HEADER OXIDOREDUCTASE 01-JUN-23 8T0N TITLE STRUCTURE OF COMPOUND 4 BOUND TO HUMAN ALDH1A1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE DEHYDROGENASE 1A1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 3-DEOXYGLUCOSONE DEHYDROGENASE,ALDH-E1,ALHDII,ALDEHYDE COMPND 5 DEHYDROGENASE FAMILY 1 MEMBER A1,ALDEHYDE DEHYDROGENASE,CYTOSOLIC, COMPND 6 RETINAL DEHYDROGENASE 1,RALDH 1,RALDH1; COMPND 7 EC: 1.2.1.19,1.2.1.28,1.2.1.3,1.2.1.36; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ALDH1A1, ALDC, ALDH1, PUMB1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: CLONING VECTOR PT7-OR KEYWDS INHIBITOR COMPLEX, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.D.HURLEY REVDAT 1 01-MAY-24 8T0N 0 JRNL AUTH C.TAKAHASHI,M.CHTCHERBININE,B.C.HUDDLE,M.W.WILSON,T.EMMEL, JRNL AUTH 2 R.M.HOHLMAN,S.MCGONIGAL,R.J.BUCKANOVICH,S.D.LARSEN, JRNL AUTH 3 T.D.HURLEY JRNL TITL DEVELOPMENT OF SUBSTITUTED BENZIMIDAZOLES AS INHIBITORS OF JRNL TITL 2 HUMAN ALDEHYDE DEHYDROGENASE 1A ISOENZYMES. JRNL REF CHEM.BIOL.INTERACT. V. 391 10910 2024 JRNL REFN ISSN 0009-2797 JRNL PMID 38364885 JRNL DOI 10.1016/J.CBI.2024.110910 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 42676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.680 REMARK 3 FREE R VALUE TEST SET COUNT : 1999 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6200 - 4.4800 0.98 3102 153 0.1589 0.1795 REMARK 3 2 4.4800 - 3.5600 1.00 2991 147 0.1458 0.1800 REMARK 3 3 3.5600 - 3.1100 1.00 2945 145 0.1744 0.2090 REMARK 3 4 3.1100 - 2.8200 1.00 2939 144 0.1770 0.2640 REMARK 3 5 2.8200 - 2.6200 1.00 2897 141 0.1815 0.2265 REMARK 3 6 2.6200 - 2.4700 1.00 2916 144 0.1752 0.2398 REMARK 3 7 2.4700 - 2.3400 1.00 2881 141 0.1811 0.2267 REMARK 3 8 2.3400 - 2.2400 1.00 2888 143 0.1836 0.2432 REMARK 3 9 2.2400 - 2.1500 1.00 2896 142 0.1899 0.2550 REMARK 3 10 2.1500 - 2.0800 1.00 2865 141 0.2021 0.2393 REMARK 3 11 2.0800 - 2.0100 1.00 2882 141 0.2014 0.3053 REMARK 3 12 2.0100 - 1.9600 1.00 2852 141 0.2207 0.2795 REMARK 3 13 1.9600 - 1.9100 0.99 2841 139 0.2198 0.2506 REMARK 3 14 1.9100 - 1.8600 0.97 2782 137 0.2473 0.3326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.060 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4061 REMARK 3 ANGLE : 1.176 5529 REMARK 3 CHIRALITY : 0.062 607 REMARK 3 PLANARITY : 0.008 712 REMARK 3 DIHEDRAL : 9.755 580 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 121 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.1043 -27.8724 20.5661 REMARK 3 T TENSOR REMARK 3 T11: 0.3753 T22: 0.2550 REMARK 3 T33: 0.4122 T12: 0.1033 REMARK 3 T13: 0.2465 T23: 0.1671 REMARK 3 L TENSOR REMARK 3 L11: 0.5307 L22: 0.3343 REMARK 3 L33: 0.5390 L12: 0.1357 