HEADER TRANSFERASE 03-JUN-23 8T1S TITLE STRUCTURE OF THE ALPHA-N-METHYLTRANSFERASE (SONM) AND RIPP PRECURSOR TITLE 2 (SONA WITH QSY DELETION) HETEROMERIC COMPLEX (BOUND TO SAH) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-N-METHYLTRANSFERASE; COMPND 3 CHAIN: A, C; COMPND 4 SYNONYM: SONM; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: EXTRADIOL RING-CLEAVAGE DIOXYGENASE LIGAB LIGA SUBUNIT COMPND 8 DOMAIN-CONTAINING PROTEIN; COMPND 9 CHAIN: B, D; COMPND 10 SYNONYM: RIPP PRECURSOR, SONA; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: SO_1478; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 10 ORGANISM_TAXID: 211586; SOURCE 11 STRAIN: MR-1; SOURCE 12 GENE: SO_1479; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-N-METHYLTRANSFERASE, BOROSIN, NATURAL PRODUCTS., TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.K.CRONE,T.JOMORI,F.S.MILLER,J.GRALNICK,M.ELIAS,M.F.FREEMAN REVDAT 2 20-NOV-24 8T1S 1 REMARK REVDAT 1 22-NOV-23 8T1S 0 JRNL AUTH K.K.CRONE,T.JOMORI,F.S.MILLER,J.A.GRALNICK,M.H.ELIAS, JRNL AUTH 2 M.F.FREEMAN JRNL TITL RIPP ENZYME HETEROCOMPLEX STRUCTURE-GUIDED DISCOVERY OF A JRNL TITL 2 BACTERIAL BOROSIN ALPHA- N -METHYLATED PEPTIDE NATURAL JRNL TITL 3 PRODUCT. JRNL REF RSC CHEM BIOL V. 4 804 2023 JRNL REFN ESSN 2633-0679 JRNL PMID 37799586 JRNL DOI 10.1039/D3CB00093A REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0352 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.28 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 42244 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2224 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3123 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2550 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4980 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 544 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : 0.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.221 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.177 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.130 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.651 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5208 ; 0.002 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 4734 ; 0.011 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7090 ; 0.553 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11056 ; 0.292 ; 1.561 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 648 ; 5.214 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ; 1.641 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 852 ; 9.746 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 796 ; 0.028 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5889 ; 0.002 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 977 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2588 ; 1.857 ; 2.490 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2587 ; 1.855 ; 2.490 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3227 ; 2.686 ; 3.716 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3228 ; 2.686 ; 3.717 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2620 ; 3.024 ; 2.892 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2621 ; 3.024 ; 2.892 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3859 ; 4.656 ; 4.184 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6123 ; 7.407 ;41.128 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6016 ; 7.213 ;39.031 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8T1S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000274943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 X 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44465 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 52.280 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.410 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.8900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 240 MM SODIUM MALONATE PH 5-5.5, 8-12% REMARK 280 PEG 3350 AT A 1-1 OR 2-1 RATIO OF PROTEIN TO MOTHER LIQUOR. REMARK 280 PROTEIN CONCENTRATION IS 20MG/ML., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.36500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -120.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 HIS B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 MET B 8 REMARK 465 SER B 9 REMARK 465 LEU B 60 REMARK 465 SER B 61 REMARK 465 GLY B 62 REMARK 465 ASP B 63 REMARK 465 SER B 64 REMARK 465 ASP B 75 REMARK 465 MET D 1 REMARK 465 HIS D 2 REMARK 465 HIS D 3 REMARK 465 HIS D 4 REMARK 465 HIS D 5 REMARK 465 HIS D 6 REMARK 465 HIS D 7 REMARK 465 MET D 8 REMARK 465 SER D 9 REMARK 465 GLY D 10 REMARK 465 SER D 61 REMARK 465 GLY D 62 REMARK 465 ASP D 63 REMARK 465 SER D 64 REMARK 465 SER D 65 REMARK 465 TYR D 66 REMARK 465 ASN D 73 REMARK 465 GLY D 74 REMARK 465 ASP D 75 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE1 HIS A 142 O HOH A 403 1.84 REMARK 500 OG SER A 182 OD1 ASP A 184 2.11 REMARK 500 O HOH A 528 O HOH A 602 2.13 REMARK 500 O HOH A 581 O HOH A 596 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 -38.37 79.33 REMARK 500 LEU A 176 31.29 71.26 REMARK 500 THR A 181 -167.45 -105.13 REMARK 500 ASN B 31 77.50 -150.53 REMARK 500 ALA C 14 -37.37 77.56 REMARK 500 THR C 181 -159.32 -95.82 REMARK 500 ASN D 31 82.17 -151.