HEADER TOXIN, HYDROLASE 26-MAY-23 8SZ2 TITLE STX2A1 BOUND TO P8 STALK PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SHIGA-LIKE TOXIN 2 SUBUNIT A; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SLT-2 A SUBUNIT,SLT-2A,SLT-IIA,VEROCYTOTOXIN 2 SUBUNIT A, COMPND 5 VEROTOXIN 2 SUBUNIT A,RRNA N-GLYCOSIDASE 2; COMPND 6 EC: 3.2.2.22; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: P STALK PEPTIDE P8; COMPND 10 CHAIN: P, Q; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O104:H4; SOURCE 3 ORGANISM_TAXID: 1038927; SOURCE 4 GENE: STXA2, STX2A, L0103; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562 KEYWDS SHIGA TOXIN CATALYTIC SUBUNIT, P STALK PEPTIDE, TOXIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.RUDOLPH,X.P.LI REVDAT 1 29-MAY-24 8SZ2 0 JRNL AUTH M.J.RUDOLPH,X.P.LI JRNL TITL STRUCTURE OF SHIGA TOXIN 2 A1 SUBUNIT WITH PEPTIDES THAT JRNL TITL 2 BIND AT THE RIBOSOME BINDING SITE AND INHIBIT ACTIVITY JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.01 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.01 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 36390 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.920 REMARK 3 FREE R VALUE TEST SET COUNT : 1790 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.2200 - 4.7200 0.99 2699 171 0.1686 0.1795 REMARK 3 2 4.7200 - 3.7500 1.00 2682 144 0.1347 0.1669 REMARK 3 3 3.7500 - 3.2800 1.00 2668 151 0.1560 0.2195 REMARK 3 4 3.2800 - 2.9800 1.00 2658 155 0.1743 0.2156 REMARK 3 5 2.9800 - 2.7700 1.00 2674 133 0.1782 0.2188 REMARK 3 6 2.7700 - 2.6100 1.00 2673 132 0.1808 0.2091 REMARK 3 7 2.6100 - 2.4800 1.00 2700 116 0.1781 0.2375 REMARK 3 8 2.4700 - 2.3700 1.00 2652 165 0.1882 0.2613 REMARK 3 9 2.3700 - 2.2800 1.00 2627 144 0.1990 0.2489 REMARK 3 10 2.2800 - 2.2000 1.00 2720 112 0.2122 0.2531 REMARK 3 11 2.2000 - 2.1300 1.00 2651 146 0.2224 0.2752 REMARK 3 12 2.1300 - 2.0700 1.00 2678 133 0.2348 0.2901 REMARK 3 13 2.0700 - 2.0100 0.94 2518 88 0.2730 0.3728 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.010 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4008 REMARK 3 ANGLE : 0.788 5429 REMARK 3 CHIRALITY : 0.055 633 REMARK 3 PLANARITY : 0.008 692 REMARK 3 DIHEDRAL : 12.740 1440 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8671 41.4340 -0.5446 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.1821 REMARK 3 T33: 0.2786 T12: -0.0294 REMARK 3 T13: -0.0277 T23: 0.0147 REMARK 3 L TENSOR REMARK 3 L11: 3.2908 L22: 0.4319 REMARK 3 L33: 1.9000 L12: -0.4319 REMARK 3 L13: -0.3341 L23: 0.2989 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.0071 S13: 0.4016 REMARK 3 S21: 0.0787 S22: 0.0238 S23: -0.1258 REMARK 3 S31: -0.0689 S32: -0.0079 S33: -0.0592 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 28 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9002 46.0291 0.9799 REMARK 3 T TENSOR REMARK 3 T11: 0.2526 T22: 0.2530 REMARK 3 T33: 0.3919 T12: 0.0807 REMARK 3 T13: -0.0318 T23: -0.0377 REMARK 3 L TENSOR REMARK 3 L11: 3.8983 L22: 3.1661 REMARK 3 