REMARK 3 L13: -0.2612 L23: -0.4078 REMARK 3 S TENSOR REMARK 3 S11: -0.2402 S12: -0.2810 S13: -0.4503 REMARK 3 S21: 0.1950 S22: 0.0365 S23: 0.0708 REMARK 3 S31: 0.1900 S32: -0.0073 S33: 0.0566 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 122 THROUGH 261 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.4132 -14.1811 18.3851 REMARK 3 T TENSOR REMARK 3 T11: 0.2533 T22: 0.2118 REMARK 3 T33: 0.2047 T12: 0.0754 REMARK 3 T13: 0.0966 T23: 0.0517 REMARK 3 L TENSOR REMARK 3 L11: 0.8090 L22: 0.7048 REMARK 3 L33: 0.7597 L12: 0.1846 REMARK 3 L13: -0.2593 L23: -0.3369 REMARK 3 S TENSOR REMARK 3 S11: -0.1888 S12: -0.2464 S13: -0.1594 REMARK 3 S21: 0.2224 S22: 0.0517 S23: 0.1024 REMARK 3 S31: 0.0480 S32: 0.0091 S33: 0.0998 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 262 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.3539 -10.5920 18.2664 REMARK 3 T TENSOR REMARK 3 T11: 0.2752 T22: 0.2502 REMARK 3 T33: 0.3658 T12: 0.0428 REMARK 3 T13: 0.1302 T23: 0.0570 REMARK 3 L TENSOR REMARK 3 L11: 0.4523 L22: 0.5990 REMARK 3 L33: 0.3547 L12: -0.3811 REMARK 3 L13: -0.0821 L23: -0.1962 REMARK 3 S TENSOR REMARK 3 S11: -0.2197 S12: -0.1422 S13: -0.2076 REMARK 3 S21: 0.1870 S22: 0.1686 S23: 0.3295 REMARK 3 S31: 0.0939 S32: -0.1113 S33: -0.0053 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9757 -18.2569 26.8724 REMARK 3 T TENSOR REMARK 3 T11: 0.3713 T22: 0.3738 REMARK 3 T33: 0.5636 T12: 0.0606 REMARK 3 T13: 0.3522 T23: 0.1165 REMARK 3 L TENSOR REMARK 3 L11: 0.6463 L22: 0.4446 REMARK 3 L33: 0.4696 L12: 0.1790 REMARK 3 L13: -0.1448 L23: -0.1803 REMARK 3 S TENSOR REMARK 3 S11: -0.2003 S12: -0.1696 S13: -0.2707 REMARK 3 S21: 0.1810 S22: 0.0072 S23: 0.2025 REMARK 3 S31: 0.2186 S32: -0.1222 S33: -0.1220 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 385 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.4028 -2.1334 20.0444 REMARK 3 T TENSOR REMARK 3 T11: 0.2639 T22: 0.2609 REMARK 3 T33: 0.3654 T12: 0.0934 REMARK 3 T13: 0.1418 T23: 0.0153 REMARK 3 L TENSOR REMARK 3 L11: 0.7579 L22: 0.5993 REMARK 3 L33: 1.4953 L12: 0.6689 REMARK 3 L13: -0.5952 L23: -0.4642 REMARK 3 S TENSOR REMARK 3 S11: -0.1382 S12: -0.2569 S13: 0.0215 REMARK 3 S21: 0.3377 S22: 0.1139 S23: 0.4547 REMARK 3 S31: -0.0857 S32: -0.1662 S33: -0.0208 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 455 THROUGH 501 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.0406 -2.3906 9.9922 REMARK 3 T TENSOR REMARK 3 T11: 0.2342 T22: 0.1867 REMARK 3 T33: 0.2065 T12: 0.0370 REMARK 3 T13: 0.0278 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.7152 L22: 0.1679 REMARK 3 L33: 0.1909 L12: -0.1892 REMARK 3 L13: 0.0347 L23: 0.0672 REMARK 3 S TENSOR REMARK 3 S11: -0.1548 S12: -0.0819 S13: 0.0017 REMARK 3 S21: 0.1244 S22: 0.0836 S23: 0.0642 REMARK 3 S31: 0.0216 S32: -0.0061 S33: 0.0537 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T0N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000274957. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2-6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42689 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 3400, 200 MM NACL, 100 MM BIS REMARK 280 -TRIS, 10 MM YBCL3, PH 6.4, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 109.26700 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 109.26700 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 899 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 PRO A 7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ3 LYS A 193 O PRO A 194 1.15 REMARK 500 HZ2 LYS A 255 O HOH A 704 1.43 REMARK 500 NZ LYS A 193 O PRO A 194 1.72 REMARK 500 OE1 GLU A 58 O HOH A 701 1.98 REMARK 500 O LYS A 362 O HOH A 702 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 303 CB CYS A 303 SG -0.179 REMARK 500 CYS A 464 CB CYS A 464 SG -0.105 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 228 -78.30 -106.94 REMARK 500 SER A 261 -80.26 -98.87 REMARK 500 ASP A 283 103.42 -59.27 REMARK 500 GLN A 301 51.35 -94.54 REMARK 500 SER A 314 -37.50 -36.55 REMARK 500 LYS A 470 -140.30 57.17 REMARK 500 LEU A 478 -173.46 64.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 601 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 761 O REMARK 620 2 HOH A 806 O 59.5 REMARK 620 3 HOH A 885 O 92.4 90.7 REMARK 620 4 HOH A 932 O 61.6 73.0 153.6 REMARK 620 5 HOH A 935 O 53.5 105.1 63.9 99.7 REMARK 620 6 HOH A 936 O 93.4 152.4 95.9 90.2 55.5 REMARK 620 7 HOH A 938 O 125.2 84.1 130.5 69.7 163.7 110.8 REMARK 620 8 HOH A 938 O 140.0 145.3 64.7 138.2 86.6 59.6 93.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 YB A 602 YB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 NAD A 604 O2A REMARK 620 2 NAD A 604 O1N 77.2 REMARK 620 3 HOH A 710 O 119.8 72.8 REMARK 620 4 HOH A 717 O 154.4 89.1 75.1 REMARK 620 5 HOH A 937 O 99.3 169.3 117.3 90.1 REMARK 620 6 HOH A 945 O 141.7 134.4 66.5 61.7 53.4 REMARK 620 N 1 2 3 4 5 DBREF 8T0N A 1 501 UNP P00352 AL1A1_HUMAN 1 501 SEQADV 8T0N SER A 121 UNP P00352 ASN 121 VARIANT SEQRES 1 A 501 MET SER SER SER GLY THR PRO ASP LEU PRO VAL LEU LEU SEQRES 2 A 501 THR ASP LEU LYS ILE GLN TYR THR LYS ILE PHE ILE ASN SEQRES 3 A 501 ASN GLU TRP HIS ASP SER VAL SER GLY LYS LYS PHE PRO SEQRES 4 A 501 VAL PHE ASN PRO ALA THR GLU GLU GLU LEU CYS GLN VAL SEQRES 5 A 501 GLU GLU GLY ASP LYS GLU ASP VAL ASP LYS ALA VAL LYS SEQRES 6 A 501 ALA ALA ARG GLN ALA PHE GLN ILE GLY