HEADER ISOMERASE 24-MAY-23 8SY0
TITLE X-RAY CRYSTAL STRUCTURE OF UDP- 2,3-DIACETAMIDO-2,3-DIDEOXY-GLUCURONIC
TITLE 2 ACID-2-EPIMERASE FROM THERMUS THERMOPHILUS STRAIN HB27 IN COMPLEX
TITLE 3 WITH ITS PRODUCT UDP-2,3-DIACETAMIDO-2,3-DIDEOXY-D-MANNURONIC ACID AT
TITLE 4 PH 9
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: UDP-2,3-DIACETAMIDO-2,3-DIDEOXY-GLUCURONIC ACID-2-
COMPND 3 EPIMERASE;
COMPND 4 CHAIN: A, B;
COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS HB27;
SOURCE 3 ORGANISM_TAXID: 262724;
SOURCE 4 STRAIN: ATCC BAA-163 / DSM 7039 / HB27;
SOURCE 5 GENE: TT_C0285;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_VARIANT: ROSETTA2
KEYWDS LIPOPOLYSACCHARIDE, O-ANTIGEN, 2-EPIMERASE, ISOMERASE
EXPDTA X-RAY DIFFRACTION
AUTHOR J.O.MCKNIGHT,J.B.THODEN,H.M.HOLDEN
REVDAT 2 18-OCT-23 8SY0 1 JRNL
REVDAT 1 13-SEP-23 8SY0 0
JRNL AUTH J.B.THODEN,J.O.MCKNIGHT,C.W.KROFT,J.D.T.JAST,H.M.HOLDEN
JRNL TITL STRUCTURAL ANALYSIS OF A BACTERIAL UDP-SUGAR 2-EPIMERASE
JRNL TITL 2 REVEALS THE ACTIVE SITE ARCHITECTURE BEFORE AND AFTER
JRNL TITL 3 CATALYSIS.
JRNL REF J.BIOL.CHEM. V. 299 05200 2023
JRNL REFN ESSN 1083-351X
JRNL PMID 37660908
JRNL DOI 10.1016/J.JBC.2023.105200
REMARK 2
REMARK 2 RESOLUTION. 2.10 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0403
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.67
REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1
REMARK 3 NUMBER OF REFLECTIONS : 42938
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.183
REMARK 3 R VALUE (WORKING SET) : 0.180
REMARK 3 FREE R VALUE : 0.231
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900
REMARK 3 FREE R VALUE TEST SET COUNT : 2215
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15
REMARK 3 REFLECTION IN BIN (WORKING SET) : 3056
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.17
REMARK 3 BIN R VALUE (WORKING SET) : 0.3170
REMARK 3 BIN FREE R VALUE SET COUNT : 154
REMARK 3 BIN FREE R VALUE : 0.3070
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 5676
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 93
REMARK 3 SOLVENT ATOMS : 285
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.94
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : -0.04000
REMARK 3 B22 (A**2) : 0.02000
REMARK 3 B33 (A**2) : 0.02000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -0.01000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.221
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.186
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.157
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.328
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5910 ; 0.009 ; 0.012
REMARK 3 BOND LENGTHS OTHERS (A): 5705 ; 0.001 ; 0.016
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8031 ; 1.624 ; 1.674
REMARK 3 BOND ANGLES OTHERS (DEGREES): 13097 ; 0.547 ; 1.584
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 727 ; 6.687 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 53 ; 9.348 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1009 ;16.616 ;10.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 912 ; 0.076 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6940 ; 0.008 ; 0.020
REMARK 3 GENERAL PLANES OTHERS (A): 1340 ; 0.002 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2890 ; 2.392 ; 2.478
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2890 ; 2.389 ; 2.478
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3611 ; 3.629 ; 4.440
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3612 ; 3.630 ; 4.442
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3020 ; 3.326 ; 2.908
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3021 ; 3.325 ; 2.908
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4417 ; 5.325 ; 5.137
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6692 ; 6.871 ;25.290
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6693 ; 6.870 ;25.290
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS
REMARK 4
REMARK 4 8SY0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-MAY-23.