L33: 8.9956 L12: 0.0529 REMARK 3 L13: -1.9681 L23: 0.1145 REMARK 3 S TENSOR REMARK 3 S11: 0.1247 S12: -0.0520 S13: 0.3457 REMARK 3 S21: 0.1184 S22: -0.2065 S23: 0.1560 REMARK 3 S31: -0.9776 S32: -1.0915 S33: -0.0971 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.8735 35.6570 -7.6439 REMARK 3 T TENSOR REMARK 3 T11: 0.2314 T22: 0.2588 REMARK 3 T33: 0.3239 T12: -0.0494 REMARK 3 T13: -0.0380 T23: -0.0176 REMARK 3 L TENSOR REMARK 3 L11: 3.7265 L22: 3.5427 REMARK 3 L33: 5.5883 L12: 0.3331 REMARK 3 L13: -1.6749 L23: 1.0998 REMARK 3 S TENSOR REMARK 3 S11: 0.1700 S12: -0.0045 S13: -0.0021 REMARK 3 S21: 0.2816 S22: -0.0297 S23: -0.6881 REMARK 3 S31: -0.1601 S32: 0.7268 S33: -0.1522 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 67 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0719 29.8051 -15.8139 REMARK 3 T TENSOR REMARK 3 T11: 0.1913 T22: 0.2236 REMARK 3 T33: 0.2148 T12: 0.0295 REMARK 3 T13: -0.0186 T23: -0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.4587 L22: 2.6347 REMARK 3 L33: 3.1410 L12: 0.6223 REMARK 3 L13: 0.8759 L23: -0.5917 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.2630 S13: -0.0933 REMARK 3 S21: -0.1034 S22: 0.1365 S23: 0.1546 REMARK 3 S31: 0.2308 S32: 0.0267 S33: -0.1809 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 192 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.9856 28.3041 2.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.3432 T22: 0.2416 REMARK 3 T33: 0.2286 T12: -0.0353 REMARK 3 T13: -0.0498 T23: 0.0449 REMARK 3 L TENSOR REMARK 3 L11: 7.4231 L22: 4.3309 REMARK 3 L33: 2.0574 L12: -1.9956 REMARK 3 L13: -0.7994 L23: -0.0233 REMARK 3 S TENSOR REMARK 3 S11: -0.0096 S12: -0.5659 S13: -0.3168 REMARK 3 S21: 0.3413 S22: 0.0894 S23: -0.0294 REMARK 3 S31: 0.1687 S32: 0.0602 S33: -0.0116 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 193 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2265 33.9788 2.1479 REMARK 3 T TENSOR REMARK 3 T11: 0.2581 T22: 0.3902 REMARK 3 T33: 0.2776 T12: -0.0585 REMARK 3 T13: -0.0033 T23: 0.0443 REMARK 3 L TENSOR REMARK 3 L11: 8.3107 L22: 6.2277 REMARK 3 L33: 4.0156 L12: -2.0659 REMARK 3 L13: -0.6097 L23: -0.1374 REMARK 3 S TENSOR REMARK 3 S11: -0.0034 S12: -0.4707 S13: 0.0931 REMARK 3 S21: 0.5978 S22: 0.1814 S23: 0.5912 REMARK 3 S31: -0.0828 S32: -0.5711 S33: -0.0819 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 221 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3195 34.8237 4.9881 REMARK 3 T TENSOR REMARK 3 T11: 0.1820 T22: 0.3218 REMARK 3 T33: 0.2529 T12: 0.0093 REMARK 3 T13: -0.0056 T23: 0.0128 REMARK 3 L TENSOR REMARK 3 L11: 7.1466 L22: 6.7079 REMARK 3 L33: 7.1450 L12: 2.6951 REMARK 3 L13: 0.0434 L23: 0.5928 REMARK 3 S TENSOR REMARK 3 S11: 0.0598 S12: -0.4514 S13: -0.2023 REMARK 3 S21: 0.5303 S22: 0.0494 S23: 0.1942 REMARK 3 S31: 0.0347 S32: -0.6712 S33: -0.1717 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 0 THROUGH 27 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.5531 34.9058 -17.3040 REMARK 3 T TENSOR REMARK 3 T11: 0.2021 