG VAL LEU ARG SEQRES 3 A 373 ALA SER PRO GLY VAL ARG GLU VAL LEU VAL HIS THR GLY SEQRES 4 A 373 GLN HIS TYR ASP ASP ASN MET SER GLN VAL PHE PHE GLU SEQRES 5 A 373 GLU LEU GLU ILE PRO ASP PRO ASP TYR HIS LEU GLY ILE SEQRES 6 A 373 GLY GLY GLY THR HIS GLY GLN ASN THR GLY ARG MET LEU SEQRES 7 A 373 GLU ALA ILE GLU GLY VAL LEU LEU LYS GLU LYS PRO ASP SEQRES 8 A 373 TRP VAL LEU VAL TYR GLY ASP THR ASP SER THR LEU ALA SEQRES 9 A 373 GLY ALA LEU ALA ALA VAL LYS LEU HIS ILE PRO VAL ALA SEQRES 10 A 373 HIS VAL GLU ALA GLY LEU ARG SER PHE ASN ARG ARG MET SEQRES 11 A 373 PRO GLU GLU ILE ASN ARG ILE LEU THR ASP HIS ALA SER SEQRES 12 A 373 ASP LEU LEU PHE ALA PRO THR GLU THR ALA VAL GLN ASN SEQRES 13 A 373 LEU LEU ARG GLU GLY ILE PRO GLU ASN ARG ILE HIS LEU SEQRES 14 A 373 VAL GLY ASP VAL MET TYR ASP ALA ALA LEU HIS TYR GLY SEQRES 15 A 373 ALA LYS ALA GLU ARG LYS SER ARG ILE LEU GLU ARG LEU SEQRES 16 A 373 GLY LEU GLN ALA LYS GLY TYR VAL LEU ALA THR ILE HIS SEQRES 17 A 373 ARG ALA GLU ASN THR ASP ASP GLN GLU ARG LEU ARG VAL SEQRES 18 A 373 ILE LEU GLU ALA LEU ALA GLU VAL HIS GLN GLU VAL PRO SEQRES 19 A 373 VAL VAL PHE PRO VAL HIS PRO ARG THR ARG LYS ARG ALA SEQRES 20 A 373 GLU ALA PHE GLY LEU GLY SER TYR LEU GLU LYS VAL VAL SEQRES 21 A 373 ALA LEU GLU PRO VAL GLY TYR LEU ASP MET VAL MET LEU SEQRES 22 A 373 GLU LYS ASN ALA ARG LEU ILE VAL THR ASP SER GLY GLY SEQRES 23 A 373 VAL GLN LYS GLU ALA TYR PHE TYR ARG VAL PRO CYS VAL SEQRES 24 A 373 THR VAL ARG GLU GLU THR GLU TRP VAL GLU LEU LEU LYS SEQRES 25 A 373 ALA GLU TRP ASN TYR LEU ALA ALA PRO GLN ASN ALA LYS SEQRES 26 A 373 ASP LEU ALA LEU THR ILE LEU HIS ARG MET ARG THR LYS SEQRES 27 A 373 GLY VAL GLU ILE ASP LEU TYR GLY ASP GLY ARG ALA SER SEQRES 28 A 373 GLN LYS ILE SER ASP PHE LEU ARG LYS VAL GLY ILE ARG SEQRES 29 A 373 THR LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 373 MET TRP VAL LYS ILE LEU SER VAL VAL GLY ALA ARG PRO SEQRES 2 B 373 GLN PHE ILE LYS ALA ALA ALA VAL SER ARG VAL LEU ARG SEQRES 3 B 373 ALA SER PRO GLY VAL ARG GLU VAL LEU VAL HIS THR GLY SEQRES 4 B 373 GLN HIS TYR ASP ASP ASN MET SER GLN VAL PHE PHE GLU SEQRES 5 B 373 GLU LEU GLU ILE PRO ASP PRO ASP TYR HIS LEU GLY ILE SEQRES 6 B 373 GLY GLY GLY THR HIS GLY GLN ASN THR GLY ARG MET LEU SEQRES 7 B 373 GLU ALA ILE GLU GLY VAL LEU LEU LYS GLU LYS PRO ASP SEQRES 8 B 373 TRP VAL LEU VAL TYR GLY ASP THR ASP SER THR LEU ALA SEQRES 9 B 373 GLY ALA LEU ALA ALA VAL LYS LEU HIS ILE PRO VAL ALA SEQRES 10 B 373 HIS VAL GLU ALA GLY LEU ARG SER PHE ASN ARG ARG MET SEQRES 11 B 373 PRO GLU GLU ILE ASN ARG ILE LEU THR ASP HIS ALA SER SEQRES 12 B 373 