HEADER LIGASE 14-JUN-23 8T5N TITLE CRYSTAL STRUCTURE OF GLYCINE--TRNA LIGASE FROM MYCOBACTERIUM TITLE 2 TUBERCULOSIS (AMP-MG BOUND) COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCYL-TRNA SYNTHETASE,GLYRS; COMPND 5 EC: 6.1.1.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: GLYQS, GLYS, RV2357C, MTCY27.23, MTCY98.26; SOURCE 5 EXPRESSION_SYSTEM: MYCOLICIBACTERIUM SMEGMATIS MC2 155; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 246196; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: MYTUD.19107.A.UW1 KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, GLYCINE--TRNA LIGASE, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 03-APR-24 8T5N 1 SOURCE REVDAT 1 28-JUN-23 8T5N 0 JRNL AUTH S.SEIBOLD,S.LOVELL,K.P.BATTAILE,A.DEROCHER JRNL TITL CRYSTAL STRUCTURE OF GLYCINE--TRNA LIGASE FROM MYCOBACTERIUM JRNL TITL 2 TUBERCULOSIS (AMP-MG BOUND) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.21RC1_4933: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.03 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 73150 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.0300 - 4.8900 0.99 2932 145 0.1934 0.2048 REMARK 3 2 4.8800 - 3.8800 1.00 2773 163 0.1297 0.1402 REMARK 3 3 3.8800 - 3.3900 1.00 2749 128 0.1472 0.1588 REMARK 3 4 3.3900 - 3.0800 1.00 2703 152 0.1526 0.1681 REMARK 3 5 3.0800 - 2.8600 1.00 2703 152 0.1540 0.1655 REMARK 3 6 2.8600 - 2.6900 1.00 2677 140 0.1447 0.1705 REMARK 3 7 2.6900 - 2.5600 1.00 2661 172 0.1426 0.1465 REMARK 3 8 2.5600 - 2.4400 1.00 2676 129 0.1390 0.1592 REMARK 3 9 2.4400 - 2.3500 1.00 2682 137 0.1387 0.1705 REMARK 3 10 2.3500 - 2.2700 1.00 2654 154 0.1434 0.1726 REMARK 3 11 2.2700 - 2.2000 1.00 2677 124 0.1476 0.1619 REMARK 3 12 2.2000 - 2.1400 1.00 2641 145 0.1544 0.1710 REMARK 3 13 2.1400 - 2.0800 1.00 2645 147 0.1493 0.1518 REMARK 3 14 2.0800 - 2.0300 1.00 2668 123 0.1427 0.1708 REMARK 3 15 2.0300 - 1.9800 1.00 2636 144 0.1481 0.1672 REMARK 3 16 1.9800 - 1.9400 1.00 2633 150 0.1499 0.2021 REMARK 3 17 1.9400 - 1.9000 1.00 2641 136 0.1592 0.1781 REMARK 3 18 1.9000 - 1.8700 1.00 2657 135 0.1648 0.1770 REMARK 3 19 1.8700 - 1.8300 1.00 2648 132 0.1750 0.1960 REMARK 3 20 1.8300 - 1.8000 1.00 2626 137 0.1840 0.2118 REMARK 3 21 1.8000 - 1.7700 1.00 2623 153 0.2059 0.2370 REMARK 3 22 1.7700 - 1.7400 1.00 2661 125 0.2215 0.2226 REMARK 3 23 1.7400 - 1.7200 1.00 2609 149 0.2271 0.2510 REMARK 3 24 1.7200 - 1.6900 1.00 2647 126 0.2056 0.1979 REMARK 3 25 1.6900 - 1.6700 1.00 2595 152 0.2108 0.2051 REMARK 3 26 1.6700 - 1.6500 1.00 2640 143 0.2211 0.2508 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 3393 REMARK 3 ANGLE : 0.976 4600 REMARK 3 CHIRALITY : 0.059 485 REMARK 3 PLANARITY : 0.013 599 REMARK 3 DIHEDRAL : 13.748 1238 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 70 ) REMARK 3 ORIGIN FOR THE GROUP (A): 47.4933 22.6641 2.4012 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.2086 REMARK 3 T33: 0.1744 T12: 0.0057 REMARK 3 T13: -0.0143 T23: -0.0370 REMARK 3 L TENSOR REMARK 3 L11: 0.9176 L22: 1.3881 REMARK 3 L33: 0.5029 L12: -0.4976 REMARK 3 L13: 0.0053 L23: -0.3554 