T22: 0.2067 REMARK 3 T33: 0.1979 T12: 0.0064 REMARK 3 T13: -0.0028 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 5.8500 L22: 5.9815 REMARK 3 L33: 4.9071 L12: 2.3142 REMARK 3 L13: 0.8100 L23: -1.1402 REMARK 3 S TENSOR REMARK 3 S11: 0.2762 S12: -0.3455 S13: 0.2162 REMARK 3 S21: 0.0240 S22: -0.1829 S23: 0.4098 REMARK 3 S31: 0.0226 S32: -0.3555 S33: -0.1264 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 28 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.5996 43.5343 -18.7015 REMARK 3 T TENSOR REMARK 3 T11: 0.2313 T22: 0.2424 REMARK 3 T33: 0.3222 T12: -0.0138 REMARK 3 T13: 0.0251 T23: 0.0393 REMARK 3 L TENSOR REMARK 3 L11: 4.1472 L22: 4.7973 REMARK 3 L33: 8.3926 L12: -1.2283 REMARK 3 L13: -2.0946 L23: 1.0984 REMARK 3 S TENSOR REMARK 3 S11: 0.2485 S12: 0.3463 S13: 0.4552 REMARK 3 S21: -0.4629 S22: 0.0792 S23: -0.2135 REMARK 3 S31: -0.5649 S32: 0.3987 S33: -0.3883 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0724 29.2774 -8.5522 REMARK 3 T TENSOR REMARK 3 T11: 0.1967 T22: 0.2857 REMARK 3 T33: 0.3014 T12: -0.0404 REMARK 3 T13: -0.0383 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: 3.7234 L22: 3.9366 REMARK 3 L33: 4.0478 L12: 0.6994 REMARK 3 L13: 0.2906 L23: -0.0082 REMARK 3 S TENSOR REMARK 3 S11: 0.1064 S12: -0.1400 S13: -0.0176 REMARK 3 S21: -0.1175 S22: 0.1035 S23: 0.6382 REMARK 3 S31: 0.1796 S32: -0.6643 S33: -0.2251 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1399 22.1941 -2.5020 REMARK 3 T TENSOR REMARK 3 T11: 0.2820 T22: 0.2665 REMARK 3 T33: 0.2777 T12: -0.0865 REMARK 3 T13: -0.0639 T23: 0.0571 REMARK 3 L TENSOR REMARK 3 L11: 3.0866 L22: 2.6104 REMARK 3 L33: 3.3423 L12: -0.2297 REMARK 3 L13: 0.6847 L23: -0.5556 REMARK 3 S TENSOR REMARK 3 S11: 0.1907 S12: -0.3426 S13: -0.3458 REMARK 3 S21: 0.0372 S22: 0.1039 S23: 0.2255 REMARK 3 S31: 0.3674 S32: -0.2208 S33: -0.2610 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 165 THROUGH 220 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.2824 29.4184 -20.7084 REMARK 3 T TENSOR REMARK 3 T11: 0.2997 T22: 0.2265 REMARK 3 T33: 0.1649 T12: 0.0695 REMARK 3 T13: -0.0153 T23: -0.0317 REMARK 3 L TENSOR REMARK 3 L11: 4.3940 L22: 3.7448 REMARK 3 L33: 4.3222 L12: 0.6945 REMARK 3 L13: -0.0999 L23: -0.5301 REMARK 3 S TENSOR REMARK 3 S11: 0.2296 S12: 0.4664 S13: -0.0913 REMARK 3 S21: -0.3652 S22: -0.0401 S23: -0.1771 REMARK 3 S31: 0.4631 S32: 0.3250 S33: -0.0671 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 221 THROUGH 241 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.2033 34.3912 -23.3047 REMARK 3 T TENSOR REMARK 3 T11: 0.2577 T22: 0.3540 REMARK 3 T33: 0.2340 T12: 0.0287 REMARK 3 T13: 0.0337 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 6.6223 L22: 3.5326 REMARK 3 L33: 8.6336 L12: -0.6597 REMARK 3 L13: -1.6803 L23: -0.1112 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: 0.4465 S13: -0.1827 REMARK 3 S21: -0.2730 S22: -0.2234 S23: -0.2470 REMARK 3 S31: 0.1814 S32: 0.4402 S33: -0.0832 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'P' AND (RESID 6 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9664 38.1025 11.9480 REMARK 3 T TENSOR REMARK 3 T11: 0.3854 T22: 0.3752 REMARK 3 T33: 0.4950 T12: -0.0607 REMARK 3 T13: -0.0038 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 3.5147 L22: 7.5157 REMARK 3 L33: 3.6458 L12: -3.8768 REMARK 3 L13: -3.5786 L23: 3.9644 REMARK 3 S TENSOR REMARK 3 S11: 0.5039 S12: 0.3239 S13: -0.2063 REMARK 3 S21: -0.5619 S22: 0.1202 S23: -1.0389 REMARK 3 S31: -0.4932 S32: 0.5752 S33: -0.6626 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'Q' AND (RESID 6 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8373 33.3968 -30.2720 REMARK 3 T TENSOR REMARK 3 T11: 0.4183 T22: 0.3590 REMARK 3 T33: 0.4608 T12: 0.0325 REMARK 3 T13: -0.0571 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 5.4286 L22: 3.8558 REMARK 3 L33: 2.4148 L12: 4.5540 REMARK 3 L13: 0.9239 L23: 0.4925 REMARK 3 S TENSOR REMARK 3 S11: 0.1412 S12: -0.2201 S13: 0.3676 REMARK 3 S21: -0.3279 S22: -0.0307 S23: 0.9587 REMARK 3 S31: -0.5901 S32: -0.0208 S33: -0.1073 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8SZ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-23. REMARK 100 THE DEPOSITION ID IS D_1000274810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 S 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36452 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.010 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 19.20 REMARK 200 R MERGE (I) : 0.21200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.01 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.50 REMARK 200 R MERGE FOR SHELL (I) : 2.99600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6X6H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 400 MM NAH2PO4 PH 4.9 AND 30% PEG 400, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 46.44550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.44550 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 46.44550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, P, Q REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 61 REMARK 465 ALA A 62 REMARK 465 HIS A 242 REMARK 465 HIS A 243 REMARK 465 GLN A 244 REMARK 465 GLY A 245 REMARK 465 ALA A 246 REMARK 465 ARG A 247 REMARK 465 SER A 248 REMARK 465 VAL A 249 REMARK 465 ARG A 250 REMARK 465 GLN B 61 REMARK 465 GLU B 184 REMARK 465 THR B 185 REMARK 465 ALA B 186 REMARK 465 HIS B 242 REMARK 465 HIS B 243 REMARK 465 GLN B 244 REMARK 465 GLY B 245 REMARK 465 ALA B 246 REMARK 465 ARG B 247 REMARK 465 SER B 248 REMARK 465 VAL B 249 REMARK 465 ARG B 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2 PO4 B 303 O HOH B 401 2.11 REMARK 500 O TYR B 60 N ALA B 62 2.11 REMARK 500 OH TYR B 139 O1 PO4 B 303 2.16 REMARK 500 O HOH A 487 O HOH B 460 2.17 REMARK 500 O HOH B 469 O HOH B 477 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 165 -79.94 -111.72 REMARK 500 GLU A 215 -164.60 -129.40 REMARK 500 ASP A 216 -164.30 69.59 REMARK 500 ASP B 58 -156.00 -143.08 REMARK 500 THR B 165 -82.37 -115.82 REMARK 500 GLU B 215 64.36 -162.