ASP LEU LEU PHE ALA PRO THR GLU THR ALA VAL GLN ASN SEQRES 13 B 373 LEU LEU ARG GLU GLY ILE PRO GLU ASN ARG ILE HIS LEU SEQRES 14 B 373 VAL GLY ASP VAL MET TYR ASP ALA ALA LEU HIS TYR GLY SEQRES 15 B 373 ALA LYS ALA GLU ARG LYS SER ARG ILE LEU GLU ARG LEU SEQRES 16 B 373 GLY LEU GLN ALA LYS GLY TYR VAL LEU ALA THR ILE HIS SEQRES 17 B 373 ARG ALA GLU ASN THR ASP ASP GLN GLU ARG LEU ARG VAL SEQRES 18 B 373 ILE LEU GLU ALA LEU ALA GLU VAL HIS GLN GLU VAL PRO SEQRES 19 B 373 VAL VAL PHE PRO VAL HIS PRO ARG THR ARG LYS ARG ALA SEQRES 20 B 373 GLU ALA PHE GLY LEU GLY SER TYR LEU GLU LYS VAL VAL SEQRES 21 B 373 ALA LEU GLU PRO VAL GLY TYR LEU ASP MET VAL MET LEU SEQRES 22 B 373 GLU LYS ASN ALA ARG LEU ILE VAL THR ASP SER GLY GLY SEQRES 23 B 373 VAL GLN LYS GLU ALA TYR PHE TYR ARG VAL PRO CYS VAL SEQRES 24 B 373 THR VAL ARG GLU GLU THR GLU TRP VAL GLU LEU LEU LYS SEQRES 25 B 373 ALA GLU TRP ASN TYR LEU ALA ALA PRO GLN ASN ALA LYS SEQRES 26 B 373 ASP LEU ALA LEU THR ILE LEU HIS ARG MET ARG THR LYS SEQRES 27 B 373 GLY VAL GLU ILE ASP LEU TYR GLY ASP GLY ARG ALA SER SEQRES 28 B 373 GLN LYS ILE SER ASP PHE LEU ARG LYS VAL GLY ILE ARG SEQRES 29 B 373 THR LEU GLU HIS HIS HIS HIS HIS HIS HET MJ3 A 401 43 HET EDO A 402 4 HET NA A 403 1 HET MJ3 B 401 43 HET CL B 402 1 HET NA B 403 1 HETNAM MJ3 (2~{S},3~{S},4~{R},5~{S},6~{R})-4,5-DIACETAMIDO-6- HETNAM 2 MJ3 [[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4- HETNAM 3 MJ3 BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-3,4-BIS(OXIDANYL) HETNAM 4 MJ3 OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL- HETNAM 5 MJ3 PHOSPHORYL]OXY-3-OXIDANYL-OXANE-2-CARBOXYLIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION HETSYN MJ3 UDP-2,3-DIACETAMIDO-2,3-DIDEOXY-ALPHA-D-MANNURONIC ACID HETSYN EDO ETHYLENE GLYCOL FORMUL 3 MJ3 2(C19 H28 N4 O18 P2) FORMUL 4 EDO C2 H6 O2 FORMUL 5 NA 2(NA 1+) FORMUL 7 CL CL 1- FORMUL 9 HOH *285(H2 O) HELIX 1 AA1 ALA A 11 ALA A 27 1 17 HELIX 2 AA2 SER A 47 LEU A 54 1 8 HELIX 3 AA3 THR A 69 LYS A 89 1 21 HELIX 4 AA4 THR A 99 LEU A 112 1 14 HELIX 5 AA5 MET A 130 SER A 143 1 14 HELIX 6 AA6 THR A 150 ARG A 159 1 10 HELIX 7 AA7 PRO A 163 ASN A 165 5 3 HELIX 8 AA8 ASP A 172 SER A 189 1 18 HELIX 9 AA9 ARG A 190 LEU A 195 1 6 HELIX 10 AB1 ARG A 209 ASP A 214 1 6 HELIX 11 AB2 ASP A 215 VAL A 233 1 19 HELIX 12 AB3 HIS A 240 PHE A 250 1 11 HELIX 13 AB4 LEU A 252 VAL A 259 1 8 HELIX 14 AB5 GLY A 266 ASN A 276 1 11 HELIX 15 AB6 SER A 284 TYR A 294 1 11 HELIX 16 AB7 TRP A 307 ALA A 313 1 7 HELIX 17 AB8 ASN A 323 MET A 335 1 13 HELIX 18 AB9 ARG A 349 LEU A 358 1 10 HELIX 19 AC1 ALA B 11 ARG B 26 