REMARK 3 S TENSOR REMARK 3 S11: 0.0644 S12: 0.1081 S13: -0.1091 REMARK 3 S21: -0.0946 S22: -0.0334 S23: 0.0527 REMARK 3 S31: 0.1113 S32: -0.0653 S33: -0.0189 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 71 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9058 23.1225 6.3267 REMARK 3 T TENSOR REMARK 3 T11: 0.2052 T22: 0.3519 REMARK 3 T33: 0.3937 T12: -0.0381 REMARK 3 T13: -0.0263 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 4.0819 L22: 4.7327 REMARK 3 L33: 2.9842 L12: 0.1362 REMARK 3 L13: 0.1163 L23: 0.0096 REMARK 3 S TENSOR REMARK 3 S11: -0.0022 S12: 0.3300 S13: -0.2030 REMARK 3 S21: -0.3240 S22: -0.0020 S23: 0.8188 REMARK 3 S31: 0.2755 S32: -0.5193 S33: -0.0083 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 342 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.1614 36.2957 -3.0181 REMARK 3 T TENSOR REMARK 3 T11: 0.1596 T22: 0.2180 REMARK 3 T33: 0.1710 T12: 0.0089 REMARK 3 T13: -0.0048 T23: -0.0105 REMARK 3 L TENSOR REMARK 3 L11: 1.0358 L22: 1.1682 REMARK 3 L33: 1.1042 L12: -0.4511 REMARK 3 L13: -0.1387 L23: -0.0335 REMARK 3 S TENSOR REMARK 3 S11: 0.0723 S12: 0.1685 S13: -0.0178 REMARK 3 S21: -0.0989 S22: -0.0575 S23: 0.1156 REMARK 3 S31: 0.0457 S32: -0.1614 S33: -0.0085 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 353 THROUGH 461 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.5140 22.1288 1.8420 REMARK 3 T TENSOR REMARK 3 T11: 0.2116 T22: 0.2317 REMARK 3 T33: 0.3110 T12: 0.0417 REMARK 3 T13: -0.0119 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.8737 L22: 2.3812 REMARK 3 L33: 2.2113 L12: -0.4708 REMARK 3 L13: -0.0291 L23: 0.3759 REMARK 3 S TENSOR REMARK 3 S11: 0.0585 S12: 0.1177 S13: 0.0189 REMARK 3 S21: 0.1057 S22: -0.0386 S23: -0.5236 REMARK 3 S31: 0.1152 S32: 0.4173 S33: -0.0049 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T5N COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275313. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS-II REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 73239 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 45.140 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 35.10 REMARK 200 R MERGE (I) : 0.12300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 36.30 REMARK 200 R MERGE FOR SHELL (I) : 2.48900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS A2: 20%(V/V) ETHYLENE GLYCOL, REMARK 280 10%(W/V) PEG 8000, 100 MM IMIDAZOLE/MES, PH 6.5, 30 MM MGCL2 AND REMARK 280 30 MM CACL2. MYTUD.19107.A.UW1.PS38711 AT 24.9 MG/ML. 10 MM REMARK 280 MGCL2, 1 MM ATP ADDED PRIOR TO CRYSTALLIZATION. ATP HYDROLYZED REMARK 280 TO AMP. PLATE 13247 WELL A2 DROP 1. PUCK: PSL-0301, CRYO: DIRECT, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.00900 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.01800 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 64.51350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 107.52250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 21.50450 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 43.00900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 86.01800 