SER PRO TRP ARG SEQRES 7 A 501 THR MET ASP ALA SER GLU ARG GLY ARG LEU LEU TYR LYS SEQRES 8 A 501 LEU ALA ASP LEU ILE GLU ARG ASP ARG LEU LEU LEU ALA SEQRES 9 A 501 THR MET GLU SER MET ASN GLY GLY LYS LEU TYR SER ASN SEQRES 10 A 501 ALA TYR LEU SER ASP LEU ALA GLY CYS ILE LYS THR LEU SEQRES 11 A 501 ARG TYR CYS ALA GLY TRP ALA ASP LYS ILE GLN GLY ARG SEQRES 12 A 501 THR ILE PRO ILE ASP GLY ASN PHE PHE THR TYR THR ARG SEQRES 13 A 501 HIS GLU PRO ILE GLY VAL CYS GLY GLN ILE ILE PRO TRP SEQRES 14 A 501 ASN PHE PRO LEU VAL MET LEU ILE TRP LYS ILE GLY PRO SEQRES 15 A 501 ALA LEU SER CYS GLY ASN THR VAL VAL VAL LYS PRO ALA SEQRES 16 A 501 GLU GLN THR PRO LEU THR ALA LEU HIS VAL ALA SER LEU SEQRES 17 A 501 ILE LYS GLU ALA GLY PHE PRO PRO GLY VAL VAL ASN ILE SEQRES 18 A 501 VAL PRO GLY TYR GLY PRO THR ALA GLY ALA ALA ILE SER SEQRES 19 A 501 SER HIS MET ASP ILE ASP LYS VAL ALA PHE THR GLY SER SEQRES 20 A 501 THR GLU VAL GLY LYS LEU ILE LYS GLU ALA ALA GLY LYS SEQRES 21 A 501 SER ASN LEU LYS ARG VAL THR LEU GLU LEU GLY GLY LYS SEQRES 22 A 501 SER PRO CYS ILE VAL LEU ALA ASP ALA ASP LEU ASP ASN SEQRES 23 A 501 ALA VAL GLU PHE ALA HIS HIS GLY VAL PHE TYR HIS GLN SEQRES 24 A 501 GLY GLN CYS CYS ILE ALA ALA SER ARG ILE PHE VAL GLU SEQRES 25 A 501 GLU SER ILE TYR ASP GLU PHE VAL ARG ARG SER VAL GLU SEQRES 26 A 501 ARG ALA LYS LYS TYR ILE LEU GLY ASN PRO LEU THR PRO SEQRES 27 A 501 GLY VAL THR GLN GLY PRO GLN ILE ASP LYS GLU GLN TYR SEQRES 28 A 501 ASP LYS ILE LEU ASP LEU ILE GLU SER GLY LYS LYS GLU SEQRES 29 A 501 GLY ALA LYS LEU GLU CYS GLY GLY GLY PRO TRP GLY ASN SEQRES 30 A 501 LYS GLY TYR PHE VAL GLN PRO THR VAL PHE SER ASN VAL SEQRES 31 A 501 THR ASP GLU MET ARG ILE ALA LYS GLU GLU ILE PHE GLY SEQRES 32 A 501 PRO VAL GLN GLN ILE MET LYS PHE LYS SER LEU ASP ASP SEQRES 33 A 501 VAL ILE LYS ARG ALA ASN ASN THR PHE TYR GLY LEU SER SEQRES 34 A 501 ALA GLY VAL PHE THR LYS ASP ILE ASP LYS ALA ILE THR SEQRES 35 A 501 ILE SER SER ALA LEU GLN ALA GLY THR VAL TRP VAL ASN SEQRES 36 A 501 CYS TYR GLY VAL VAL SER ALA GLN CYS PRO PHE GLY GLY SEQRES 37 A 501 PHE LYS MET SER GLY ASN GLY ARG GLU LEU GLY GLU TYR SEQRES 38 A 501 GLY PHE HIS GLU TYR THR GLU VAL LYS THR VAL THR VAL SEQRES 39 A 501 LYS ILE SER GLN LYS ASN SER HET YB A 601 1 HET YB A 602 1 HET Y0B A 603 44 HET NAD A 604 70 HET CL A 605 1 HETNAM YB YTTERBIUM (III) ION HETNAM Y0B 2-METHOXY-6-{[(1-PROPYL-1H-BENZIMIDAZOL-2-YL) HETNAM 2 Y0B AMINO]METHYL}PHENOL HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM CL CHLORIDE ION FORMUL 2 YB 2(YB 3+) FORMUL 4 Y0B C18 H21 N3 O2 FORMUL 5 NAD C21 H27 N7 O14 P2 FORMUL 6 CL CL 1- FORMUL 7 HOH *245(H2 O) HELIX 1 AA1 ASP A 56 PHE A 71 1 16 HELIX 