REMARK 100 THE DEPOSITION ID IS D_1000274745.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 27-JAN-23
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 9
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : SEALED TUBE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON II
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT
REMARK 200 DATA SCALING SOFTWARE : SADABS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45153
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100
REMARK 200 RESOLUTION RANGE LOW (A) : 50.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1
REMARK 200 DATA REDUNDANCY : 7.900
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.08200
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.7000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20
REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9
REMARK 200 DATA REDUNDANCY IN SHELL : 3.50
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : 0.36000
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS
REMARK 200 SOFTWARE USED: REFMAC
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 48.09
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN INCUBATED WITH 5 MM UDP-2,3
REMARK 280 -DIACETAMIDO-2,3-DIDEOXY-GLUCURONIC ACID 18-22% POLY(ETHYLENE
REMARK 280 GLYCOL) 3350, 200 MM LICL, 100 MM CHES (PH 9), VAPOR DIFFUSION,
REMARK 280 HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 64.30400
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 3330 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 26530 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 LYS A 360
REMARK 465 VAL A 361
REMARK 465 GLY A 362
REMARK 465 ILE A 363
REMARK 465 ARG A 364
REMARK 465 THR A 365
REMARK 465 LEU A 366
REMARK 465 GLU A 367
REMARK 465 HIS A 368
REMARK 465 HIS A 369
REMARK 465 HIS A 370
REMARK 465 HIS A 371
REMARK 465 HIS A 372
REMARK 465 HIS A 373
REMARK 465 ARG B 364
REMARK 465 THR B 365
REMARK 465 LEU B 366
REMARK 465 GLU B 367
REMARK 465 HIS B 368
REMARK 465 HIS B 369
REMARK 465 HIS B 370
REMARK 465 HIS B 371
REMARK 465 HIS B 372
REMARK 465 HIS B 373
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 359 CG CD NE CZ NH1 NH2
REMARK 470 MET B 1 CG SD CE
REMARK 470 ILE B 363 CG1 CG2 CD1
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OE1 GLU B 304 O HOH B 501 2.02
REMARK 500 O HOH A 654 O HOH A 658 2.13
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A 29 -75.29 -54.20
REMARK 500 TYR A 42 -11.90 -141.37
REMARK 500 SER A 47 -74.90 -153.11
REMARK 500 ASP A 98 24.51 -154.43
REMARK 500 GLU A 120 67.25 75.88
REMARK 500 ALA A 199 127.57 -39.28
