HEADER TRANSFERASE/DNA 03-JUN-23 8T1U TITLE CRYSTAL STRUCTURE OF THE DRM2-CTA DNA COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (CYTOSINE-5)-METHYLTRANSFERASE DRM2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PROTEIN DOMAINS REARRANGED METHYLASE 2; COMPND 5 EC: 2.1.1.37; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'- COMPND 9 D(P*TP*AP*AP*AP*TP*TP*TP*AP*GP*AP*TP*TP*AP*AP*TP*AP*AP*T)-3'); COMPND 10 CHAIN: E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(P*AP*TP*TP*AP*TP*TP*AP*AP*TP*(C49) COMPND 14 P*TP*AP*AP*AP*TP*TP*TP*A)-3'); COMPND 15 CHAIN: G; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: DRM2, AT5G14620/AT5G14630, T15N1.110/T15N1.120; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 11 ORGANISM_COMMON: THALE CRESS; SOURCE 12 ORGANISM_TAXID: 3702; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 16 ORGANISM_COMMON: THALE CRESS; SOURCE 17 ORGANISM_TAXID: 3702 KEYWDS PLANT DNA METHYLTRANSFERASE, TRANSFERASE, TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.CHEN,J.LU,J.SONG REVDAT 2 13-DEC-23 8T1U 1 JRNL REVDAT 1 22-NOV-23 8T1U 0 JRNL AUTH J.CHEN,J.LU,J.LIU,J.FANG,X.ZHONG,J.SONG JRNL TITL DNA CONFORMATIONAL DYNAMICS IN THE CONTEXT-DEPENDENT NON-CG JRNL TITL 2 CHH METHYLATION BY PLANT METHYLTRANSFERASE DRM2. JRNL REF J.BIOL.CHEM. V. 299 05433 2023 JRNL REFN ESSN 1083-351X JRNL PMID 37926286 JRNL DOI 10.1016/J.JBC.2023.105433 REMARK 2 REMARK 2 RESOLUTION. 2.91 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.20.1_4487: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.91 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.41 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 16153 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1616 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4100 - 6.6600 0.92 1265 141 0.1652 0.1906 REMARK 3 2 6.6600 - 5.2900 0.95 1238 137 0.1858 0.2210 REMARK 3 3 5.2900 - 4.6200 0.96 1229 137 0.1664 0.2023 REMARK 3 4 4.6200 - 4.2000 0.95 1206 133 0.1660 0.2336 REMARK 3 5 4.2000 - 3.9000 0.96 1222 137 0.1773 0.2400 REMARK 3 6 3.9000 - 3.6700 0.98 1241 137 0.2100 0.2689 REMARK 3 7 3.6700 - 3.4900 0.98 1240 138 0.2045 0.2520 REMARK 3 8 3.4900 - 3.3300 0.98 1228 137 0.2237 0.2522 REMARK 3 9 3.3300 - 3.2100 0.99 1218 136 0.2263 0.2825 REMARK 3 10 3.2100 - 3.1000 0.96 1213 135 0.2858 0.3030 REMARK 3 11 3.1000 - 3.0000 0.91 1143 127 0.2874 0.3661 REMARK 3 12 3.0000 - 2.9100 0.88 1094 121 0.3222 0.3866 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3830 REMARK 3 ANGLE : 0.737 5380 REMARK 3 CHIRALITY : 0.045 586 REMARK 3 PLANARITY : 0.005 552 REMARK 3 DIHEDRAL : 28.096 792 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2787 21.1414 16.4262 REMARK 3 T TENSOR REMARK 3 T11: 0.1985 T22: 0.1406 REMARK 3 T33: 0.2871 T12: -0.0032 REMARK 3 T13: -0.0723 T23: -0.0427 REMARK 3 L TENSOR REMARK 3 L11: 1.7105 L22: 2.8860 REMARK 3 L33: 2.5939 L12: -1.4255 REMARK 3 L13: -0.1622 L23: 1.0223 REMARK 3 S TENSOR REMARK 3 S11: -0.1984 S12: -0.3261 S13: 0.1886 