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 623 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A 624 DISTANCE = 7.59 ANGSTROMS REMARK 525 HOH A 625 DISTANCE = 8.74 ANGSTROMS REMARK 525 HOH C 612 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH C 613 DISTANCE = 7.68 ANGSTROMS REMARK 525 HOH C 614 DISTANCE = 9.51 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 126 OE2 REMARK 620 2 HIS A 142 NE2 97.1 REMARK 620 3 HOH A 422 O 100.1 131.1 REMARK 620 4 GLU C 126 OE2 80.2 119.6 108.4 REMARK 620 5 HIS C 142 NE2 162.8 78.7 95.0 87.4 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7LTE RELATED DB: PDB REMARK 900 STRUCTURE OF THE WILD-TYPE COMPLEX BOUND TO SAH REMARK 900 RELATED ID: 7LTC RELATED DB: PDB REMARK 900 STRUCTURE OF THE WILD-TYPE COMPLEX WITH NO COFACTOR DBREF 8T1S A 2 263 UNP Q8EGW3 Q8EGW3_SHEON 2 263 DBREF 8T1S B 8 75 UNP Q8EGW2 Q8EGW2_SHEON 1 71 DBREF 8T1S C 2 263 UNP Q8EGW3 Q8EGW3_SHEON 2 263 DBREF 8T1S D 8 75 UNP Q8EGW2 Q8EGW2_SHEON 1 71 SEQADV 8T1S MET B 1 UNP Q8EGW2 INITIATING METHIONINE SEQADV 8T1S HIS B 2 UNP Q8EGW2 EXPRESSION TAG SEQADV 8T1S HIS B 3 UNP Q8EGW2 EXPRESSION TAG SEQADV 8T1S HIS B 4 UNP Q8EGW2 EXPRESSION TAG SEQADV 8T1S HIS B 5 UNP Q8EGW2 EXPRESSION TAG SEQADV 8T1S HIS B 6 UNP Q8EGW2 EXPRESSION TAG SEQADV 8T1S HIS B 7 UNP Q8EGW2 EXPRESSION TAG SEQADV 8T1S B UNP Q8EGW2 GLN 60 DELETION SEQADV 8T1S B UNP Q8EGW2 SER 61 DELETION SEQADV 8T1S B UNP Q8EGW2 TYR 62 DELETION SEQADV 8T1S MET D 1 UNP Q8EGW2 INITIATING METHIONINE SEQADV 8T1S HIS D 2 UNP Q8EGW2 EXPRESSION TAG SEQADV 8T1S HIS D 3 UNP Q8EGW2 EXPRESSION TAG SEQADV 8T1S HIS D 4 UNP Q8EGW2 EXPRESSION TAG SEQADV 8T1S HIS D 5 UNP Q8EGW2 EXPRESSION TAG SEQADV 8T1S HIS D 6 UNP Q8EGW2 EXPRESSION TAG SEQADV 8T1S HIS D 7 UNP Q8EGW2 EXPRESSION TAG SEQADV 8T1S D UNP Q8EGW2 GLN 60 DELETION SEQADV 8T1S D UNP Q8EGW2 SER 61 DELETION SEQADV 8T1S D UNP Q8EGW2 TYR 62 DELETION SEQRES 1 A 262 GLY SER LEU VAL CYS VAL GLY THR GLY LEU GLN LEU ALA SEQRES 2 A 262 GLY GLN ILE SER VAL LEU SER ARG SER TYR ILE GLU HIS SEQRES 3 A 262 ALA ASP ILE VAL PHE SER LEU LEU PRO ASP GLY PHE SER SEQRES 4 A 262 GLN ARG TRP LEU THR LYS LEU ASN PRO ASN VAL ILE ASN SEQRES 5 A 262 LEU GLN GLN PHE TYR ALA GLN ASN GLY GLU VAL LYS ASN SEQRES 6 A 262 ARG ARG ASP THR TYR GLU GLN MET VAL ASN ALA ILE LEU SEQRES 7 A 262 ASP ALA VAL ARG ALA GLY LYS LYS THR VAL CYS ALA LEU SEQRES 8 A 262 TYR GLY HIS PRO GLY VAL PHE ALA CYS VAL SER HIS MET SEQRES 9 A 262 ALA ILE THR ARG ALA LYS ALA GLU GLY PHE SER ALA LYS SEQRES 10 A 262 MET GLU PRO GLY ILE SER ALA GLU ALA CYS LEU TRP ALA SEQRES 11 A 262 ASP LEU GLY ILE ASP PRO GLY ASN SER GLY HIS GLN SER SEQRES 12 A 262 PHE GLU ALA SER GLN PHE MET PHE PHE ASN HIS VAL PRO SEQRES 13 A 262 ASP PRO THR THR HIS LEU LEU LEU TRP GLN ILE ALA ILE SEQRES 14 A 262 ALA GLY GLU HIS THR LEU THR GLN PHE HIS THR SER SER SEQRES 15 A 262 ASP ARG LEU GLN ILE LEU VAL GLU GLN LEU ASN GLN TRP SEQRES 16 A 262 TYR PRO LEU ASP HIS GLU VAL VAL ILE TYR GLU ALA ALA SEQRES 17 A 262 ASN LEU PRO ILE GLN ALA PRO ARG ILE GLU ARG LEU PRO SEQRES 18 A 262 LEU ALA ASN LEU PRO GLN ALA HIS LEU MET PRO ILE SER SEQRES 19 A 262 THR LEU LEU