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 2PE A 301 REMARK 610 2PE A 302 DBREF 8SZ2 A 1 250 UNP P09385 STXA_BP933 23 272 DBREF 8SZ2 B 1 250 UNP P09385 STXA_BP933 23 272 DBREF 8SZ2 P 6 11 PDB 8SZ2 8SZ2 6 11 DBREF 8SZ2 Q 6 11 PDB 8SZ2 8SZ2 6 11 SEQADV 8SZ2 MET A 0 UNP P09385 INITIATING METHIONINE SEQADV 8SZ2 ALA A 77 UNP P09385 TYR 99 CONFLICT SEQADV 8SZ2 MET B 0 UNP P09385 INITIATING METHIONINE SEQADV 8SZ2 ALA B 77 UNP P09385 TYR 99 CONFLICT SEQRES 1 A 251 MET ARG GLU PHE THR ILE ASP PHE SER THR GLN GLN SER SEQRES 2 A 251 TYR VAL SER SER LEU ASN SER ILE ARG THR GLU ILE SER SEQRES 3 A 251 THR PRO LEU GLU HIS ILE SER GLN GLY THR THR SER VAL SEQRES 4 A 251 SER VAL ILE ASN HIS THR PRO PRO GLY SER TYR PHE ALA SEQRES 5 A 251 VAL ASP ILE ARG GLY LEU ASP VAL TYR GLN ALA ARG PHE SEQRES 6 A 251 ASP HIS LEU ARG LEU ILE ILE GLU GLN ASN ASN LEU ALA SEQRES 7 A 251 VAL ALA GLY PHE VAL ASN THR ALA THR ASN THR PHE TYR SEQRES 8 A 251 ARG PHE SER ASP PHE THR HIS ILE SER VAL PRO GLY VAL SEQRES 9 A 251 THR THR VAL SER MET THR THR ASP SER SER TYR THR THR SEQRES 10 A 251 LEU GLN ARG VAL ALA ALA LEU GLU ARG SER GLY MET GLN SEQRES 11 A 251 ILE SER ARG HIS SER LEU VAL SER SER TYR LEU ALA LEU SEQRES 12 A 251 MET GLU PHE SER GLY ASN THR MET THR ARG ASP ALA SER SEQRES 13 A 251 ARG ALA VAL LEU ARG PHE VAL THR VAL THR ALA GLU ALA SEQRES 14 A 251 LEU ARG PHE ARG GLN ILE GLN ARG GLU PHE ARG GLN ALA SEQRES 15 A 251 LEU SER GLU THR ALA PRO VAL TYR THR MET THR PRO GLY SEQRES 16 A 251 ASP VAL ASP LEU THR LEU ASN TRP GLY ARG ILE SER ASN SEQRES 17 A 251 VAL LEU PRO GLU TYR ARG GLY GLU ASP GLY VAL ARG VAL SEQRES 18 A 251 GLY ARG ILE SER PHE ASN ASN ILE SER ALA ILE LEU GLY SEQRES 19 A 251 THR VAL ALA VAL ILE LEU ASN CYS HIS HIS GLN GLY ALA SEQRES 20 A 251 ARG SER VAL ARG SEQRES 1 B 251 MET ARG GLU PHE THR ILE ASP PHE SER THR GLN GLN SER SEQRES 2 B 251 TYR VAL SER SER LEU ASN SER ILE ARG THR GLU ILE SER SEQRES 3 B 251 THR PRO LEU GLU HIS ILE SER GLN GLY THR THR SER VAL SEQRES 4 B 251 SER VAL ILE ASN HIS THR PRO PRO GLY SER TYR PHE ALA SEQRES 5 B 251 VAL ASP ILE ARG GLY LEU ASP VAL TYR GLN ALA ARG PHE SEQRES 6 B 251 ASP HIS LEU ARG LEU ILE ILE GLU GLN ASN ASN LEU ALA SEQRES 7 B 251 VAL ALA GLY PHE VAL ASN THR ALA THR ASN THR PHE TYR SEQRES 8 B 251 ARG PHE SER ASP PHE THR HIS ILE SER VAL PRO GLY VAL SEQRES 9 B 251 THR THR VAL SER MET THR THR ASP SER SER TYR THR THR SEQRES 10 B 251 LEU GLN ARG VAL ALA ALA LEU GLU ARG SER GLY MET GLN SEQRES 11 B 251 ILE SER ARG HIS SER LEU VAL SER SER TYR LEU ALA LEU SEQRES 12 B 251 MET GLU PHE SER GLY ASN THR MET THR ARG ASP ALA SER SEQRES 13 B 251 ARG ALA VAL LEU ARG PHE VAL THR VAL THR ALA GLU ALA SEQRES 14 B 251 LEU ARG PHE ARG GLN ILE GLN ARG GLU PHE ARG GLN ALA SEQRES 15 B 251 LEU SER GLU THR ALA PRO VAL TYR THR MET THR PRO GLY SEQRES 16 B 251 ASP VAL ASP LEU THR LEU ASN TRP GLY ARG ILE SER ASN SEQRES 17 B 251 VAL LEU PRO GLU TYR ARG GLY GLU ASP GLY VAL ARG VAL SEQRES 18 B 251 GLY ARG ILE SER PHE ASN ASN ILE SER ALA ILE LEU GLY SEQRES 