HEADER VIRAL PROTEIN,HYDROLASE/INHIBITOR 14-JUN-23 8T5W TITLE INFLUENZA PAN ENDONUCLEASE I38T MUTANT WITH BALOXAVIR CAVEAT 8T5W E4Z A 303 HAS WRONG CHIRALITY AT ATOM C11 E4Z A 304 HAS CAVEAT 2 8T5W WRONG CHIRALITY AT ATOM C11 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE ACIDIC PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P2; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS (A/CALIFORNIA/04/2009(H1N1)); SOURCE 3 ORGANISM_TAXID: 641501; SOURCE 4 STRAIN: A/CALIFORNIA/04/2009(H1N1); SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INFLUENZA ENDONUCLEASE, RESISTANCE, DRUG DISCOVERY, METAL-BINDING KEYWDS 2 PHARMACOPHORE, ANTIVIRAL PROTEIN, VIRAL PROTEIN, HYDROLASE-INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.J.KOHLBRAND,S.M.COHEN REVDAT 1 12-JUN-24 8T5W 0 JRNL AUTH A.J.KOHLBRAND,R.W.STOKES,B.SANKARAN,S.M.COHEN JRNL TITL STRUCTURAL STUDIES OF INHIBITORS WITH CLINICALLY RELEVANT JRNL TITL 2 INFLUENZA ENDONUCLEASE VARIANTS. JRNL REF BIOCHEMISTRY V. 63 264 2024 JRNL REFN ISSN 0006-2960 JRNL PMID 38190441 JRNL DOI 10.1021/ACS.BIOCHEM.3C00536 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19.2_4158 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3678 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 57.3400 - 4.8900 0.99 1630 140 0.1956 0.2347 REMARK 3 2 4.8900 - 3.8800 1.00 1618 140 0.1468 0.1925 REMARK 3 3 3.8800 - 3.3900 1.00 1642 143 0.1751 0.1932 REMARK 3 4 3.3900 - 3.0800 1.00 1644 144 0.1905 0.2107 REMARK 3 5 3.0800 - 2.8600 1.00 1632 141 0.2116 0.2608 REMARK 3 6 2.8600 - 2.6900 1.00 1616 144 0.2210 0.2540 REMARK 3 7 2.6900 - 2.5600 1.00 1641 139 0.2227 0.2562 REMARK 3 8 2.5600 - 2.4400 1.00 1638 139 0.2118 0.2071 REMARK 3 9 2.4400 - 2.3500 1.00 1624 136 0.2171 0.2381 REMARK 3 10 2.3500 - 2.2700 1.00 1629 146 0.2204 0.2381 REMARK 3 11 2.2700 - 2.2000 1.00 1620 145 0.2061 0.2302 REMARK 3 12 2.2000 - 2.1400 1.00 1637 143 0.1946 0.3226 REMARK 3 13 2.1400 - 2.0800 1.00 1633 140 0.2410 0.2652 REMARK 3 14 2.0800 - 2.0300 1.00 1630 138 0.2302 0.2480 REMARK 3 15 2.0300 - 1.9800 1.00 1640 142 0.2268 0.2470 REMARK 3 16 1.9800 - 1.9400 1.00 1623 148 0.2358 0.2181 REMARK 3 17 1.9400 - 1.9000 1.00 1661 142 0.2322 0.2699 REMARK 3 18 1.9000 - 1.8700 1.00 1632 143 0.2468 0.2966 REMARK 3 19 1.8700 - 1.8300 1.00 1589 133 0.2711 0.2520 REMARK 3 20 1.8300 - 1.8000 1.00 1664 143 0.2776 0.3204 REMARK 3 21 1.8000 - 1.7700 1.00 1632 142 0.2838 0.3306 REMARK 3 22 1.7700 - 1.7400 1.00 1613 137 0.3323 0.3561 REMARK 3 23 1.7400 - 1.7200 1.00 1651 147 0.3539 0.3776 REMARK 3 24 1.7200 - 1.6900 1.00 1619 139 0.3065 0.3414 REMARK 3 25 1.6900 - 1.6700 1.00 1615 141 0.2932 0.3303 REMARK 3 26 1.6700 - 1.6500 0.99 1620 143 0.2958 0.3247 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.405 