1 16 HELIX 20 AC2 SER B 47 GLU B 55 1 9 HELIX 21 AC3 THR B 69 LYS B 89 1 21 HELIX 22 AC4 THR B 99 LEU B 112 1 14 HELIX 23 AC5 MET B 130 ALA B 142 1 13 HELIX 24 AC6 THR B 150 GLU B 160 1 11 HELIX 25 AC7 PRO B 163 ASN B 165 5 3 HELIX 26 AC8 ASP B 172 SER B 189 1 18 HELIX 27 AC9 ARG B 190 GLY B 196 1 7 HELIX 28 AD1 ARG B 209 ASP B 214 1 6 HELIX 29 AD2 ASP B 215 VAL B 233 1 19 HELIX 30 AD3 HIS B 240 PHE B 250 1 11 HELIX 31 AD4 LEU B 252 LYS B 258 1 7 HELIX 32 AD5 GLY B 266 ASN B 276 1 11 HELIX 33 AD6 SER B 284 TYR B 294 1 11 HELIX 34 AD7 TRP B 307 ALA B 313 1 7 HELIX 35 AD8 ASN B 323 ARG B 336 1 14 HELIX 36 AD9 ARG B 349 LYS B 360 1 12 SHEET 1 AA1 7 TYR A 61 HIS A 62 0 SHEET 2 AA1 7 VAL A 31 HIS A 37 1 N HIS A 37 O TYR A 61 SHEET 3 AA1 7 VAL A 3 VAL A 9 1 N SER A 7 O VAL A 34 SHEET 4 AA1 7 TRP A 92 TYR A 96 1 O LEU A 94 N LEU A 6 SHEET 5 AA1 7 VAL A 116 VAL A 119 1 O VAL A 119 N VAL A 95 SHEET 6 AA1 7 LEU A 145 ALA A 148 1 O PHE A 147 N HIS A 118 SHEET 7 AA1 7 ILE A 167 LEU A 169 1 O HIS A 168 N LEU A 146 SHEET 1 AA2 6 VAL A 260 LEU A 262 0 SHEET 2 AA2 6 VAL A 235 PRO A 238 1 N PHE A 237 O LEU A 262 SHEET 3 AA2 6 VAL A 203 THR A 206 1 N VAL A 203 O VAL A 236 SHEET 4 AA2 6 LEU A 279 THR A 282 1 O VAL A 281 N LEU A 204 SHEET 5 AA2 6 CYS A 298 THR A 300 1 O VAL A 299 N THR A 282 SHEET 6 AA2 6 ASN A 316 LEU A 318 1 O TYR A 317 N THR A 300 SHEET 1 AA3 7 TYR B 61 HIS B 62 0 SHEET 2 AA3 7 VAL B 31 HIS B 37 1 N HIS B 37 O TYR B 61 SHEET 3 AA3 7 VAL B 3 VAL B 9 1 N SER B 7 O VAL B 36 SHEET 4 AA3 7 TRP B 92 TYR B 96 1 O TRP B 92 N LEU B 6 SHEET 5 AA3 7 VAL B 116 VAL B 119 1 O VAL B 119 N VAL B 95 SHEET 6 AA3 7 LEU B 145 ALA B 148 1 O LEU B 145 N HIS B 118 SHEET 7 AA3 7 ILE B 167 LEU B 169 1 O HIS B 168 N LEU B 146 SHEET 1 AA4 6 VAL B 260 LEU B 262 0 SHEET 2 AA4 6 VAL B 235 PRO B 238 1 N VAL B 235 O VAL B 260 SHEET 3 AA4 6 VAL B 203 THR B 206 1 N VAL B 203 O VAL B 236 SHEET 4 AA4 6 LEU B 279 THR B 282 1 O VAL B 281 N LEU B 204 SHEET 5 AA4 6 CYS B 298 THR B 300 1 O VAL B 299 N THR B 282 SHEET 6 AA4 6 ASN B 316 LEU B 318 1 O TYR B 317 N THR B 300 LINK O GLU A 257 NA NA A 403 1555 1555 2.30 LINK O VAL A 259 NA NA A 403 1555 1555 2.42 LINK NA NA A 403 O HOH A 606 1555 1555 2.40 LINK NA NA A 403 O HOH A 632 1555 1555 2.68 LINK O VAL B 170 NA NA B 403 1555 1555 2.68 LINK OD1 ASP B 347 NA NA B 403 1555 1555 2.97 LINK NA NA B 403 O HOH B 522 1555 1555 2.78 CRYST1 56.340 128.608 58.934 90.00 111.24 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017749 0.000000 0.006897 0.00000 SCALE2 0.000000 0.007776 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018204 0.00000