REMARK 500 ARG B 12 -64.47 -28.13
REMARK 500 SER B 47 -84.90 -147.52
REMARK 500 GLU B 55 38.46 74.17
REMARK 500 ASP B 98 35.60 -150.38
REMARK 500 GLU B 120 73.17 78.95
REMARK 500 HIS B 208 -6.07 -150.00
REMARK 500 TRP B 307 61.79 -101.02
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: PLANAR GROUPS
REMARK 500
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS
REMARK 500 AN RMSD GREATER THAN THIS VALUE
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 M RES CSSEQI RMS TYPE
REMARK 500 ARG A 26 0.12 SIDE CHAIN
REMARK 500 ARG A 159 0.09 SIDE CHAIN
REMARK 500 ARG A 246 0.12 SIDE CHAIN
REMARK 500 ARG A 336 0.16 SIDE CHAIN
REMARK 500 ARG B 159 0.09 SIDE CHAIN
REMARK 500 ARG B 218 0.09 SIDE CHAIN
REMARK 500 ARG B 278 0.09 SIDE CHAIN
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA A 403 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 257 O
REMARK 620 2 VAL A 259 O 83.9
REMARK 620 3 HOH A 606 O 102.2 75.2
REMARK 620 4 HOH A 632 O 83.2 78.1 151.9
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA B 403 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 VAL B 170 O
REMARK 620 2 ASP B 347 OD1 147.0
REMARK 620 3 HOH B 522 O 105.8 98.6
REMARK 620 N 1 2
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 8SXW RELATED DB: PDB
REMARK 900 RELATED ID: 8SXY RELATED DB: PDB
REMARK 900 RELATED ID: 8SXV RELATED DB: PDB
DBREF 8SY0 A 1 365 UNP Q72KY0 Q72KY0_THET2 1 365
DBREF 8SY0 B 1 365 UNP Q72KY0 Q72KY0_THET2 1 365
SEQADV 8SY0 LEU A 366 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 GLU A 367 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 HIS A 368 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 HIS A 369 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 HIS A 370 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 HIS A 371 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 HIS A 372 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 HIS A 373 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 LEU B 366 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 GLU B 367 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 HIS B 368 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 HIS B 369 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 HIS B 370 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 HIS B 371 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 HIS B 372 UNP Q72KY0 EXPRESSION TAG
SEQADV 8SY0 HIS B 373 UNP Q72KY0 EXPRESSION TAG
SEQRES 1 A 373 MET TRP VAL LYS ILE LEU SER VAL VAL GLY ALA ARG PRO
SEQRES 2 A 373 GLN PHE ILE LYS ALA ALA ALA VAL SER ARG VAL LEU ARG
