HEADER PROTEIN BINDING 05-JUN-23 8T2D TITLE UBIQUITIN VARIANT I53:MUTANT T12Y.T14E.L67R WITH 53BP1 TUDOR DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UBIQUITIN VARIANT I53; COMPND 3 CHAIN: B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: TUMOR PROTEIN P53 BINDING PROTEIN 1; COMPND 8 CHAIN: A; COMPND 9 FRAGMENT: TUDOR DOMAIN; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: UBB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TP53BP1; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.R.PARTRIDGE,J.K.HOLDEN,A.S.WIBOWO,A.MULICHAK REVDAT 2 03-APR-24 8T2D 1 JRNL REVDAT 1 27-MAR-24 8T2D 0 JRNL AUTH J.A.PEREZ-BERMEJO,O.EFAGENE,W.M.MATERN,J.K.HOLDEN,S.KABIR, JRNL AUTH 2 G.M.CHEW,G.ANDREOLETTI,E.CATTON,C.L.ENNIS,A.GARCIA, JRNL AUTH 3 T.L.GERSTENBERG,K.A.HILL,A.JAIN,K.KRASSOVSKY,C.D.LALISAN, JRNL AUTH 4 D.LORD,B.J.QUEJARRO,J.SALES-LEE,M.SHAH,B.J.SILVA, JRNL AUTH 5 J.SKOWRONSKI,Y.G.STRUKOV,J.THOMAS,M.VERAZ,T.VIJAY, JRNL AUTH 6 K.A.WALLACE,Y.YUAN,J.L.GROGAN,B.WIENERT,P.LAHIRI,S.TREUSCH, JRNL AUTH 7 D.P.DEVER,V.B.SOROS,J.R.PARTRIDGE,K.L.SEIM JRNL TITL FUNCTIONAL SCREENING IN HUMAN HSPCS IDENTIFIES OPTIMIZED JRNL TITL 2 PROTEIN-BASED ENHANCERS OF HOMOLOGY DIRECTED REPAIR. JRNL REF NAT COMMUN V. 15 2625 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38521763 JRNL DOI 10.1038/S41467-024-46816-5 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 17497 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.818 REMARK 3 FREE R VALUE TEST SET COUNT : 843 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1169 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.3650 REMARK 3 BIN FREE R VALUE SET COUNT : 55 REMARK 3 BIN FREE R VALUE : 0.4070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1535 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.23200 REMARK 3 B22 (A**2) : -0.48800 REMARK 3 B33 (A**2) : 0.25500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.155 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.150 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.124 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1561 ; 0.007 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 1521 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2096 ; 1.348 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3513 ; 0.452 ; 1.578 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 187 ; 7.225 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 12 ; 5.676 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 299 ;16.266 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 227 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1793 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 351 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 251 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 39 ; 0.230 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 729 ; 0.183 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 76 ; 0.139 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 757 ; 2.930 ; 3.066 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 756 ; 2.929 ; 3.060 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 941 ; 4.250 ; 5.476 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 942 ; 4.256 ; 5.480 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 