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 107.52250 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 64.51350 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 21.50450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 21.50450 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 891 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 932 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 938 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 GLY A -7 REMARK 465 GLY A -6 REMARK 465 GLY A -5 REMARK 465 GLY A -4 REMARK 465 MET A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 PRO A 0 REMARK 465 VAL A 1 REMARK 465 ALA A 2 REMARK 465 LEU A 89 REMARK 465 VAL A 90 REMARK 465 GLU A 91 REMARK 465 SER A 92 REMARK 465 LEU A 93 REMARK 465 ILE A 94 REMARK 465 THR A 95 REMARK 465 HIS A 96 REMARK 465 LYS A 97 REMARK 465 ARG A 98 REMARK 465 TYR A 99 REMARK 465 ARG A 100 REMARK 465 ALA A 101 REMARK 465 ASP A 102 REMARK 465 HIS A 103 REMARK 465 LEU A 104 REMARK 465 ILE A 105 REMARK 465 GLU A 106 REMARK 465 ALA A 107 REMARK 465 TYR A 108 REMARK 465 GLU A 109 REMARK 465 ALA A 110 REMARK 465 LYS A 111 REMARK 465 HIS A 112 REMARK 465 GLY A 113 REMARK 465 HIS A 114 REMARK 465 PRO A 115 REMARK 465 PRO A 116 REMARK 465 PRO A 117 REMARK 465 ASN A 118 REMARK 465 GLY A 119 REMARK 465 LEU A 120 REMARK 465 ALA A 121 REMARK 465 ASP A 122 REMARK 465 ILE A 123 REMARK 465 ARG A 124 REMARK 465 ASP A 125 REMARK 465 PRO A 126 REMARK 465 GLU A 127 REMARK 465 THR A 128 REMARK 465 GLY A 129 REMARK 465 GLU A 130 REMARK 465 PRO A 131 REMARK 465 GLY A 132 REMARK 465 GLN A 133 REMARK 465 TRP A 134 REMARK 465 THR A 135 REMARK 465 GLN A 136 REMARK 465 PRO A 137 REMARK 465 GLU A 343 REMARK 465 ALA A 344 REMARK 465 PRO A 345 REMARK 465 ASN A 346 REMARK 465 THR A 347 REMARK 465 LYS A 348 REMARK 465 GLY A 349 REMARK 465 GLY A 350 REMARK 465 MET A 351 REMARK 465 ASP A 352 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 85 CG OD1 OD2 REMARK 470 ARG A 138 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 151 CG1 CG2 CD1 REMARK 470 GLU A 154 CG CD OE1 OE2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 ASP A 342 CG OD1 OD2 REMARK 470 LYS A 353 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 54 -87.65 -110.97 REMARK 500 PHE A 203 -122.00 59.35 REMARK 500 ARG A 265 134.63 -170.84 REMARK 500 THR A 290 -139.48 40.03 REMARK 500 ASP A 313 73.09 30.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 206 0.17 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 163 OE1 REMARK 620 2 HOH A 603 O 88.2 REMARK 620 3 HOH A 657 O 87.9 86.5 REMARK 620 4 HOH A 716 O 171.0 83.5 88.2 REMARK 620 5 HOH A 790 O 86.3 108.6 163.6 99.5 REMARK 620 6 HOH A 875 O 92.6 177.5 91.1 95.5 73.