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.56 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1569 REMARK 3 ANGLE : 1.553 2118 REMARK 3 CHIRALITY : 0.106 217 REMARK 3 PLANARITY : 0.009 265 REMARK 3 DIHEDRAL : 9.389 204 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.4808 6.1965 -17.2079 REMARK 3 T TENSOR REMARK 3 T11: 0.3957 T22: 0.5067 REMARK 3 T33: 0.4512 T12: 0.0524 REMARK 3 T13: -0.0207 T23: -0.1104 REMARK 3 L TENSOR REMARK 3 L11: 4.3857 L22: 4.5877 REMARK 3 L33: 8.4449 L12: 4.1581 REMARK 3 L13: -1.2993 L23: -2.4558 REMARK 3 S TENSOR REMARK 3 S11: -0.1276 S12: 1.4050 S13: -1.3983 REMARK 3 S21: -0.6809 S22: 0.1312 S23: -1.3483 REMARK 3 S31: 1.0702 S32: 0.6599 S33: -0.0710 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 11 THROUGH 23 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2060 5.5126 -19.5884 REMARK 3 T TENSOR REMARK 3 T11: 0.3833 T22: 0.3984 REMARK 3 T33: 0.3596 T12: 0.0063 REMARK 3 T13: -0.0028 T23: -0.0638 REMARK 3 L TENSOR REMARK 3 L11: 9.7351 L22: 4.1494 REMARK 3 L33: 4.5615 L12: -3.1261 REMARK 3 L13: 3.9512 L23: -4.2353 REMARK 3 S TENSOR REMARK 3 S11: 0.2449 S12: 1.0703 S13: -0.4411 REMARK 3 S21: -0.9704 S22: -0.1580 S23: 0.2615 REMARK 3 S31: 0.7587 S32: -0.3849 S33: -0.0876 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.5985 13.2911 -25.9726 REMARK 3 T TENSOR REMARK 3 T11: 0.4258 T22: 0.6867 REMARK 3 T33: 0.2160 T12: -0.0007 REMARK 3 T13: -0.0488 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 7.6789 L22: 7.5587 REMARK 3 L33: 5.9994 L12: 3.3003 REMARK 3 L13: -2.7502 L23: -2.5904 REMARK 3 S TENSOR REMARK 3 S11: 0.1917 S12: 0.9302 S13: 0.5273 REMARK 3 S21: -0.9084 S22: -0.2174 S23: 0.3564 REMARK 3 S31: -0.0538 S32: -1.7763 S33: 0.1051 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 50 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.4773 10.5988 -10.7164 REMARK 3 T TENSOR REMARK 3 T11: 0.2452 T22: 0.2518 REMARK 3 T33: 0.2484 T12: 0.0074 REMARK 3 T13: -0.0248 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 9.0242 L22: 2.2546 REMARK 3 L33: 3.1073 L12: 1.2382 REMARK 3 L13: -4.9213 L23: 0.3179 REMARK 3 S TENSOR REMARK 3 S11: -0.0035 S12: 0.2379 S13: -0.1687 REMARK 3 S21: -0.0749 S22: 0.0057 S23: 0.0027 REMARK 3 S31: 0.1313 S32: -0.2305 S33: 0.1002 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 51 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.3640 13.9211 -7.8388 REMARK 3 T TENSOR REMARK 3 T11: 0.2294 T22: 0.2860 REMARK 3 T33: 0.2717 T12: 0.0367 REMARK 3 T13: 0.0200 T23: 0.0424 REMARK 3 L TENSOR REMARK 3 L11: 6.5130 L22: 1.6363 REMARK 3 L33: 1.9562 L12: 0.6335 REMARK 3 L13: 0.2011 L23: 0.1639 REMARK 3 S TENSOR REMARK 3 S11: 0.0969 S12: -0.3329 S13: 0.0227 REMARK 3 S21: 0.0227 S22: -0.1042 S23: 0.3460 REMARK 3 S31: 0.0349 S32: -0.3861 S33: 0.0184 