ILE PRO PRO ALA LYS LYS LEU GLU TYR ASN SEQRES 20 A 262 TYR ALA ILE LEU ALA LYS LEU GLY ILE GLY PRO GLU ASP SEQRES 21 A 262 LEU GLY SEQRES 1 B 75 MET HIS HIS HIS HIS HIS HIS MET SER GLY LEU SER ASP SEQRES 2 B 75 PHE PHE THR GLN LEU GLY GLN ASP ALA GLN LEU MET GLU SEQRES 3 B 75 ASP TYR LYS GLN ASN PRO GLU ALA VAL MET ARG ALA HIS SEQRES 4 B 75 GLY LEU THR ASP GLU GLN ILE ASN ALA VAL MET THR GLY SEQRES 5 B 75 ASP MET GLU LYS LEU LYS THR LEU SER GLY ASP SER SER SEQRES 6 B 75 TYR LEU VAL IML SER HIS GLY ASN GLY ASP SEQRES 1 C 262 GLY SER LEU VAL CYS VAL GLY THR GLY LEU GLN LEU ALA SEQRES 2 C 262 GLY GLN ILE SER VAL LEU SER ARG SER TYR ILE GLU HIS SEQRES 3 C 262 ALA ASP ILE VAL PHE SER LEU LEU PRO ASP GLY PHE SER SEQRES 4 C 262 GLN ARG TRP LEU THR LYS LEU ASN PRO ASN VAL ILE ASN SEQRES 5 C 262 LEU GLN GLN PHE TYR ALA GLN ASN GLY GLU VAL LYS ASN SEQRES 6 C 262 ARG ARG ASP THR TYR GLU GLN MET VAL ASN ALA ILE LEU SEQRES 7 C 262 ASP ALA VAL ARG ALA GLY LYS LYS THR VAL CYS ALA LEU SEQRES 8 C 262 TYR GLY HIS PRO GLY VAL PHE ALA CYS VAL SER HIS MET SEQRES 9 C 262 ALA ILE THR ARG ALA LYS ALA GLU GLY PHE SER ALA LYS SEQRES 10 C 262 MET GLU PRO GLY ILE SER ALA GLU ALA CYS LEU TRP ALA SEQRES 11 C 262 ASP LEU GLY ILE ASP PRO GLY ASN SER GLY HIS GLN SER SEQRES 12 C 262 PHE GLU ALA SER GLN PHE MET PHE PHE ASN HIS VAL PRO SEQRES 13 C 262 ASP PRO THR THR HIS LEU LEU LEU TRP GLN ILE ALA ILE SEQRES 14 C 262 ALA GLY GLU HIS THR LEU THR GLN PHE HIS THR SER SER SEQRES 15 C 262 ASP ARG LEU GLN ILE LEU VAL GLU GLN LEU ASN GLN TRP SEQRES 16 C 262 TYR PRO LEU ASP HIS GLU VAL VAL ILE TYR GLU ALA ALA SEQRES 17 C 262 ASN LEU PRO ILE GLN ALA PRO ARG ILE GLU ARG LEU PRO SEQRES 18 C 262 LEU ALA ASN LEU PRO GLN ALA HIS LEU MET PRO ILE SER SEQRES 19 C 262 THR LEU LEU ILE PRO PRO ALA LYS LYS LEU GLU TYR ASN SEQRES 20 C 262 TYR ALA ILE LEU ALA LYS LEU GLY ILE GLY PRO GLU ASP SEQRES 21 C 262 LEU GLY SEQRES 1 D 75 MET HIS HIS HIS HIS HIS HIS MET SER GLY LEU SER ASP SEQRES 2 D 75 PHE PHE THR GLN LEU GLY GLN ASP ALA GLN LEU MET GLU SEQRES 3 D 75 ASP TYR LYS GLN ASN PRO GLU ALA VAL MET ARG ALA HIS SEQRES 4 D 75 GLY LEU THR ASP GLU GLN ILE ASN ALA VAL MET THR GLY SEQRES 5 D 75 ASP MET GLU LYS LEU LYS THR LEU SER GLY ASP SER SER SEQRES 6 D 75 TYR LEU VAL IML SER HIS GLY ASN GLY ASP MODRES 8T1S IML B 69 ILE MODIFIED RESIDUE MODRES 8T1S IML D 69 ILE MODIFIED RESIDUE HET IML B 69 9 HET IML D 69 9 HET SAH A 301 26 HET ZN A 302 1 HET SAH C 301 26 HETNAM IML N-METHYL-ISOLEUCINE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE HETNAM ZN ZINC ION FORMUL 2 IML 2(C7 H15 N O2) FORMUL 5 SAH 2(C14 H20 N6 O5 S) FORMUL 6 ZN ZN 2+ FORMUL 8 HOH *544(H2 O) HELIX 1 AA1 SER A 18 HIS A 27 1 10 HELIX 2 AA2 ASP A 37 ASN A 48 1 12 HELIX 3 AA3 GLN A 55 TYR A 58 5 4 HELIX 4 AA4 ASN A 66 GLY A 85 1 20 HELIX 5 AA5 