19 B 251 THR VAL ALA VAL ILE LEU ASN CYS HIS HIS GLN GLY ALA SEQRES 20 B 251 ARG SER VAL ARG SEQRES 1 P 6 GLY PHE GLY LEU PHE ASP SEQRES 1 Q 6 GLY PHE GLY LEU PHE ASP HET 2PE A 301 17 HET 2PE A 302 8 HET EDO A 303 4 HET EDO A 304 4 HET PO4 A 305 5 HET PO4 A 306 5 HET PO4 A 307 5 HET CL A 308 1 HET EDO B 301 4 HET PO4 B 302 5 HET PO4 B 303 5 HET CL B 304 1 HET CL B 305 1 HETNAM 2PE NONAETHYLENE GLYCOL HETNAM EDO 1,2-ETHANEDIOL HETNAM PO4 PHOSPHATE ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 5 2PE 2(C18 H38 O10) FORMUL 7 EDO 3(C2 H6 O2) FORMUL 9 PO4 5(O4 P 3-) FORMUL 12 CL 3(CL 1-) FORMUL 18 HOH *181(H2 O) HELIX 1 AA1 THR A 9 ILE A 24 1 16 HELIX 2 AA2 SER A 113 ALA A 122 1 10 HELIX 3 AA3 SER A 131 PHE A 145 1 15 HELIX 4 AA4 THR A 151 THR A 165 1 15 HELIX 5 AA5 THR A 165 PHE A 171 1 7 HELIX 6 AA6 PHE A 171 GLN A 180 1 10 HELIX 7 AA7 ALA A 181 SER A 183 5 3 HELIX 8 AA8 THR A 192 ASN A 201 1 10 HELIX 9 AA9 ASN A 201 LEU A 209 1 9 HELIX 10 AB1 PRO A 210 TYR A 212 5 3 HELIX 11 AB2 ASN A 227 VAL A 235 1 9 HELIX 12 AB3 THR B 9 ILE B 24 1 16 HELIX 13 AB4 SER B 113 ALA B 122 1 10 HELIX 14 AB5 SER B 131 PHE B 145 1 15 HELIX 15 AB6 THR B 151 THR B 165 1 15 HELIX 16 AB7 THR B 165 PHE B 171 1 7 HELIX 17 AB8 PHE B 171 GLN B 180 1 10 HELIX 18 AB9 ALA B 181 SER B 183 5 3 HELIX 19 AC1 THR B 192 ASN B 201 1 10 HELIX 20 AC2 ASN B 201 LEU B 209 1 9 HELIX 21 AC3 PRO B 210 TYR B 212 5 3 HELIX 22 AC4 ASN B 227 VAL B 235 1 9 SHEET 1 AA1 6 ARG A 1 ASP A 6 0 SHEET 2 AA1 6 TYR A 49 ARG A 55 1 O ASP A 53 N PHE A 3 SHEET 3 AA1 6 LEU A 67 GLU A 72 -1 O ILE A 71 N PHE A 50 SHEET 4 AA1 6 ALA A 77 ASN A 83 -1 O VAL A 82 N ARG A 68 SHEET 5 AA1 6 THR A 88 ARG A 91 -1 O TYR A 90 N PHE A 81 SHEET 6 AA1 6 THR A 104 SER A 107 1 O THR A 104 N PHE A 89 SHEET 1 AA2 3 SER A 25 GLN A 33 0 SHEET 2 AA2 3 THR A 36 ILE A 41 -1 O VAL A 38 N LEU A 28 SHEET 3 AA2 3 VAL A 237 ILE A 238 1 O ILE A 238 N SER A 39 SHEET 1 AA3 2 GLN A 129 ILE A 130 0 SHEET 2 AA3 2 TYR A 189 THR A 190 -1 O TYR A 189 N ILE A 130 SHEET 1 AA4 2 VAL A 218 VAL A 220 0 SHEET 2 AA4 2 ILE A 223 PHE A 225 -1 O PHE A 225 N VAL A 218 SHEET 1 AA5 6 ARG B 1 ASP B 6 0 SHEET 2 AA5 6 TYR B 49 ARG B 55 1 O ASP B 53 N PHE B 3 SHEET 3 AA5 6 LEU B 67 GLU B 72 -1 O ILE B 71 N PHE B 50 SHEET 4 AA5 6 ALA B 77 ASN B 83 -1 O VAL B 82 N ARG B 68 SHEET 5 AA5 6 THR B 88 ARG B 91 -1 O TYR B 90 N PHE B 81 SHEET 6 AA5 6 THR B 104 SER B 107 1 O THR B 104 N PHE B 89 SHEET 1 AA6 3 SER B 25 GLN B 33 0 SHEET 2 AA6 3 THR B 36 ILE B 41 -1 O VAL B 38 N LEU B 28 SHEET 3 AA6 3 VAL B 237 ILE B 238 1 O ILE B 238 N SER B 39 SHEET 1 AA7 2 GLN B 129 ILE B 130 0 SHEET 2 AA7 2 TYR B 189 THR B 190 -1 O TYR B 189 N ILE B 130 SHEET 1 AA8 2 VAL B 218 VAL B 220 0 SHEET 2 AA8 2 ILE B 223 PHE B 225 -1 O PHE B 225 N VAL B 218 SSBOND 1 CYS A 241 CYS B 241 1555 1555 2.05 CRYST1 102.349 102.349 92.891 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009770 0.005641 0.000000 0.00000 SCALE2 0.000000 0.011282 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010765 0.00000