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 138 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.9431 27.6639 -8.3129 REMARK 3 T TENSOR REMARK 3 T11: 0.3932 T22: 0.2499 REMARK 3 T33: 0.4967 T12: 0.0120 REMARK 3 T13: -0.0228 T23: 0.0188 REMARK 3 L TENSOR REMARK 3 L11: 6.7831 L22: 3.3341 REMARK 3 L33: 7.0651 L12: -4.6815 REMARK 3 L13: 3.3338 L23: -2.5704 REMARK 3 S TENSOR REMARK 3 S11: -0.2054 S12: 0.2756 S13: 1.1684 REMARK 3 S21: -0.3844 S22: -0.2962 S23: -0.3055 REMARK 3 S31: -0.5533 S32: -0.1297 S33: 0.4266 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 139 THROUGH 149 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.2201 22.6875 -4.0497 REMARK 3 T TENSOR REMARK 3 T11: 0.2870 T22: 0.3495 REMARK 3 T33: 0.5326 T12: 0.0225 REMARK 3 T13: 0.0197 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 7.2742 L22: 4.6684 REMARK 3 L33: 7.3276 L12: 3.6296 REMARK 3 L13: -3.3111 L23: 0.2411 REMARK 3 S TENSOR REMARK 3 S11: -0.5542 S12: 0.1247 S13: 0.9579 REMARK 3 S21: -0.0360 S22: 0.4180 S23: 1.2089 REMARK 3 S31: -0.5666 S32: -1.0224 S33: 0.1747 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 150 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3754 20.3730 2.1744 REMARK 3 T TENSOR REMARK 3 T11: 0.2693 T22: 0.3582 REMARK 3 T33: 0.3418 T12: 0.0053 REMARK 3 T13: -0.0137 T23: -0.0409 REMARK 3 L TENSOR REMARK 3 L11: 2.9321 L22: 4.7368 REMARK 3 L33: 6.7487 L12: -1.5391 REMARK 3 L13: -2.2204 L23: 0.7752 REMARK 3 S TENSOR REMARK 3 S11: 0.0143 S12: -1.0231 S13: 0.4802 REMARK 3 S21: 0.2144 S22: -0.0078 S23: -0.0226 REMARK 3 S31: -0.3191 S32: 0.0918 S33: 0.0089 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 185 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0923 12.0657 -2.8467 REMARK 3 T TENSOR REMARK 3 T11: 0.2144 T22: 0.2646 REMARK 3 T33: 0.2428 T12: -0.0053 REMARK 3 T13: -0.0517 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 4.8932 L22: 4.9300 REMARK 3 L33: 4.7819 L12: -1.0034 REMARK 3 L13: -1.3511 L23: 0.3363 REMARK 3 S TENSOR REMARK 3 S11: 0.0173 S12: -0.2917 S13: -0.2055 REMARK 3 S21: -0.0008 S22: -0.0463 S23: 0.1489 REMARK 3 S31: 0.1756 S32: 0.2642 S33: 0.0664 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 186 THROUGH 197 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5059 21.7089 -15.2876 REMARK 3 T TENSOR REMARK 3 T11: 0.3233 T22: 0.2997 REMARK 3 T33: 0.2582 T12: -0.0058 REMARK 3 T13: 0.0351 T23: 0.0753 REMARK 3 L TENSOR REMARK 3 L11: 6.7032 L22: 5.1929 REMARK 3 L33: 7.5721 L12: -2.0138 REMARK 3 L13: 1.8506 L23: -3.5235 REMARK 3 S TENSOR REMARK 3 S11: -0.1034 S12: -0.1389 S13: 0.3458 REMARK 3 S21: 0.2741 S22: 0.0632 S23: 0.0009 REMARK 3 S31: -0.9458 S32: 0.4477 S33: 0.0609 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8T5W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46072 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 57.