REMARK 3 S21: 0.2569 S22: 0.4695 S23: -0.7940 REMARK 3 S31: 0.5087 S32: 0.0998 S33: 0.0422 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 375 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5390 30.3865 15.6465 REMARK 3 T TENSOR REMARK 3 T11: 0.1503 T22: 0.0973 REMARK 3 T33: 0.2691 T12: 0.0856 REMARK 3 T13: 0.0665 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.9375 L22: 0.7608 REMARK 3 L33: 1.5364 L12: -0.1171 REMARK 3 L13: 0.2103 L23: 0.0645 REMARK 3 S TENSOR REMARK 3 S11: 0.2094 S12: -0.1773 S13: -0.4685 REMARK 3 S21: 0.0530 S22: -0.0416 S23: -0.1214 REMARK 3 S31: 0.0075 S32: 0.0719 S33: -0.0428 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 376 THROUGH 400 ) REMARK 3 ORIGIN FOR THE GROUP (A): -11.0746 30.9642 2.1062 REMARK 3 T TENSOR REMARK 3 T11: 0.1462 T22: 0.1965 REMARK 3 T33: 0.2199 T12: 0.0197 REMARK 3 T13: -0.0482 T23: -0.0197 REMARK 3 L TENSOR REMARK 3 L11: 3.6151 L22: 1.7890 REMARK 3 L33: 2.1868 L12: -1.1281 REMARK 3 L13: 1.0618 L23: 0.6126 REMARK 3 S TENSOR REMARK 3 S11: -0.3009 S12: 0.1928 S13: 0.1387 REMARK 3 S21: 0.3530 S22: 0.1135 S23: 0.3866 REMARK 3 S31: -0.0088 S32: -0.1368 S33: 0.1532 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 401 THROUGH 435 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6531 27.6859 -9.8084 REMARK 3 T TENSOR REMARK 3 T11: 0.5365 T22: 0.7880 REMARK 3 T33: 0.2406 T12: 0.1464 REMARK 3 T13: -0.1322 T23: -0.1613 REMARK 3 L TENSOR REMARK 3 L11: 5.2623 L22: 1.5113 REMARK 3 L33: 2.2609 L12: -0.7725 REMARK 3 L13: -0.3979 L23: -1.7100 REMARK 3 S TENSOR REMARK 3 S11: 0.0990 S12: 0.8908 S13: -0.8922 REMARK 3 S21: -0.9446 S22: -0.4353 S23: 0.3102 REMARK 3 S31: 0.7015 S32: 0.0336 S33: -0.0208 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 436 THROUGH 470 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.6973 41.9302 4.3156 REMARK 3 T TENSOR REMARK 3 T11: 0.1871 T22: 0.3001 REMARK 3 T33: 0.2785 T12: -0.0170 REMARK 3 T13: 0.0715 T23: -0.0202 REMARK 3 L TENSOR REMARK 3 L11: 1.7885 L22: 2.3504 REMARK 3 L33: 2.8174 L12: 0.7509 REMARK 3 L13: 0.6719 L23: 1.1901 REMARK 3 S TENSOR REMARK 3 S11: -0.0613 S12: 0.0597 S13: 0.4639 REMARK 3 S21: -0.1399 S22: -0.0615 S23: 0.2718 REMARK 3 S31: -0.2164 S32: -0.4571 S33: 0.1411 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 471 THROUGH 547 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6801 45.9297 16.5657 REMARK 3 T TENSOR REMARK 3 T11: 0.1569 T22: 0.1374 REMARK 3 T33: 0.1387 T12: 0.0355 REMARK 3 T13: -0.0081 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.3197 L22: 1.6169 REMARK 3 L33: 2.4154 L12: 0.2845 REMARK 3 L13: 0.4932 L23: -0.5490 REMARK 3 S TENSOR REMARK 3 S11: -0.0433 S12: -0.0371 S13: 0.2250 REMARK 3 S21: 0.1291 S22: 0.0274 S23: 0.2618 REMARK 3 S31: -0.3821 S32: -0.2968 S33: 0.0385 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 548 THROUGH 626 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6624 44.5002 11.6299 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.2106 REMARK 3 T33: 