SEQRES 3 A 373 ALA SER PRO GLY VAL ARG GLU VAL LEU VAL HIS THR GLY
SEQRES 4 A 373 GLN HIS TYR ASP ASP ASN MET SER GLN VAL PHE PHE GLU
SEQRES 5 A 373 GLU LEU GLU ILE PRO ASP PRO ASP TYR HIS LEU GLY ILE
SEQRES 6 A 373 GLY GLY GLY THR HIS GLY GLN ASN THR GLY ARG MET LEU
SEQRES 7 A 373 GLU ALA ILE GLU GLY VAL LEU LEU LYS GLU LYS PRO ASP
SEQRES 8 A 373 TRP VAL LEU VAL TYR GLY ASP THR ASP SER THR LEU ALA
SEQRES 9 A 373 GLY ALA LEU ALA ALA VAL LYS LEU HIS ILE PRO VAL ALA
SEQRES 10 A 373 HIS VAL GLU ALA GLY LEU ARG SER PHE ASN ARG ARG MET
SEQRES 11 A 373 PRO GLU GLU ILE ASN ARG ILE LEU THR ASP HIS ALA SER
SEQRES 12 A 373 ASP LEU LEU PHE ALA PRO THR GLU THR ALA VAL GLN ASN
SEQRES 13 A 373 LEU LEU ARG GLU GLY ILE PRO GLU ASN ARG ILE HIS LEU
SEQRES 14 A 373 VAL GLY ASP VAL MET TYR ASP ALA ALA LEU HIS TYR GLY
SEQRES 15 A 373 ALA LYS ALA GLU ARG LYS SER ARG ILE LEU GLU ARG LEU
SEQRES 16 A 373 GLY LEU GLN ALA LYS GLY TYR VAL LEU ALA THR ILE HIS
SEQRES 17 A 373 ARG ALA GLU ASN THR ASP ASP GLN GLU ARG LEU ARG VAL
SEQRES 18 A 373 ILE LEU GLU ALA LEU ALA GLU VAL HIS GLN GLU VAL PRO
SEQRES 19 A 373 VAL VAL PHE PRO VAL HIS PRO ARG THR ARG LYS ARG ALA
SEQRES 20 A 373 GLU ALA PHE GLY LEU GLY SER TYR LEU GLU LYS VAL VAL
SEQRES 21 A 373 ALA LEU GLU PRO VAL GLY TYR LEU ASP MET VAL MET LEU
SEQRES 22 A 373 GLU LYS ASN ALA ARG LEU ILE VAL THR ASP SER GLY GLY
SEQRES 23 A 373 VAL GLN LYS GLU ALA TYR PHE TYR ARG VAL PRO CYS VAL
SEQRES 24 A 373 THR VAL ARG GLU GLU THR GLU TRP VAL GLU LEU LEU LYS
SEQRES 25 A 373 ALA GLU TRP ASN TYR LEU ALA ALA PRO GLN ASN ALA LYS
SEQRES 26 A 373 ASP LEU ALA LEU THR ILE LEU HIS ARG MET ARG THR LYS
SEQRES 27 A 373 GLY VAL GLU ILE ASP LEU TYR GLY ASP GLY ARG ALA SER
SEQRES 28 A 373 GLN LYS ILE SER ASP PHE LEU ARG LYS VAL GLY ILE ARG
SEQRES 29 A 373 THR LEU GLU HIS HIS HIS HIS HIS HIS
SEQRES 1 B 373 MET TRP VAL LYS ILE LEU SER VAL VAL GLY ALA ARG PRO
SEQRES 2 B 373 GLN PHE ILE LYS ALA ALA ALA VAL SER ARG VAL LEU ARG
SEQRES 3 B 373 ALA SER PRO GLY VAL ARG GLU VAL LEU VAL HIS THR GLY
SEQRES 4 B 373 GLN HIS TYR ASP ASP ASN MET SER GLN VAL PHE PHE GLU
SEQRES 5 B 373 GLU LEU GLU ILE PRO ASP PRO ASP TYR HIS LEU GLY ILE
SEQRES 6 B 373 GLY GLY GLY THR HIS GLY GLN ASN THR GLY ARG MET LEU
SEQRES 7 B 373 GLU ALA ILE GLU GLY VAL LEU LEU LYS GLU LYS PRO ASP
SEQRES 8 B 373 TRP VAL LEU VAL TYR GLY ASP THR ASP SER THR LEU ALA
SEQRES 9 B 373 GLY ALA LEU ALA ALA VAL LYS LEU HIS ILE PRO VAL ALA
SEQRES 10 B 373 HIS VAL GLU ALA GLY LEU ARG SER PHE ASN ARG ARG MET
SEQRES 11 B 373 PRO GLU GLU ILE ASN ARG ILE LEU THR ASP HIS ALA SER