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 20.70 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 32% PEG (MW 4000 G/MOL), 100 MM TRIS REMARK 280 (PH 8.35), AND 220 MM SODIUM ACETATE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 306K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+2/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.96267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 40.48133 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 80.96267 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.48133 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 80.96267 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 40.48133 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 80.96267 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 40.48133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 421 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -5 REMARK 465 GLY A -4 REMARK 465 SER A -3 REMARK 465 GLY A -2 REMARK 465 GLY A 64 REMARK 465 SER A 65 REMARK 465 GLY A 66 REMARK 465 ASP A 67 REMARK 465 PRO A 68 REMARK 465 ASN A 69 REMARK 465 ALA A 70 REMARK 465 LEU A 71 REMARK 465 LEU A 72 REMARK 465 LYS A 73 REMARK 465 HIS A 74 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PHE A 51 CB CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O2 E4Z A 304 O2 E4Z A 304 8555 1.22 REMARK 500 OD2 ASP A 50 O2 E4Z A 304 8555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 139 1.73 58.73 REMARK 500 LYS A 158 18.66 56.22 REMARK 500 THR A 162 -56.30 66.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 94.6 REMARK 620 3 GLU A 119 OE2 177.0 86.8 REMARK 620 4 ILE A 120 O 88.2 91.0 89.1 REMARK 620 5 E4Z A 303 O2 88.5 101.2 93.9 167.6 REMARK 620 6 E4Z A 303 O1 91.7 173.0 87.1 92.2 75.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 89.2 REMARK 620 3 E4Z A 303 O2 104.5 88.3 REMARK 620 4 E4Z A 303 O3 86.0 172.8 87.7 REMARK 620 5 HOH A 407 O 171.0 88.1 84.0 97.4 REMARK 620 6 HOH A 457 O 87.4 96.3 167.4 88.8 84.4 REMARK 620 N 1 2 3 4 5 DBREF 8T5W A 1 198 UNP C3W5S0 C3W5S0_I09A0 1 198 SEQADV 8T5W MET A -5 UNP C3W5S0 INITIATING METHIONINE SEQADV 8T5W GLY A -4 UNP C3W5S0 EXPRESSION TAG SEQADV 8T5W SER A -3 UNP C3W5S0 EXPRESSION TAG SEQADV 8T5W GLY A -2 UNP C3W5S0 EXPRESSION TAG SEQADV 8T5W SER A -1 UNP C3W5S0 EXPRESSION TAG SEQADV 8T5W ALA A 0 UNP C3W5S0 EXPRESSION TAG SEQADV 8T5W THR A 38 UNP C3W5S0 ILE 38 ENGINEERED MUTATION SEQADV 8T5W GLY A 64 UNP C3W5S0 HIS 52 CONFLICT SEQADV 8T5W A UNP C3W5S0 PHE 53 DELETION SEQADV 8T5W A UNP C3W5S0 ILE 54 DELETION SEQADV 8T5W A UNP C3W5S0 ASP 55 DELETION SEQADV 8T5W A UNP C3W5S0 GLU 56 DELETION SEQADV 8T5W A UNP C3W5S0 ARG 57 DELETION SEQADV 8T5W A UNP C3W5S0 GLY 58 DELETION SEQADV 