804 ; 3.836 ; 3.585 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 804 ; 3.837 ; 3.584 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1155 ; 6.024 ; 6.368 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1156 ; 6.021 ; 6.371 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 74 REMARK 3 ORIGIN FOR THE GROUP (A): -10.3117 -3.7673 -5.4841 REMARK 3 T TENSOR REMARK 3 T11: 0.2680 T22: 0.0290 REMARK 3 T33: 0.0201 T12: -0.0596 REMARK 3 T13: -0.0314 T23: -0.0078 REMARK 3 L TENSOR REMARK 3 L11: 0.1898 L22: 4.5365 REMARK 3 L33: 2.3078 L12: 0.0563 REMARK 3 L13: -0.6329 L23: -1.0276 REMARK 3 S TENSOR REMARK 3 S11: -0.0322 S12: -0.0434 S13: 0.0479 REMARK 3 S21: -0.6390 S22: 0.1954 S23: 0.0193 REMARK 3 S31: 0.3245 S32: 0.0868 S33: -0.1631 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 0 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 ORIGIN FOR THE GROUP (A): -11.5270 16.0583 -15.4487 REMARK 3 T TENSOR REMARK 3 T11: 0.1762 T22: 0.0271 REMARK 3 T33: 0.0592 T12: 0.0112 REMARK 3 T13: 0.0359 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 0.5494 L22: 1.4887 REMARK 3 L33: 0.7662 L12: 0.0417 REMARK 3 L13: 0.3930 L23: -0.2472 REMARK 3 S TENSOR REMARK 3 S11: -0.0258 S12: 0.0581 S13: 0.1090 REMARK 3 S21: -0.1971 S22: -0.0655 S23: -0.1567 REMARK 3 S31: 0.0432 S32: -0.0138 S33: 0.0913 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8T2D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275095. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17557 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.751 REMARK 200 RESOLUTION RANGE LOW (A) : 29.850 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.06022 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.0, 0.2 M TRIMETHYLAMINE REMARK 280 N-OXIDE DEHYDRATE, 13% W/V PEG MME 2000, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.75550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.56100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.42750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.56100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.75550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.42750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 GLY A 1480 REMARK 465 PRO A 1481 REMARK 465 GLY A 1482 REMARK 465 SER A 1483 REMARK 465 ASN A 1484 REMARK 465 SER A 1485 REMARK 465 GLY A 1511 REMARK 465 ALA A 1512 REMARK 465 GLY A 1513 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 63 -117.97 -104.84 REMARK 500 CYS A1525 139.68 -170.41 REMARK 500 ASP A1536 114.01 -164.22 REMARK 500 GLU A1575 56.97 36.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 67 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8SVG RELATED DB: PDB REMARK 900 DIFFERENT I53 MUTANT REMARK 900 RELATED ID: 8SVH RELATED DB: PDB REMARK 900 DIFFERENT I53 MUTANT REMARK 900 RELATED ID: 8SVI RELATED DB: PDB REMARK 900 DIFFERENT I53 MUTANT REMARK 900 RELATED ID: 8SVJ RELATED DB: PDB REMARK 900 DIFFERENT I53 MUTANT DBREF 8T2D B 1 74 UNP J3QS39 J3QS39_HUMAN 1 74 DBREF 8T2D A 1484 1603 UNP A6NNK5 A6NNK5_HUMAN 1439 1558 SEQADV 8T2D GLY B -3 UNP J3QS39 EXPRESSION TAG SEQADV 8T2D PRO B -2 UNP J3QS39 EXPRESSION TAG SEQADV 8T2D GLY B -1 UNP J3QS39 EXPRESSION TAG SEQADV 8T2D SER B 0 UNP J3QS39 