SEQRES 12 B 373 ASP LEU LEU PHE ALA PRO THR GLU THR ALA VAL GLN ASN
SEQRES 13 B 373 LEU LEU ARG GLU GLY ILE PRO GLU ASN ARG ILE HIS LEU
SEQRES 14 B 373 VAL GLY ASP VAL MET TYR ASP ALA ALA LEU HIS TYR GLY
SEQRES 15 B 373 ALA LYS ALA GLU ARG LYS SER ARG ILE LEU GLU ARG LEU
SEQRES 16 B 373 GLY LEU GLN ALA LYS GLY TYR VAL LEU ALA THR ILE HIS
SEQRES 17 B 373 ARG ALA GLU ASN THR ASP ASP GLN GLU ARG LEU ARG VAL
SEQRES 18 B 373 ILE LEU GLU ALA LEU ALA GLU VAL HIS GLN GLU VAL PRO
SEQRES 19 B 373 VAL VAL PHE PRO VAL HIS PRO ARG THR ARG LYS ARG ALA
SEQRES 20 B 373 GLU ALA PHE GLY LEU GLY SER TYR LEU GLU LYS VAL VAL
SEQRES 21 B 373 ALA LEU GLU PRO VAL GLY TYR LEU ASP MET VAL MET LEU
SEQRES 22 B 373 GLU LYS ASN ALA ARG LEU ILE VAL THR ASP SER GLY GLY
SEQRES 23 B 373 VAL GLN LYS GLU ALA TYR PHE TYR ARG VAL PRO CYS VAL
SEQRES 24 B 373 THR VAL ARG GLU GLU THR GLU TRP VAL GLU LEU LEU LYS
SEQRES 25 B 373 ALA GLU TRP ASN TYR LEU ALA ALA PRO GLN ASN ALA LYS
SEQRES 26 B 373 ASP LEU ALA LEU THR ILE LEU HIS ARG MET ARG THR LYS
SEQRES 27 B 373 GLY VAL GLU ILE ASP LEU TYR GLY ASP GLY ARG ALA SER
SEQRES 28 B 373 GLN LYS ILE SER ASP PHE LEU ARG LYS VAL GLY ILE ARG
SEQRES 29 B 373 THR LEU GLU HIS HIS HIS HIS HIS HIS
HET MJ3 A 401 43
HET EDO A 402 4
HET NA A 403 1
HET MJ3 B 401 43
HET CL B 402 1
HET NA B 403 1
HETNAM MJ3 (2~{S},3~{S},4~{R},5~{S},6~{R})-4,5-DIACETAMIDO-6-
HETNAM 2 MJ3 [[[(2~{R},3~{S},4~{R},5~{R})-5-[2,4-
HETNAM 3 MJ3 BIS(OXIDANYLIDENE)PYRIMIDIN-1-YL]-3,4-BIS(OXIDANYL)
HETNAM 4 MJ3 OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]OXY-OXIDANYL-
HETNAM 5 MJ3 PHOSPHORYL]OXY-3-OXIDANYL-OXANE-2-CARBOXYLIC ACID
HETNAM EDO 1,2-ETHANEDIOL
HETNAM NA SODIUM ION
HETNAM CL CHLORIDE ION
HETSYN MJ3 UDP-2,3-DIACETAMIDO-2,3-DIDEOXY-ALPHA-D-MANNURONIC ACID
HETSYN EDO ETHYLENE GLYCOL
FORMUL 3 MJ3 2(C19 H28 N4 O18 P2)
FORMUL 4 EDO C2 H6 O2
FORMUL 5 NA 2(NA 1+)
FORMUL 7 CL CL 1-
FORMUL 9 HOH *285(H2 O)
HELIX 1 AA1 ALA A 11 ALA A 27 1 17
HELIX 2 AA2 SER A 47 LEU A 54 1 8
HELIX 3 AA3 THR A 69 LYS A 89 1 21
HELIX 4 AA4 THR A 99 LEU A 112 1 14
HELIX 5 AA5 MET A 130 SER A 143 1 14
HELIX 6 AA6 THR A 150 ARG A 159 1 10
HELIX 7 AA7 PRO A 163 ASN A 165 5 3
HELIX 8 AA8 ASP A 172 SER A 189 1 18
HELIX 9 AA9 ARG A 190 LEU A 195 1 6
HELIX 10 AB1 ARG A 209 ASP A 214 1 6
HELIX 11 AB2 ASP A 215 VAL A 233 1 19
HELIX 12 AB3 HIS A 240 PHE A 250 1 11
HELIX 13 AB4 LEU A 252 VAL A 259 1 8
HELIX 14 AB5 GLY A 266 ASN A 276 1 11
HELIX 15 AB6 SER A 284 TYR A 294 1 11
HELIX 16 AB7 TRP A 307 ALA A 313 1 7
HELIX 17 AB8 ASN A 323 MET A 335 1 13
HELIX 18 AB9 ARG A 349 LEU A 358 1 10
HELIX 19 AC1 ALA B 11 ARG B 26 1 16