8T5W A UNP C3W5S0 GLU 59 DELETION SEQADV 8T5W A UNP C3W5S0 SER 60 DELETION SEQADV 8T5W A UNP C3W5S0 ILE 61 DELETION SEQADV 8T5W A UNP C3W5S0 ILE 62 DELETION SEQADV 8T5W A UNP C3W5S0 VAL 63 DELETION SEQADV 8T5W A UNP C3W5S0 GLU 64 DELETION SEQRES 1 A 192 MET GLY SER GLY SER ALA MET GLU ASP PHE VAL ARG GLN SEQRES 2 A 192 CYS PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS ALA SEQRES 3 A 192 MET LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR ASN SEQRES 4 A 192 LYS PHE ALA ALA THR CYS THR HIS LEU GLU VAL CYS PHE SEQRES 5 A 192 MET TYR SER ASP PHE GLY SER GLY ASP PRO ASN ALA LEU SEQRES 6 A 192 LEU LYS HIS ARG PHE GLU ILE ILE GLU GLY ARG ASP ARG SEQRES 7 A 192 ILE MET ALA TRP THR VAL VAL ASN SER ILE CYS ASN THR SEQRES 8 A 192 THR GLY VAL GLU LYS PRO LYS PHE LEU PRO ASP LEU TYR SEQRES 9 A 192 ASP TYR LYS GLU ASN ARG PHE ILE GLU ILE GLY VAL THR SEQRES 10 A 192 ARG ARG GLU VAL HIS ILE TYR TYR LEU GLU LYS ALA ASN SEQRES 11 A 192 LYS ILE LYS SER GLU LYS THR HIS ILE HIS ILE PHE SER SEQRES 12 A 192 PHE THR GLY GLU GLU MET ALA THR LYS ALA ASP TYR THR SEQRES 13 A 192 LEU ASP GLU GLU SER ARG ALA ARG ILE LYS THR ARG LEU SEQRES 14 A 192 PHE THR ILE ARG GLN GLU MET ALA SER ARG SER LEU TRP SEQRES 15 A 192 ASP SER PHE ARG GLN SER GLU ARG GLY GLU HET MN A 301 1 HET MN A 302 1 HET E4Z A 303 52 HET E4Z A 304 52 HETNAM MN MANGANESE (II) ION HETNAM E4Z BALOXAVIR ACID FORMUL 2 MN 2(MN 2+) FORMUL 4 E4Z 2(C24 H19 F2 N3 O4 S) FORMUL 6 HOH *95(H2 O) HELIX 1 AA1 SER A -1 PHE A 9 1 11 HELIX 2 AA2 ASN A 10 TYR A 24 1 15 HELIX 3 AA3 GLU A 31 PHE A 51 1 21 HELIX 4 AA4 ASP A 83 GLY A 99 1 17 HELIX 5 AA5 GLU A 126 LYS A 139 1 14 HELIX 6 AA6 LYS A 158 ASP A 160 5 3 HELIX 7 AA7 ASP A 164 ARG A 185 1 22 HELIX 8 AA8 LEU A 187 GLU A 195 1 9 SHEET 1 AA1 5 PHE A 76 ILE A 78 0 SHEET 2 AA1 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 AA1 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 AA1 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 AA1 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.32 LINK OE1 GLU A 80 MN MN A 302 1555 1555 2.14 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.20 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.07 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.20 LINK O ILE A 120 MN MN A 301 1555 1555 2.14 LINK MN MN A 301 O2 E4Z A 303 1555 1555 2.14 LINK MN MN A 301 O1 E4Z A 303 1555 1555 2.16 LINK MN MN A 302 O2 E4Z A 303 1555 1555 2.11 LINK MN MN A 302 O3 E4Z A 303 1555 1555 2.05 LINK MN MN A 302 O HOH A 407 1555 1555 2.28 LINK MN MN A 302 O HOH A 457 1555 1555 2.17 CRYST1 75.111 75.111 121.444 90.00 90.00 120.00 P 62 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013314 0.007687 0.000000 0.00000 SCALE2 0.000000 0.015373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008234 0.00000