ALA A 100 GLU A 113 1 14 HELIX 6 AA6 SER A 124 GLY A 134 1 11 HELIX 7 AA7 ALA A 147 PHE A 153 1 7 HELIX 8 AA8 ILE A 168 ALA A 171 5 4 HELIX 9 AA9 SER A 182 ASN A 194 1 13 HELIX 10 AB1 ALA A 224 ALA A 229 5 6 HELIX 11 AB2 ASN A 248 LEU A 255 1 8 HELIX 12 AB3 GLY A 258 LEU A 262 5 5 HELIX 13 AB4 LEU B 11 ASP B 21 1 11 HELIX 14 AB5 ASP B 21 ASN B 31 1 11 HELIX 15 AB6 ASN B 31 HIS B 39 1 9 HELIX 16 AB7 THR B 42 GLY B 52 1 11 HELIX 17 AB8 ASP B 53 LYS B 58 1 6 HELIX 18 AB9 SER C 18 ALA C 28 1 11 HELIX 19 AC1 ASP C 37 ASN C 48 1 12 HELIX 20 AC2 GLN C 55 TYR C 58 5 4 HELIX 21 AC3 ASN C 66 GLY C 85 1 20 HELIX 22 AC4 ALA C 100 GLU C 113 1 14 HELIX 23 AC5 SER C 124 GLY C 134 1 11 HELIX 24 AC6 ALA C 147 PHE C 153 1 7 HELIX 25 AC7 GLN C 167 ALA C 171 5 5 HELIX 26 AC8 SER C 182 ASN C 194 1 13 HELIX 27 AC9 ALA C 224 ALA C 229 5 6 HELIX 28 AD1 ASN C 248 LEU C 255 1 8 HELIX 29 AD2 GLY C 258 LEU C 262 5 5 HELIX 30 AD3 SER D 12 ASP D 21 1 10 HELIX 31 AD4 ASP D 21 ASN D 31 1 11 HELIX 32 AD5 ASN D 31 HIS D 39 1 9 HELIX 33 AD6 THR D 42 GLY D 52 1 11 HELIX 34 AD7 ASP D 53 LYS D 58 1 6 SHEET 1 AA1 5 VAL A 51 ASN A 53 0 SHEET 2 AA1 5 ILE A 30 LEU A 34 1 N VAL A 31 O ILE A 52 SHEET 3 AA1 5 LYS A 87 LEU A 92 1 O ALA A 91 N PHE A 32 SHEET 4 AA1 5 SER A 3 GLY A 8 1 N VAL A 7 O CYS A 90 SHEET 5 AA1 5 SER A 116 MET A 119 1 O LYS A 118 N CYS A 6 SHEET 1 AA210 ARG A 217 PRO A 222 0 SHEET 2 AA210 GLU A 202 GLU A 207 -1 N VAL A 203 O LEU A 221 SHEET 3 AA210 THR A 236 ILE A 239 -1 O LEU A 238 N VAL A 204 SHEET 4 AA210 HIS A 162 TRP A 166 -1 N LEU A 163 O ILE A 239 SHEET 5 AA210 HIS A 142 GLU A 146 1 N GLN A 143 O LEU A 164 SHEET 6 AA210 HIS C 142 GLU C 146 -1 O SER C 144 N HIS A 142 SHEET 7 AA210 HIS C 162 TRP C 166 1 O LEU C 164 N GLN C 143 SHEET 8 AA210 THR C 236 ILE C 239 -1 O ILE C 239 N LEU C 163 SHEET 9 AA210 GLU C 202 GLU C 207 -1 N VAL C 204 O LEU C 238 SHEET 10 AA210 ARG C 217 PRO C 222 -1 O LEU C 221 N VAL C 203 SHEET 1 AA3 5 VAL C 51 ASN C 53 0 SHEET 2 AA3 5 ILE C 30 LEU C 34 1 N VAL C 31 O ILE C 52 SHEET 3 AA3 5 LYS C 87 LEU C 92 1 O ALA C 91 N PHE C 32 SHEET 4 AA3 5 SER C 3 GLY C 8 1 N VAL C 7 O CYS C 90 SHEET 5 AA3 5 SER C 116 MET C 119 1 O SER C 116 N LEU C 4 LINK C VAL B 68 N IML B 69 1555 1555 1.36 LINK C IML B 69 N SER B 70 1555 1555 1.34 LINK C VAL D 68 N IML D 69 1555 1555 1.35 LINK C IML D 69 N SER D 70 1555 1555 1.34 LINK OE2 GLU A 126 ZN ZN A 302 1555 1555 2.28 LINK NE2BHIS A 142 ZN ZN A 302 1555 1555 2.18 LINK ZN ZN A 302 O HOH A 422 1555 1555 2.70 LINK ZN ZN A 302 OE2 GLU C 126 1555 1555 2.16 LINK ZN ZN A 302 NE2 HIS C 142 1555 1555 2.68 CRYST1 52.390 108.730 59.140 90.00 93.66 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019088 0.000000 0.001220 0.00000 SCALE2 0.000000 0.009197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016944 0.00000