0.1720 T12: -0.0052 REMARK 3 T13: 0.0443 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.9618 L22: 2.2755 REMARK 3 L33: 2.3154 L12: -0.0010 REMARK 3 L13: 0.5711 L23: 0.8291 REMARK 3 S TENSOR REMARK 3 S11: 0.0241 S12: 0.0318 S13: -0.0049 REMARK 3 S21: 0.0086 S22: 0.0956 S23: -0.2213 REMARK 3 S31: -0.0352 S32: 0.5421 S33: -0.0637 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.2299 53.6028 -9.5381 REMARK 3 T TENSOR REMARK 3 T11: 0.5010 T22: 0.2409 REMARK 3 T33: 0.6518 T12: 0.0122 REMARK 3 T13: -0.1869 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 4.0521 L22: 3.6618 REMARK 3 L33: 8.7637 L12: -1.7907 REMARK 3 L13: -0.3180 L23: 0.9480 REMARK 3 S TENSOR REMARK 3 S11: 0.0270 S12: 0.1212 S13: 1.0162 REMARK 3 S21: 0.0376 S22: -0.2955 S23: -0.3674 REMARK 3 S31: -0.6071 S32: 0.4855 S33: 0.1467 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 6 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9627 35.7884 -13.8905 REMARK 3 T TENSOR REMARK 3 T11: 0.5995 T22: 0.3908 REMARK 3 T33: 0.3934 T12: 0.1013 REMARK 3 T13: -0.1815 T23: -0.1815 REMARK 3 L TENSOR REMARK 3 L11: 1.7618 L22: 2.2891 REMARK 3 L33: 2.4811 L12: 1.4611 REMARK 3 L13: 0.6426 L23: 1.0764 REMARK 3 S TENSOR REMARK 3 S11: -0.1840 S12: 0.1103 S13: 0.4151 REMARK 3 S21: -0.3809 S22: -0.4519 S23: 0.7706 REMARK 3 S31: 0.0016 S32: -0.3123 S33: 0.1002 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'E' AND (RESID 11 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.5633 13.8808 -1.5747 REMARK 3 T TENSOR REMARK 3 T11: 0.5720 T22: 0.2598 REMARK 3 T33: 0.5886 T12: -0.0030 REMARK 3 T13: -0.1978 T23: -0.0319 REMARK 3 L TENSOR REMARK 3 L11: 2.5625 L22: 0.0312 REMARK 3 L33: 2.7871 L12: -0.0349 REMARK 3 L13: -1.6485 L23: 0.2841 REMARK 3 S TENSOR REMARK 3 S11: 0.3960 S12: -0.1880 S13: -1.3410 REMARK 3 S21: -0.4532 S22: -0.1719 S23: 0.4049 REMARK 3 S31: 1.0327 S32: -0.0980 S33: -0.0247 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7345 6.6247 -3.7594 REMARK 3 T TENSOR REMARK 3 T11: 1.4107 T22: 0.2347 REMARK 3 T33: 1.4195 T12: -0.1085 REMARK 3 T13: -0.1086 T23: -0.3356 REMARK 3 L TENSOR REMARK 3 L11: 3.1524 L22: 8.6663 REMARK 3 L33: 1.5039 L12: 0.6902 REMARK 3 L13: -0.6284 L23: -2.7853 REMARK 3 S TENSOR REMARK 3 S11: 0.0545 S12: 0.1060 S13: -1.3686 REMARK 3 S21: 0.1087 S22: -0.0427 S23: -1.0134 REMARK 3 S31: 1.3273 S32: 0.2961 S33: 0.0579 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'G' AND (RESID 6 THROUGH 18 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2048 38.2507 -8.9126 REMARK 3 T TENSOR REMARK 3 T11: 0.3424 T22: 0.2675 REMARK 3 T33: 0.2831 T12: 0.0789 REMARK 3 T13: -0.0442 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.0667 L22: 3.6491 REMARK 3 L33: 2.4830 L12: -1.1538 REMARK 3 L13: -0.0733 L23: -1.5870 REMARK 3 S TENSOR REMARK 3 S11: 0.2911 S12: 0.2262 S13: -0.0777 REMARK 3 S21: -0.7352 S22: -0.2605 S23: 0.0450 REMARK 3 S31: 0.2216 S32: 0.2143 S33: 0.0636 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275050. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97741 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16195 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.3 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.26000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 2.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.3 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.80400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM CITRATE TRIBASIC AND REMARK 280 20% W/V POLYETHYLENE GLYCOL 3350 (PH 7.0), VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.24850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.24850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 27.23450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 116.42650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 27.23450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 116.42650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.24850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 27.23450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 116.42650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 59.24850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 27.23450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 116.42650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5140 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 841 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 304 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 416 CG CD OE1 OE2 REMARK 470 GLU A 417 CG CD OE1 OE2 REMARK 470 GLU A 419 CG CD OE1 OE2 REMARK 470 LYS A 422 CE NZ REMARK 470 LYS A 461 CG CD CE NZ REMARK 470 ARG A 465 NE CZ NH1 NH2 REMARK 470 GLN A 522 OE1 NE2 REMARK 470 LYS A 535 CG CD CE NZ REMARK 470 LYS A 542 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA G 13 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 329 54.57 -110.02 REMARK 500 CYS A 343 -171.17 -170.30 REMARK 500 ARG A 347 86.19 -165.34 REMARK 500 SER A 558 -86.27 -92.64 REMARK 500 REMARK 500 REMARK: NULL DBREF 8T1U A 274 626 UNP Q9M548 DRM2_ARATH 274 626 DBREF 8T1U E 1 18 PDB 8T1U 8T1U 1 18 DBREF 8T1U G 1 18 PDB 8T1U 8T1U 1 18 SEQRES 1 A 353 GLU PRO ILE ARG LEU PRO ASN PRO MET ILE GLY PHE GLY SEQRES 2 A 353 VAL PRO ASN GLU PRO GLY LEU ILE THR HIS ARG SER LEU SEQRES 3 A 353 PRO GLU LEU ALA ARG GLY PRO PRO PHE PHE TYR TYR GLU SEQRES 4 A 353 ASN VAL ALA LEU THR PRO LYS GLY VAL TRP GLU THR ILE SEQRES 5 A 353 SER ARG HIS LEU PHE GLU ILE PRO PRO GLU PHE VAL ASP SEQRES 6 A 353 SER LYS TYR PHE CYS VAL ALA ALA ARG LYS ARG GLY TYR SEQRES 7 A 353 ILE HIS ASN LEU PRO ILE ASN ASN ARG PHE GLN ILE GLN SEQRES 8 A 353 PRO PRO PRO LYS TYR THR ILE HIS ASP ALA PHE PRO LEU SEQRES 9 A 353 SER LYS ARG TRP TRP PRO GLU TRP ASP LYS ARG THR LYS SEQRES 10 A 353 LEU ASN CYS ILE LEU THR CYS THR GLY SER ALA GLN LEU SEQRES 11 A 353 THR ASN ARG ILE ARG VAL ALA LEU GLU PRO TYR ASN GLU SEQRES 12 A 353 GLU PRO GLU PRO PRO LYS HIS VAL GLN ARG TYR VAL ILE SEQRES 13 A 353 ASP GLN CYS LYS