HEADER LIGASE/LIGASE INHIBITOR 06-JUN-23 8T2H TITLE DYRK1A COMPLEX WITH DYR530 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL SPECIFICITY TYROSINE-PHOSPHORYLATION-REGULATED KINASE COMPND 3 1A; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: DUAL SPECIFICITY YAK1-RELATED KINASE,HP86,PROTEIN KINASE COMPND 6 MINIBRAIN HOMOLOG,MNBH,HMNB; COMPND 7 EC: 2.7.11.23,2.7.12.1; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DYRK1A, DYRK, MNB, MNBH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS KINASE, INHIBITOR, ALZHEIMER'S DISEASE, LIGASE, LIGASE-LIGASE KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.R.MONTFORT,L.E.BASANTES REVDAT 1 15-MAY-24 8T2H 0 JRNL AUTH W.R.MONTFORT,L.E.BASANTES JRNL TITL DISCOVERY OF DYR684, A POTENT, SELECTIVE, METABOLICALLY JRNL TITL 2 STABLE, DYRK1A/B PROTAC UTILIZING A NOVEL CEREBLON MOLECULAR JRNL TITL 3 GLUE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0411 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 63675 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3381 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4678 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 219 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5581 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 93 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.45 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.28000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : 0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.249 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.706 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5838 ; 0.009 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5593 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7879 ; 1.498 ; 1.653 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12874 ; 0.499 ; 1.579 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 683 ; 6.871 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 40 ;17.020 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1048 ;15.441 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 829 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6716 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1382 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2735 ; 1.439 ; 2.084 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2735 ; 1.439 ; 2.084 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3417 ; 2.217 ; 3.724 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3418 ; 2.217 ; 3.725 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3103 ; 1.548 ; 2.379 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3104 ; 1.548 ; 2.379 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4463 ; 2.286 ; 4.221 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7256 ; 3.853 ;23.400 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7183 ; 3.750 ;22.840 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11431 ; 3.099 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8T2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000274948. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : LIQUID ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : BRUKER METALJET REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.34 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON III REMARK 200 INTENSITY-INTEGRATION SOFTWARE : PROTEUM2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 67138 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 24.