2 AA2 SER A 75 MET A 80 1 6 HELIX 3 AA3 ASP A 81 ASP A 99 1 19 HELIX 4 AA4 ASP A 99 GLY A 112 1 14 HELIX 5 AA5 LEU A 114 SER A 121 1 8 HELIX 6 AA6 SER A 121 ALA A 137 1 17 HELIX 7 AA7 ASP A 138 ILE A 140 5 3 HELIX 8 AA8 PHE A 171 CYS A 186 1 16 HELIX 9 AA9 PRO A 199 GLY A 213 1 15 HELIX 10 AB1 THR A 228 SER A 235 1 8 HELIX 11 AB2 SER A 247 SER A 261 1 15 HELIX 12 AB3 ASP A 283 TYR A 297 1 15 HELIX 13 AB4 HIS A 298 GLN A 301 5 4 HELIX 14 AB5 GLU A 313 LYS A 328 1 16 HELIX 15 AB6 ASP A 347 GLU A 364 1 18 HELIX 16 AB7 MET A 394 GLU A 399 1 6 HELIX 17 AB8 SER A 413 ASN A 423 1 11 HELIX 18 AB9 ASP A 436 LEU A 447 1 12 HELIX 19 AC1 PHE A 469 MET A 471 5 3 HELIX 20 AC2 LEU A 478 HIS A 484 1 7 SHEET 1 AA1 2 ILE A 23 ILE A 25 0 SHEET 2 AA1 2 GLU A 28 HIS A 30 -1 O HIS A 30 N ILE A 23 SHEET 1 AA2 2 LYS A 37 PHE A 41 0 SHEET 2 AA2 2 GLU A 48 GLU A 53 -1 O LEU A 49 N VAL A 40 SHEET 1 AA3 3 THR A 144 ILE A 145 0 SHEET 2 AA3 3 PHE A 151 PRO A 159 -1 O THR A 153 N ILE A 145 SHEET 3 AA3 3 THR A 487 LYS A 495 -1 O VAL A 494 N PHE A 152 SHEET 1 AA4 6 VAL A 219 ILE A 221 0 SHEET 2 AA4 6 THR A 189 LYS A 193 1 N VAL A 192 O ASN A 220 SHEET 3 AA4 6 VAL A 162 ILE A 166 1 N CYS A 163 O THR A 189 SHEET 4 AA4 6 LYS A 241 THR A 245 1 O LYS A 241 N GLY A 164 SHEET 5 AA4 6 ARG A 265 GLU A 269 1 O ARG A 265 N VAL A 242 SHEET 6 AA4 6 GLY A 473 ASN A 474 -1 O ASN A 474 N LEU A 268 SHEET 1 AA5 7 LYS A 367 CYS A 370 0 SHEET 2 AA5 7 THR A 385 SER A 388 -1 O SER A 388 N LYS A 367 SHEET 3 AA5 7 VAL A 405 PHE A 411 1 O GLN A 406 N PHE A 387 SHEET 4 AA5 7 ARG A 308 GLU A 312 1 N ILE A 309 O MET A 409 SHEET 5 AA5 7 PRO A 275 VAL A 278 1 N CYS A 276 O PHE A 310 SHEET 6 AA5 7 SER A 429 PHE A 433 1 O PHE A 433 N ILE A 277 SHEET 7 AA5 7 THR A 451 VAL A 454 1 O TRP A 453 N VAL A 432 SHEET 1 AA6 2 PRO A 374 TRP A 375 0 SHEET 2 AA6 2 PHE A 381 VAL A 382 -1 O PHE A 381 N TRP A 375 LINK YB YB A 601 O HOH A 761 1555 1555 3.04 LINK YB YB A 601 O HOH A 806 1555 1555 2.33 LINK YB YB A 601 O HOH A 885 1555 1555 2.47 LINK YB YB A 601 O HOH A 932 1555 1555 2.34 LINK YB YB A 601 O HOH A 935 1555 1555 2.65 LINK YB YB A 601 O HOH A 936 1555 1555 2.64 LINK YB YB A 601 O HOH A 938 1555 1555 2.66 LINK YB YB A 601 O HOH A 938 1555 8556 2.28 LINK YB YB A 602 O2A NAD A 604 1555 1555 2.58 LINK YB YB A 602 O1N NAD A 604 1555 1555 2.27 LINK YB YB A 602 O HOH A 710 1555 1555 2.37 LINK YB YB A 602 O HOH A 717 1555 1555 2.33 LINK YB YB A 602 O HOH A 937 1555 1555 2.84 LINK YB YB A 602 O HOH A 945 1555 1555 2.95 CRYST1 109.267 109.267 83.168 90.00 90.00 90.00 P 4 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009152 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012024 0.00000