EXPRESSION TAG SEQADV 8T2D LEU B 2 UNP J3QS39 GLN 2 CONFLICT SEQADV 8T2D TYR B 12 UNP J3QS39 THR 12 ENGINEERED MUTATION SEQADV 8T2D GLU B 14 UNP J3QS39 THR 14 ENGINEERED MUTATION SEQADV 8T2D ALA B 44 UNP J3QS39 ILE 44 CONFLICT SEQADV 8T2D SER B 49 UNP J3QS39 GLN 49 CONFLICT SEQADV 8T2D LEU B 62 UNP J3QS39 GLN 62 CONFLICT SEQADV 8T2D ASP B 64 UNP J3QS39 GLU 64 CONFLICT SEQADV 8T2D LYS B 66 UNP J3QS39 THR 66 CONFLICT SEQADV 8T2D ARG B 67 UNP J3QS39 LEU 67 ENGINEERED MUTATION SEQADV 8T2D PRO B 69 UNP J3QS39 LEU 69 CONFLICT SEQADV 8T2D LEU B 70 UNP J3QS39 VAL 70 CONFLICT SEQADV 8T2D GLY A 1480 UNP A6NNK5 EXPRESSION TAG SEQADV 8T2D PRO A 1481 UNP A6NNK5 EXPRESSION TAG SEQADV 8T2D GLY A 1482 UNP A6NNK5 EXPRESSION TAG SEQADV 8T2D SER A 1483 UNP A6NNK5 EXPRESSION TAG SEQRES 1 B 78 GLY PRO GLY SER MET LEU ILE PHE VAL LYS THR LEU THR SEQRES 2 B 78 GLY LYS TYR ILE GLU LEU GLU VAL GLU PRO SER ASP THR SEQRES 3 B 78 ILE GLU ASN VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY SEQRES 4 B 78 ILE PRO PRO ASP GLN GLN ARG LEU ALA PHE ALA GLY LYS SEQRES 5 B 78 SER LEU GLU ASP GLY ARG THR LEU SER ASP TYR ASN ILE SEQRES 6 B 78 LEU LYS ASP SER LYS ARG HIS PRO LEU LEU ARG LEU ARG SEQRES 1 A 124 GLY PRO GLY SER ASN SER PHE VAL GLY LEU ARG VAL VAL SEQRES 2 A 124 ALA LYS TRP SER SER ASN GLY TYR PHE TYR SER GLY LYS SEQRES 3 A 124 ILE THR ARG ASP VAL GLY ALA GLY LYS TYR LYS LEU LEU SEQRES 4 A 124 PHE ASP ASP GLY TYR GLU CYS ASP VAL LEU GLY LYS ASP SEQRES 5 A 124 ILE LEU LEU CYS ASP PRO ILE PRO LEU ASP THR GLU VAL SEQRES 6 A 124 THR ALA LEU SER GLU ASP GLU TYR PHE SER ALA GLY VAL SEQRES 7 A 124 VAL LYS GLY HIS ARG LYS GLU SER GLY GLU LEU TYR TYR SEQRES 8 A 124 SER ILE GLU LYS GLU GLY GLN ARG LYS TRP TYR LYS ARG SEQRES 9 A 124 MET ALA VAL ILE LEU SER LEU GLU GLN GLY ASN ARG LEU SEQRES 10 A 124 ARG GLU GLN TYR GLY LEU GLY FORMUL 3 HOH *38(H2 O) HELIX 1 AA1 THR B 22 GLY B 35 1 14 HELIX 2 AA2 PRO B 37 GLN B 41 5 5 HELIX 3 AA3 LEU B 56 ASN B 60 5 5 HELIX 4 AA4 LEU A 1528 LYS A 1530 5 3 HELIX 5 AA5 SER A 1589 ARG A 1595 1 7 HELIX 6 AA6 LEU A 1596 GLY A 1601 1 6 SHEET 1 AA1 6 TYR B 12 VAL B 17 0 SHEET 2 AA1 6 MET B 1 LYS B 6 -1 N ILE B 3 O LEU B 15 SHEET 3 AA1 6 HIS B 68 LEU B 73 1 O LEU B 71 N PHE B 4 SHEET 4 AA1 6 TYR A1552 GLU A1564 -1 O PHE A1553 N HIS B 68 SHEET 5 AA1 6 GLU A1567 LYS A1574 -1 O TYR A1569 N ARG A1562 SHEET 6 AA1 6 GLN A1577 LYS A1582 -1 O LYS A1579 N ILE A1572 SHEET 1 AA2 6 LYS B 48 SER B 49 0 SHEET 2 AA2 6 LEU B 43 PHE B 45 -1 N PHE B 45 O LYS B 48 SHEET 3 AA2 6 HIS B 68 LEU B 73 -1 O ARG B 72 N ALA B 44 SHEET 4 AA2 6 TYR A1552 GLU A1564 -1 O PHE A1553 N HIS B 68 SHEET 5 AA2 6 GLU A1543 LEU A1547 -1 N VAL A1544 O GLY A1556 SHEET 6 AA2 6 VAL A1586 ILE A1587 -1 O ILE A1587 N THR A1545 SHEET 1 AA3 5 GLU A1524 VAL A1527 0 SHEET 2 AA3 5 TYR A1515 PHE A1519 -1 N LEU A1517 O CYS A1525 SHEET 3 AA3 5 TYR A1502 ARG A1508 -1 N ARG A1508 O LYS A1516 SHEET 4 AA3 5 ARG A1490 ALA A1493 -1 N ALA A1493 O TYR A1502 SHEET 5 AA3 5 ILE A1532 LEU A1533 -1 O LEU A1533 N VAL A1492 CISPEP 1 ASP A 1536 PRO A 1537 0 -3.50 CRYST1 39.511 46.855 91.122 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025309 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021342 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010974 0.00000