LYS TRP ASN LEU VAL TRP VAL GLY LYS SEQRES 14 A 353 ASN LYS ALA ALA PRO LEU GLU PRO ASP GLU MET GLU SER SEQRES 15 A 353 ILE LEU GLY PHE PRO LYS ASN HIS THR ARG GLY GLY GLY SEQRES 16 A 353 MET SER ARG THR GLU ARG PHE LYS SER LEU GLY ASN SER SEQRES 17 A 353 PHE GLN VAL ASP THR VAL ALA TYR HIS LEU SER VAL LEU SEQRES 18 A 353 LYS PRO ILE PHE PRO HIS GLY ILE ASN VAL LEU SER LEU SEQRES 19 A 353 PHE THR GLY ILE GLY GLY GLY GLU VAL ALA LEU HIS ARG SEQRES 20 A 353 LEU GLN ILE LYS MET LYS LEU VAL VAL SER VAL GLU ILE SEQRES 21 A 353 SER LYS VAL ASN ARG ASN ILE LEU LYS ASP PHE TRP GLU SEQRES 22 A 353 GLN THR ASN GLN THR GLY GLU LEU ILE GLU PHE SER ASP SEQRES 23 A 353 ILE GLN HIS LEU THR ASN ASP THR ILE GLU GLY LEU MET SEQRES 24 A 353 GLU LYS TYR GLY GLY PHE ASP LEU VAL ILE GLY GLY SER SEQRES 25 A 353 PRO CYS ASN ASN LEU ALA GLY GLY ASN ARG VAL SER ARG SEQRES 26 A 353 VAL GLY LEU GLU GLY ASP GLN SER SER LEU PHE PHE GLU SEQRES 27 A 353 TYR CYS ARG ILE LEU GLU VAL VAL ARG ALA ARG MET ARG SEQRES 28 A 353 GLY SER SEQRES 1 E 18 DT DA DA DA DT DT DT DA DG DA DT DT DA SEQRES 2 E 18 DA DT DA DA DT SEQRES 1 G 18 DA DT DT DA DT DT DA DA DT C49 DT DA DA SEQRES 2 G 18 DA DT DT DT DA HET C49 G 10 21 HET SAH A 701 26 HETNAM C49 4-THIO,5-FLUORO,5-METHYL-2'-DEOXY-CYTIDINE-5'- HETNAM 2 C49 MONOPHOSPHATE HETNAM SAH S-ADENOSYL-L-HOMOCYSTEINE FORMUL 3 C49 C10 H15 F N3 O7 P S FORMUL 4 SAH C14 H20 N6 O5 S FORMUL 5 HOH *88(H2 O) HELIX 1 AA1 PRO A 300 ARG A 304 5 5 HELIX 2 AA2 GLY A 320 LEU A 329 1 10 HELIX 3 AA3 LYS A 340 PHE A 342 5 3 HELIX 4 AA4 THR A 370 PHE A 375 1 6 HELIX 5 AA5 LEU A 377 TRP A 381 5 5 HELIX 6 AA6 SER A 400 GLU A 412 1 13 HELIX 7 AA7 PRO A 413 ASN A 415 5 3 HELIX 8 AA8 PRO A 421 ASN A 436 1 16 HELIX 9 AA9 GLU A 449 LEU A 457 1 9 HELIX 10 AB1 SER A 470 ASN A 480 1 11 HELIX 11 AB2 GLN A 483 SER A 492 1 10 HELIX 12 AB3 VAL A 493 LYS A 495 5 3 HELIX 13 AB4 GLY A 512 LEU A 521 1 10 HELIX 14 AB5 SER A 534 THR A 548 1 15 HELIX 15 AB6 THR A 564 GLY A 576 1 13 HELIX 16 AB7 SER A 607 ARG A 624 1 18 SHEET 1 AA1 7 GLU A 335 ASP A 338 0 SHEET 2 AA1 7 LYS A 348 HIS A 353 -1 O TYR A 351 N GLU A 335 SHEET 3 AA1 7 PHE A 308 VAL A 314 -1 N ASN A 313 O GLY A 350 SHEET 4 AA1 7 LEU A 580 GLY A 583 1 O VAL A 581 N TYR A 310 SHEET 5 AA1 7 ILE A 502 LEU A 507 1 N LEU A 505 O LEU A 580 SHEET 6 AA1 7 MET A 525 VAL A 531 1 O VAL A 529 N SER A 506 SHEET 7 AA1 7 GLU A 553 PHE A 557 1 O ILE A 555 N SER A 530 SHEET 1 AA2 2 VAL A 438 TRP A 439 0 SHEET 2 AA2 2 ALA A 445 ALA A 446 -1 O ALA A 446 N VAL A 438 LINK SG CYS A 587 C6 C49 G 10 1555 1555 1.84 LINK O3' DT G 9 P C49 G 10 1555 1555 1.60 LINK O3' C49 G 10 P DT G 11 1555 1555 1.60 CISPEP 1 ASN A 280 PRO A 281 0 6.12 CISPEP 2 GLY A 305 PRO A 306 0 3.30 CISPEP 3 PRO A 306 PRO A 307 0 -2.18 CISPEP 4 GLN A 364 PRO A 365 0 -3.89 CRYST1 54.469 232.853 118.497 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018359 0.000000 0.000000 0.00000 SCALE2 0.000000 0.004295 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008439 0.00000