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.11900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.76000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: ROD REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M SODIUM MALONATE, 1.3% PEG 400, REMARK 280 PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.73600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.33750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.60650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.33750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.73600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.60650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 126 REMARK 465 SER A 127 REMARK 465 SER A 128 REMARK 465 HIS A 129 REMARK 465 LYS A 130 REMARK 465 LYS A 131 REMARK 465 GLU A 132 REMARK 465 ARG A 133 REMARK 465 LYS A 134 REMARK 465 VAL A 135 REMARK 465 THR A 408 REMARK 465 LYS A 409 REMARK 465 ASP A 410 REMARK 465 GLY A 411 REMARK 465 LYS A 412 REMARK 465 ARG A 413 REMARK 465 LYS A 481 REMARK 465 THR A 482 REMARK 465 ALA A 483 REMARK 465 ASP A 484 REMARK 465 GLU A 485 REMARK 465 GLY A 486 REMARK 465 THR A 487 REMARK 465 ASN A 488 REMARK 465 THR A 489 REMARK 465 SER A 490 REMARK 465 ASP B 126 REMARK 465 SER B 127 REMARK 465 SER B 128 REMARK 465 HIS B 129 REMARK 465 LYS B 130 REMARK 465 LYS B 131 REMARK 465 GLU B 132 REMARK 465 ARG B 133 REMARK 465 LYS B 134 REMARK 465 LYS B 409 REMARK 465 ASP B 410 REMARK 465 GLY B 411 REMARK 465 LYS B 412 REMARK 465 ARG B 413 REMARK 465 THR B 482 REMARK 465 ALA B 483 REMARK 465 ASP B 484 REMARK 465 GLU B 485 REMARK 465 GLY B 486 REMARK 465 THR B 487 REMARK 465 ASN B 488 REMARK 465 THR B 489 REMARK 465 SER B 490 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 211 O HOH A 601 2.06 REMARK 500 O HOH B 773 O HOH B 776 2.15 REMARK 500 OE1 GLU A 160 NH2 ARG A 179 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 280 CD GLU A 280 OE1 0.073 REMARK 500 GLU A 291 CD GLU A 291 OE1 0.073 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 158 -52.81 -150.10 REMARK 500 HIS A 213 -61.96 -98.61 REMARK 500 LEU A 241 -146.38 -113.23 REMARK 500 SER A 242 -150.32 -142.30 REMARK 500 LEU A 281 -62.42 -100.76 REMARK 500 ASP A 287 43.28 -150.66 REMARK 500 ASP A 307 89.05 75.03 REMARK 500 GLN A 323 155.11 78.77 REMARK 500 SER A 362 69.60 -100.09 REMARK 500 TYR B 136 -69.83 -133.39 REMARK 500 ARG B 158 -50.30 -145.61 REMARK 500 ASP B 214 54.99 -145.53 REMARK 500 LEU B 241 -149.62 -114.16 REMARK 500 SER B 242 -145.81 -134.57 REMARK 500 ASP B 287 43.82 -151.69 REMARK 500 ASP B 307 86.02 72.41 REMARK 500 GLN B 323 151.80 73.42 REMARK 500 PRO B 417 152.67 -47.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 438 0.09 SIDE CHAIN REMARK 500 ARG B 300 0.10 SIDE CHAIN REMARK 500 ARG B 328 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 8T2H A 126 490 UNP Q13627 DYR1A_HUMAN 126 490 DBREF 8T2H B 126 490 UNP Q13627 DYR1A_HUMAN 126 490 SEQRES 1 A 365 ASP SER SER HIS LYS LYS GLU ARG LYS VAL TYR ASN ASP SEQRES 2 A 365 GLY TYR ASP ASP ASP ASN TYR ASP TYR ILE VAL LYS ASN SEQRES 3 A 365 GLY GLU LYS TRP MET ASP ARG TYR GLU ILE ASP SER LEU SEQRES 4 A 365 ILE GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA TYR SEQRES 5 A 365 ASP ARG VAL GLU GLN GLU TRP VAL ALA ILE LYS ILE ILE SEQRES 6 A 365 LYS ASN LYS LYS ALA PHE LEU ASN GLN ALA GLN ILE GLU SEQRES 7 A 365 VAL ARG LEU LEU GLU LEU MET ASN LYS HIS ASP THR