HELIX 20 AC2 SER B 47 GLU B 55 1 9
HELIX 21 AC3 THR B 69 LYS B 89 1 21
HELIX 22 AC4 THR B 99 LEU B 112 1 14
HELIX 23 AC5 MET B 130 ALA B 142 1 13
HELIX 24 AC6 THR B 150 GLU B 160 1 11
HELIX 25 AC7 PRO B 163 ASN B 165 5 3
HELIX 26 AC8 ASP B 172 SER B 189 1 18
HELIX 27 AC9 ARG B 190 GLY B 196 1 7
HELIX 28 AD1 ARG B 209 ASP B 214 1 6
HELIX 29 AD2 ASP B 215 VAL B 233 1 19
HELIX 30 AD3 HIS B 240 PHE B 250 1 11
HELIX 31 AD4 LEU B 252 LYS B 258 1 7
HELIX 32 AD5 GLY B 266 ASN B 276 1 11
HELIX 33 AD6 SER B 284 TYR B 294 1 11
HELIX 34 AD7 TRP B 307 ALA B 313 1 7
HELIX 35 AD8 ASN B 323 ARG B 336 1 14
HELIX 36 AD9 ARG B 349 LYS B 360 1 12
SHEET 1 AA1 7 TYR A 61 HIS A 62 0
SHEET 2 AA1 7 VAL A 31 HIS A 37 1 N HIS A 37 O TYR A 61
SHEET 3 AA1 7 VAL A 3 VAL A 9 1 N SER A 7 O VAL A 34
SHEET 4 AA1 7 TRP A 92 TYR A 96 1 O LEU A 94 N LEU A 6
SHEET 5 AA1 7 VAL A 116 VAL A 119 1 O VAL A 119 N VAL A 95
SHEET 6 AA1 7 LEU A 145 ALA A 148 1 O PHE A 147 N HIS A 118
SHEET 7 AA1 7 ILE A 167 LEU A 169 1 O HIS A 168 N LEU A 146
SHEET 1 AA2 6 VAL A 260 LEU A 262 0
SHEET 2 AA2 6 VAL A 235 PRO A 238 1 N PHE A 237 O LEU A 262
SHEET 3 AA2 6 VAL A 203 THR A 206 1 N VAL A 203 O VAL A 236
SHEET 4 AA2 6 LEU A 279 THR A 282 1 O VAL A 281 N LEU A 204
SHEET 5 AA2 6 CYS A 298 THR A 300 1 O VAL A 299 N THR A 282
SHEET 6 AA2 6 ASN A 316 LEU A 318 1 O TYR A 317 N THR A 300
SHEET 1 AA3 7 TYR B 61 HIS B 62 0
SHEET 2 AA3 7 VAL B 31 HIS B 37 1 N HIS B 37 O TYR B 61
SHEET 3 AA3 7 VAL B 3 VAL B 9 1 N SER B 7 O VAL B 36
SHEET 4 AA3 7 TRP B 92 TYR B 96 1 O TRP B 92 N LEU B 6
SHEET 5 AA3 7 VAL B 116 VAL B 119 1 O VAL B 119 N VAL B 95
SHEET 6 AA3 7 LEU B 145 ALA B 148 1 O LEU B 145 N HIS B 118
SHEET 7 AA3 7 ILE B 167 LEU B 169 1 O HIS B 168 N LEU B 146
SHEET 1 AA4 6 VAL B 260 LEU B 262 0
SHEET 2 AA4 6 VAL B 235 PRO B 238 1 N VAL B 235 O VAL B 260
SHEET 3 AA4 6 VAL B 203 THR B 206 1 N VAL B 203 O VAL B 236
SHEET 4 AA4 6 LEU B 279 THR B 282 1 O VAL B 281 N LEU B 204
SHEET 5 AA4 6 CYS B 298 THR B 300 1 O VAL B 299 N THR B 282
SHEET 6 AA4 6 ASN B 316 LEU B 318 1 O TYR B 317 N THR B 300
LINK O GLU A 257 NA NA A 403 1555 1555 2.30
LINK O VAL A 259 NA NA A 403 1555 1555 2.42
LINK NA NA A 403 O HOH A 606 1555 1555 2.40
LINK NA NA A 403 O HOH A 632 1555 1555 2.68
LINK O VAL B 170 NA NA B 403 1555 1555 2.68
LINK OD1 ASP B 347 NA NA B 403 1555 1555 2.97
LINK NA NA B 403 O HOH B 522 1555 1555 2.78
CRYST1 56.340 128.608 58.934 90.00 111.24 90.00 P 1 21 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.017749 0.000000 0.006897 0.00000
SCALE2 0.000000 0.007776 0.000000 0.00000
SCALE3 0.000000 0.000000 0.018204 0.00000