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 282 OE1 REMARK 620 2 HOH A 624 O 90.0 REMARK 620 3 HOH A 696 O 77.1 149.9 REMARK 620 4 HOH A 699 O 111.0 68.4 90.8 REMARK 620 5 HOH A 787 O 74.2 120.8 82.0 170.0 REMARK 620 6 HOH A 966 O 151.9 117.0 82.0 87.5 84.7 REMARK 620 N 1 2 3 4 5 DBREF 8T5N A -3 461 UNP P9WFV7 SYG_MYCTU 1 463 SEQADV 8T5N MET A -16 UNP P9WFV7 INITIATING METHIONINE SEQADV 8T5N HIS A -15 UNP P9WFV7 EXPRESSION TAG SEQADV 8T5N HIS A -14 UNP P9WFV7 EXPRESSION TAG SEQADV 8T5N HIS A -13 UNP P9WFV7 EXPRESSION TAG SEQADV 8T5N HIS A -12 UNP P9WFV7 EXPRESSION TAG SEQADV 8T5N HIS A -11 UNP P9WFV7 EXPRESSION TAG SEQADV 8T5N HIS A -10 UNP P9WFV7 EXPRESSION TAG SEQADV 8T5N HIS A -9 UNP P9WFV7 EXPRESSION TAG SEQADV 8T5N HIS A -8 UNP P9WFV7 EXPRESSION TAG SEQADV 8T5N GLY A -7 UNP P9WFV7 EXPRESSION TAG SEQADV 8T5N GLY A -6 UNP P9WFV7 EXPRESSION TAG SEQADV 8T5N GLY A -5 UNP P9WFV7 EXPRESSION TAG SEQADV 8T5N GLY A -4 UNP P9WFV7 EXPRESSION TAG SEQRES 1 A 476 MET HIS HIS HIS HIS HIS HIS HIS HIS GLY GLY GLY GLY SEQRES 2 A 476 MET HIS HIS PRO VAL ALA PRO VAL ILE ASP THR VAL VAL SEQRES 3 A 476 ASN LEU ALA LYS ARG ARG GLY PHE VAL TYR PRO SER GLY SEQRES 4 A 476 GLU ILE TYR GLY GLY THR LYS SER ALA TRP ASP TYR GLY SEQRES 5 A 476 PRO LEU GLY VAL GLU LEU LYS GLU ASN ILE LYS ARG GLN SEQRES 6 A 476 TRP TRP ARG SER VAL VAL THR GLY ARG ASP ASP VAL VAL SEQRES 7 A 476 GLY ILE ASP SER SER ILE ILE LEU PRO ARG GLU VAL TRP SEQRES 8 A 476 VAL ALA SER GLY HIS VAL ASP VAL PHE HIS ASP PRO LEU SEQRES 9 A 476 VAL GLU SER LEU ILE THR HIS LYS ARG TYR ARG ALA ASP SEQRES 10 A 476 HIS LEU ILE GLU ALA TYR GLU ALA LYS HIS GLY HIS PRO SEQRES 11 A 476 PRO PRO ASN GLY LEU ALA ASP ILE ARG ASP PRO GLU THR SEQRES 12 A 476 GLY GLU PRO GLY GLN TRP THR GLN PRO ARG GLU PHE ASN SEQRES 13 A 476 MET MET LEU LYS THR TYR LEU GLY PRO ILE GLU THR GLU SEQRES 14 A 476 GLU GLY LEU HIS TYR LEU ARG PRO GLU THR ALA GLN GLY SEQRES 15 A 476 ILE PHE VAL ASN PHE ALA ASN VAL VAL THR THR ALA ARG SEQRES 16 A 476 LYS LYS PRO PRO PHE GLY ILE GLY GLN ILE GLY LYS SER SEQRES 17 A 476 PHE ARG ASN GLU ILE THR PRO GLY ASN PHE ILE PHE ARG SEQRES 18 A 476 THR ARG GLU PHE GLU GLN MET GLU MET GLU PHE PHE VAL SEQRES 19 A 476 GLU PRO ALA THR ALA LYS GLU TRP HIS GLN TYR TRP ILE SEQRES 20 A 476 ASP ASN ARG LEU GLN TRP TYR ILE ASP LEU GLY ILE ARG SEQRES 21 A 476 ARG GLU ASN LEU ARG LEU TRP GLU HIS PRO LYS ASP LYS SEQRES 22 A 476 LEU SER HIS TYR SER ASP ARG THR VAL ASP ILE GLU TYR SEQRES 23 A 476 LYS PHE GLY PHE MET GLY ASN PRO TRP GLY GLU LEU GLU SEQRES 24 A 476 GLY VAL ALA ASN ARG THR ASP PHE ASP LEU SER THR HIS SEQRES 25 A 476 ALA ARG HIS SER GLY VAL ASP LEU SER PHE TYR ASP GLN SEQRES 26 A 476 ILE ASN ASP VAL ARG TYR THR PRO TYR VAL ILE GLU PRO SEQRES 27 A 476 ALA ALA GLY LEU THR ARG SER PHE MET ALA PHE LEU ILE SEQRES 28 A 476 ASP ALA TYR THR GLU ASP GLU ALA PRO ASN THR LYS GLY SEQRES 29 A 476 GLY MET ASP LYS ARG THR VAL LEU ARG LEU ASP PRO ARG SEQRES 30 A 476 LEU ALA PRO VAL LYS ALA ALA VAL LEU PRO LEU SER ARG SEQRES 31 A 476 HIS ALA ASP LEU SER PRO LYS ALA ARG ASP LEU GLY ALA SEQRES 32 A 476 GLU LEU ARG LYS CYS TRP ASN ILE ASP PHE ASP ASP ALA SEQRES 33 A 476 GLY ALA ILE GLY ARG ARG TYR ARG ARG GLN ASP GLU VAL SEQRES 34 A 476 GLY THR PRO PHE CYS VAL THR VAL ASP PHE ASP SER LEU SEQRES 35 A 476 GLN ASP ASN ALA VAL THR VAL ARG GLU ARG ASP ALA MET SEQRES 36 A 476 THR GLN ASP ARG VAL ALA MET SER SER VAL ALA ASP TYR SEQRES 37 A 476 LEU ALA VAL ARG LEU LYS GLY SER HET MG A 501 1 HET MG A 502 1 HET