GLU SEQRES 8 A 365 MET LYS TYR TYR ILE VAL HIS LEU LYS ARG HIS PHE MET SEQRES 9 A 365 PHE ARG ASN HIS LEU CYS LEU VAL PHE GLU MET LEU SER SEQRES 10 A 365 TYR ASN LEU TYR ASP LEU LEU ARG ASN THR ASN PHE ARG SEQRES 11 A 365 GLY VAL SER LEU ASN LEU THR ARG LYS PHE ALA GLN GLN SEQRES 12 A 365 MET CYS THR ALA LEU LEU PHE LEU ALA THR PRO GLU LEU SEQRES 13 A 365 SER ILE ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE LEU SEQRES 14 A 365 LEU CYS ASN PRO LYS ARG SER ALA ILE LYS ILE VAL ASP SEQRES 15 A 365 PHE GLY SER SER CYS GLN LEU GLY GLN ARG ILE TYR GLN SEQRES 16 A 365 PTR ILE GLN SER ARG PHE TYR ARG SER PRO GLU VAL LEU SEQRES 17 A 365 LEU GLY MET PRO TYR ASP LEU ALA ILE ASP MET TRP SER SEQRES 18 A 365 LEU GLY CYS ILE LEU VAL GLU MET HIS THR GLY GLU PRO SEQRES 19 A 365 LEU PHE SER GLY ALA ASN GLU VAL ASP GLN MET ASN LYS SEQRES 20 A 365 ILE VAL GLU VAL LEU GLY ILE PRO PRO ALA HIS ILE LEU SEQRES 21 A 365 ASP GLN ALA PRO LYS ALA ARG LYS PHE PHE GLU LYS LEU SEQRES 22 A 365 PRO ASP GLY THR TRP ASN LEU LYS LYS THR LYS ASP GLY SEQRES 23 A 365 LYS ARG GLU TYR LYS PRO PRO GLY THR ARG LYS LEU HIS SEQRES 24 A 365 ASN ILE LEU GLY VAL GLU THR GLY GLY PRO GLY GLY ARG SEQRES 25 A 365 ARG ALA GLY GLU SER GLY HIS THR VAL ALA ASP TYR LEU SEQRES 26 A 365 LYS PHE LYS ASP LEU ILE LEU ARG MET LEU ASP TYR ASP SEQRES 27 A 365 PRO LYS THR ARG ILE GLN PRO TYR TYR ALA LEU GLN HIS SEQRES 28 A 365 SER PHE PHE LYS LYS THR ALA ASP GLU GLY THR ASN THR SEQRES 29 A 365 SER SEQRES 1 B 365 ASP SER SER HIS LYS LYS GLU ARG LYS VAL TYR ASN ASP SEQRES 2 B 365 GLY TYR ASP ASP ASP ASN TYR ASP TYR ILE VAL LYS ASN SEQRES 3 B 365 GLY GLU LYS TRP MET ASP ARG TYR GLU ILE ASP SER LEU SEQRES 4 B 365 ILE GLY LYS GLY SER PHE GLY GLN VAL VAL LYS ALA TYR SEQRES 5 B 365 ASP ARG VAL GLU GLN GLU TRP VAL ALA ILE LYS ILE ILE SEQRES 6 B 365 LYS ASN LYS LYS ALA PHE LEU ASN GLN ALA GLN ILE GLU SEQRES 7 B 365 VAL ARG LEU LEU GLU LEU MET ASN LYS HIS ASP THR GLU SEQRES 8 B 365 MET LYS TYR TYR ILE VAL HIS LEU LYS ARG HIS PHE MET SEQRES 9 B 365 PHE ARG ASN HIS LEU CYS LEU VAL PHE GLU MET LEU SER SEQRES 10 B 365 TYR ASN LEU TYR ASP LEU LEU ARG ASN THR ASN PHE ARG SEQRES 11 B 365 GLY VAL SER LEU ASN LEU THR ARG LYS PHE ALA GLN GLN SEQRES 12 B 365 MET CYS THR ALA LEU LEU PHE LEU ALA THR PRO GLU LEU SEQRES 13 B 365 SER ILE ILE HIS CYS ASP LEU LYS PRO GLU ASN ILE LEU SEQRES 14 B 365 LEU CYS ASN PRO LYS ARG SER ALA ILE LYS ILE VAL ASP SEQRES 15 B 365 PHE GLY SER SER CYS GLN LEU GLY GLN ARG ILE TYR GLN SEQRES 16 B 365 PTR ILE GLN SER ARG PHE TYR ARG SER PRO GLU VAL LEU SEQRES 17 B 365 LEU GLY MET PRO TYR ASP LEU ALA ILE ASP MET TRP SER SEQRES 18 B 365 LEU GLY CYS ILE LEU VAL GLU MET HIS THR GLY GLU PRO SEQRES 19 B 365 LEU PHE SER GLY ALA ASN GLU VAL ASP GLN MET ASN LYS SEQRES 20 B 365 ILE VAL GLU VAL LEU GLY ILE PRO PRO ALA HIS ILE LEU SEQRES 21 B 365 ASP GLN ALA PRO LYS ALA ARG LYS PHE PHE GLU LYS LEU SEQRES 22 B 365 PRO ASP GLY THR TRP ASN LEU LYS LYS THR LYS ASP GLY SEQRES 23 B 365 LYS ARG GLU TYR LYS PRO PRO GLY THR ARG LYS LEU HIS SEQRES 24 B 365 ASN ILE LEU GLY VAL GLU THR GLY GLY PRO GLY GLY ARG SEQRES 25 B 365 ARG ALA GLY GLU SER GLY HIS THR VAL ALA ASP TYR LEU SEQRES 26 B 365 LYS PHE LYS ASP LEU ILE LEU ARG MET LEU ASP TYR ASP SEQRES 27 B 365 PRO LYS THR ARG ILE GLN PRO TYR TYR ALA LEU GLN HIS SEQRES 28 B 365 SER PHE PHE LYS LYS THR ALA ASP GLU GLY THR ASN THR SEQRES 29 B 365 SER MODRES 8T2H PTR A 321 TYR MODIFIED RESIDUE MODRES 8T2H PTR B 321 TYR MODIFIED RESIDUE HET PTR A 321 16 HET PTR B 321 16 HET XIR A 500 31 HET PG4 A 501 13 HET GOL A 502 6 HET GOL A 503 6 HET XIR B 500 31 HET GOL B 501 6 HETNAM PTR O-PHOSPHOTYROSINE HETNAM XIR (4P)-4-{(3M)-3-[3-FLUORO-4-(4-METHYLPIPERAZIN-1-YL) HETNAM 2 XIR PHENYL]-2-METHYL-3H-IMIDAZO[4,5-B]PYRIDIN-5- HETNAM 3 XIR YL}PYRIDIN-2-AMINE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM GOL GLYCEROL HETSYN PTR PHOSPHONOTYROSINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 PTR 2(C9 H12 N O6 P) FORMUL 3 XIR 2(C23 H24 F N7) FORMUL 4 PG4 C8 H18 O5 FORMUL 5 GOL 3(C3 H8 O3) FORMUL 9 HOH *354(H2 O) HELIX 1 AA1 TYR A 136 TYR A 140 5 5 HELIX 2 AA2 LYS A 193 ASP A 214 1 22 HELIX 3 AA3 ASN A 244 THR A 252 1 9 HELIX 4 AA4 SER A 258 ALA A 277 1 20 HELIX 5 AA5 LYS A 289 GLU A 291 5 3 HELIX 6 AA6 SER A 324 ARG A 328 5 5 HELIX 7 AA7 SER A 329 LEU A 334 1 6 HELIX 8 AA8 LEU A 340 GLY A 357 1 18 HELIX 9 AA9 ASN A 365 GLY A 378 1 14 HELIX 10 AB1 PRO A 381 ASP A 386 1 6 HELIX 11 AB2 LYS A 390 PHE A 394 1 5 HELIX 12 AB3 LYS A 422 LEU A 427 1 6 HELIX 13 AB4 GLY A 433 ARG A 437 5 5 HELIX 14 AB5 THR A 445 LEU A 460 1 16 HELIX 15 AB6 GLN A 469 HIS A 476 1 8 HELIX 16 AB7 SER A 477 LYS A 480 5 4 HELIX 17 AB8 LYS B 193 LYS B 212 1 20 HELIX 18 AB9 ASN B 244 THR B 252 1 9 HELIX 19 AC1 SER B 258 ALA B 277 1 20 HELIX 20 AC2 LYS B 289 GLU B 291 5 3 HELIX 21 AC3 GLY B 315 ARG B 317 5 3 HELIX 22 AC4 SER B 324 ARG B 328 5 5 HELIX 23 AC5 SER B 329 LEU B 334 1 6 HELIX 24 AC6 LEU B 340 GLY B 357 1 18 HELIX 25 AC7 ASN B 365 GLY B 378 1 14 HELIX 26 AC8 PRO B 381 ASP B 386 1 6 HELIX 27 AC9 LYS B 390 PHE B 394 1 5 HELIX 28 AD1 LYS B 422 LEU B 427 1 6 HELIX 29 AD2 GLY B 433 ARG B 437 5 5 HELIX 30 AD3 THR B 445 LEU B 460 1 16 HELIX 31 AD4 GLN B 469 GLN B 475 1 7 HELIX 32 AD5 HIS B 476 LYS B 480 5 5 SHEET 1 AA1 6 LYS A 154 TRP A 155 0 SHEET 2 AA1 6 TYR A 159 GLY A 168 -1 O TYR A 159 N TRP A 155 SHEET 3 AA1 6 GLY A 171 ASP A 178 -1 O LYS A 175 N ASP A 162 SHEET 4 AA1 6 GLU A 183 ILE A 190 -1 O ILE A 187 N VAL A 174 SHEET 5 AA1 6 HIS A 233 GLU A 239 -1 O PHE A 238 N ALA A 186 SHEET 6 AA1 6 LEU A 224 PHE A 230 -1 N PHE A 228 O CYS A 235 SHEET 1 AA2 2 ILE A 283 ILE A 284 0 SHEET 2 AA2 2 CYS A 312 GLN A 313 -1 O CYS A 312 N ILE A 284 SHEET 1 AA3 2 ILE A 293 LEU A 295 0 SHEET 2 AA3 2 ILE A 303 ILE A 305 -1 O LYS A 304 N LEU A 294 SHEET 1 AA4 2 PHE A 395 LYS A 397 0 SHEET 2 AA4 2 TRP A 403 LEU A 405 -1 O ASN A 404 N GLU A 396 SHEET 1 AA5 6 LYS B 154 TRP B 155 0 SHEET 2 AA5 6 TYR B 159 GLY B 168 -1 O TYR B 159 N TRP B 155 SHEET 3 AA5 6 GLY B 171 ASP B 178 -1 O LYS B 175 N ASP B 162 SHEET 4 AA5 6 GLU B 183 ILE B 190 -1 O GLU B 183 N ASP B 178 SHEET 5 AA5 6 HIS B 233 GLU B 239 -1 O PHE B 238 N ALA B 186 SHEET 6 AA5 6 LEU B 224 PHE B 230 -1 N ARG B 226 O VAL B 237 SHEET 1 AA6 2 ILE B 283 ILE B 284 0 SHEET 2 AA6 2 CYS B 312 GLN B 313 -1 O CYS B 312 N ILE B 284 SHEET 1 AA7 2 ILE B 293 LEU B 295 0 SHEET 2 AA7 2 ILE B 303 ILE B 305 -1 O LYS B 304 N LEU B 294 SHEET 1 AA8 2 PHE B 395 LYS B 397 0 SHEET 2 AA8 2 TRP B 403 LEU B 405 -1 O ASN B 404 N GLU B 396 LINK C GLN A 320 N PTR A 321 1555 1555 1.35 LINK C PTR A 321 N ILE A 322 1555 1555 1.35 LINK C GLN B 320 N PTR B 321 1555 1555 1.34 LINK C PTR B 321 N ILE B 322 1555 1555 1.35 CRYST1 63.472 83.213 146.675 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015755 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012017 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006818 0.00000