CA A 503 1 HET EDO A 504 4 HET EDO A 505 4 HET GOL A 506 6 HET IMD A 507 5 HET IMD A 508 5 HET IMD A 509 5 HET IMD A 510 5 HET IMD A 511 5 HET AMP A 512 23 HETNAM MG MAGNESIUM ION HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETNAM IMD IMIDAZOLE HETNAM AMP ADENOSINE MONOPHOSPHATE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 2(MG 2+) FORMUL 4 CA CA 2+ FORMUL 5 EDO 2(C2 H6 O2) FORMUL 7 GOL C3 H8 O3 FORMUL 8 IMD 5(C3 H5 N2 1+) FORMUL 13 AMP C10 H14 N5 O7 P FORMUL 14 HOH *368(H2 O) HELIX 1 AA1 PRO A 3 ARG A 15 1 13 HELIX 2 AA2 GLY A 22 GLY A 26 5 5 HELIX 3 AA3 GLY A 35 VAL A 54 1 20 HELIX 4 AA4 ARG A 71 SER A 77 1 7 HELIX 5 AA5 GLY A 78 PHE A 83 1 6 HELIX 6 AA6 THR A 164 VAL A 170 1 7 HELIX 7 AA7 ASN A 171 ARG A 180 1 10 HELIX 8 AA8 GLU A 220 ALA A 222 5 3 HELIX 9 AA9 THR A 223 LEU A 242 1 20 HELIX 10 AB1 ARG A 245 GLU A 247 5 3 HELIX 11 AB2 PRO A 255 LEU A 259 5 5 HELIX 12 AB3 ASP A 291 GLY A 302 1 12 HELIX 13 AB4 LEU A 327 ALA A 338 1 12 HELIX 14 AB5 LEU A 379 LYS A 392 1 14 HELIX 15 AB6 ALA A 403 GLU A 413 1 11 HELIX 16 AB7 ASP A 425 ASN A 430 1 6 HELIX 17 AB8 SER A 449 LEU A 458 1 10 SHEET 1 AA1 2 VAL A 18 PRO A 20 0 SHEET 2 AA1 2 TRP A 32 TYR A 34 -1 O ASP A 33 N TYR A 19 SHEET 1 AA2 7 VAL A 60 GLY A 62 0 SHEET 2 AA2 7 PHE A 185 PHE A 194 1 O GLY A 188 N VAL A 61 SHEET 3 AA2 7 GLU A 209 VAL A 219 -1 O PHE A 218 N PHE A 185 SHEET 4 AA2 7 TYR A 319 GLY A 326 -1 O ALA A 325 N MET A 213 SHEET 5 AA2 7 GLY A 281 ASN A 288 -1 N GLY A 285 O ALA A 324 SHEET 6 AA2 7 ARG A 265 TYR A 271 -1 N ILE A 269 O LEU A 283 SHEET 7 AA2 7 LEU A 249 GLU A 253 -1 N ARG A 250 O GLU A 270 SHEET 1 AA3 2 HIS A 84 ASP A 85 0 SHEET 2 AA3 2 PHE A 140 ASN A 141 -1 O PHE A 140 N ASP A 85 SHEET 1 AA4 2 LYS A 145 TYR A 147 0 SHEET 2 AA4 2 LEU A 157 TYR A 159 -1 O HIS A 158 N THR A 146 SHEET 1 AA5 2 PHE A 307 ASP A 309 0 SHEET 2 AA5 2 VAL A 314 TYR A 316 -1 O VAL A 314 N ASP A 309 SHEET 1 AA6 2 TYR A 339 GLU A 341 0 SHEET 2 AA6 2 THR A 355 LEU A 357 -1 O VAL A 356 N THR A 340 SHEET 1 AA7 5 ILE A 396 PHE A 398 0 SHEET 2 AA7 5 ALA A 368 PRO A 372 1 N VAL A 370 O ASP A 397 SHEET 3 AA7 5 PHE A 418 VAL A 422 1 O VAL A 420 N ALA A 369 SHEET 4 AA7 5 ALA A 431 GLU A 436 -1 O ARG A 435 N CYS A 419 SHEET 5 AA7 5 GLN A 442 ALA A 446 -1 O VAL A 445 N VAL A 432 LINK OE1 GLU A 163 MG MG A 501 1555 1555 2.09 LINK OE1 GLU A 282 MG MG A 502 1555 1555 2.56 LINK MG MG A 501 O HOH A 603 1555 1555 2.14 LINK MG MG A 501 O HOH A 657 1555 1555 2.15 LINK MG MG A 501 O HOH A 716 1555 1555 2.35 LINK MG MG A 501 O HOH A 790 1555 1555 2.11 LINK MG MG A 501 O HOH A 875 1555 1555 2.32 LINK MG MG A 502 O HOH A 624 1555 1555 2.19 LINK MG MG A 502 O HOH A 696 1555 1555 2.25 LINK MG MG A 502 O HOH A 699 1555 1555 2.32 LINK MG MG A 502 O HOH A 787 1555 1555 2.17 LINK MG MG A 502 O HOH A 966 1555 1555 2.26 LINK CA CA A 503 O HOH A 921 1555 1555 2.76 CISPEP 1 PRO A 183 PRO A 184 0 -0.22 CRYST1 126.355 126.355 129.027 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007914 0.004569 0.000000 0.00000 SCALE2 0.000000 0.009139 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007750 0.00000