HEADER IMMUNE SYSTEM 18-JUN-23 8T6T TITLE SPRY-CAS9:GRNA COMPLEX TARGETING TAC PAM DNA WITH 13 BP R-LOOP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CRISPR-ASSOCIATED ENDONUCLEASE CAS9/CSN1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SPCAS9,SPYCAS9; COMPND 5 EC: 3.1.-.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GRNA; COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: TS; COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES; COMPND 16 MOL_ID: 4; COMPND 17 MOLECULE: NTS; COMPND 18 CHAIN: D; COMPND 19 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 3 ORGANISM_TAXID: 1314; SOURCE 4 GENE: CAS9, CSN1, SPY_1046; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PYOGENES; SOURCE 10 ORGANISM_TAXID: 1314; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE LAMBDA; SOURCE 14 ORGANISM_TAXID: 2681611; SOURCE 15 MOL_ID: 4; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: ESCHERICHIA PHAGE LAMBDA; SOURCE 18 ORGANISM_TAXID: 2681611 KEYWDS SPRY-CAS9, CRISPR, CAS9, IMMUNE SYSTEM, R-LOOP EXPDTA ELECTRON MICROSCOPY AUTHOR G.N.HIBSHMAN,J.P.K.BRAVO,D.W.TAYLOR REVDAT 2 15-MAY-24 8T6T 1 JRNL REVDAT 1 01-MAY-24 8T6T 0 JRNL AUTH G.N.HIBSHMAN,J.P.K.BRAVO,M.M.HOOPER,T.L.DANGERFIELD,H.ZHANG, JRNL AUTH 2 I.J.FINKELSTEIN,K.A.JOHNSON,D.W.TAYLOR JRNL TITL UNRAVELING THE MECHANISMS OF PAMLESS DNA INTERROGATION BY JRNL TITL 2 SPRY-CAS9. JRNL REF NAT COMMUN V. 15 3663 2024 JRNL REFN ESSN 2041-1723 JRNL PMID 38688943 JRNL DOI 10.1038/S41467-024-47830-3 REMARK 2 REMARK 2 RESOLUTION. 3.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 3.040 REMARK 3 NUMBER OF PARTICLES : 100084 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8T6T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275398. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TERNARY COMPLEX OF SPRY-CAS9 REMARK 245 WITH GRNA AND NAC PAM DNA AFTER REMARK 245 ONE MINUTE OF DNA INCUBATION REMARK 245 WITH 13 BP R-LOOP REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.50 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1500.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 2500.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 8000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASP A 2 REMARK 465 GLY A 283 REMARK 465 ASP A 284 REMARK 465 GLN A 285 REMARK 465 TYR A 286 REMARK 465 ALA A 287 REMARK 465 GLU A 573 REMARK 465 CYS A 574 REMARK 465 PHE A 575 REMARK 465 ASP A 576 REMARK 465 SER A 577 REMARK 465 VAL A 578 REMARK 465 GLU A 579 REMARK 465 ILE A 580 REMARK 465 SER A 581 REMARK 465 GLY A 582 REMARK 465 VAL A 583 REMARK 465 GLU A 584 REMARK 465 ASP A 585 REMARK 465 ARG A 586 REMARK 465 PHE A 587 REMARK 465 VAL A 713 REMARK 465 SER A 714 REMARK 465 GLY A 715 REMARK 465 GLN A 716 REMARK 465 GLY A 717 REMARK 465 ASN A 767 REMARK 465 GLN A 768 REMARK 465 THR A 769 REMARK 465 THR A 770 REMARK 465 GLN A 771 REMARK 465 LYS A 772 REMARK 465 GLY A 773 REMARK 465 GLN A 774 REMARK 465 LYS A 775 REMARK 465 ASN A 776 REMARK 465 SER A 777 REMARK 465 ARG A 778 REMARK 465 GLU A 779 REMARK 465 ARG A 780 REMARK 465 MET A 781 REMARK 465 LYS A 782 REMARK 465 ARG A 783 REMARK 465 ILE A 784 REMARK 465 GLU A 785 REMARK 465 GLU A 786 REMARK 465 GLY A 787 REMARK 465 ILE A 788 REMARK 465 LYS A 789 REMARK 465 GLU A 790 REMARK 465 LEU A 791 REMARK 465 GLY A 792 REMARK 465 SER A 793 REMARK 465 GLN A 794 REMARK 465 ILE A 795 REMARK 465 LEU A 796 REMARK 465 LYS A 797 REMARK 465 GLU A 798 REMARK 465 HIS A 799 REMARK 465 PRO A 800 REMARK 465 VAL A 801 REMARK 465 GLU A 802 REMARK 465 ASN A 803 REMARK 465 THR A 804 REMARK 465 GLN A 805 REMARK 465 LEU A 806 REMARK 465 GLN A 807 REMARK 465 ASN A 808 REMARK 465 GLU A 809 REMARK 465 LYS A 810 REMARK 465 LEU A 811 REMARK 465 TYR A 812 REMARK 465 LEU A 813 REMARK 465 TYR A 814 REMARK 465 TYR A 815 REMARK 465 LEU A 816 REMARK 465 GLN A 817 REMARK 465 ASN A 818 REMARK 465 GLY A 819 REMARK 465 ARG A 820 REMARK 465 ASP A 821 REMARK 465 MET A 822 REMARK 465 TYR A 823 REMARK 465 VAL A 824 REMARK 465 ASP A 825 REMARK 465 GLN A 826 REMARK 465 GLU A 827 REMARK 465 LEU A 828 REMARK 465 ASP A 829 REMARK 465 ILE A 830 REMARK 465 ASN A 831 REMARK 465 ARG A 832 REMARK 465 LEU A 833 REMARK 465 SER A 834 REMARK 465 ASP A 835 REMARK 465 TYR A 836 REMARK 465 ASP A 837 REMARK 465 VAL A 838 REMARK 465 ASP A 839 REMARK 465 HIS A 840 REMARK 465 ILE A 841 REMARK 465 VAL A 842 REMARK 465 PRO A 843 REMARK 465 GLN A 844 REMARK 465 SER A 845 REMARK 465 PHE A 846 REMARK 465 LEU A 847 REMARK 465 LYS A 848 REMARK 465 ASP A 849 REMARK 465 ASP A 850 REMARK 465 SER A 851 REMARK 465 ILE A 852 REMARK 465 ASP A 853 REMARK 465 ASN A 854 REMARK 465 LYS A 855 REMARK 465 VAL A 856 REMARK 465 LEU A 857 REMARK 465 THR A 858 REMARK 465 ARG A 859 REMARK 465 SER A 860 REMARK 465 ASP A 861 REMARK 465 LYS A 862 REMARK 465 ASN A 863 REMARK 465 ARG A 864 REMARK 465 GLY A 865 REMARK 465 LYS A 866 REMARK 465 SER A 867 REMARK 465 ASP A 868 REMARK 465 ASN A 869 REMARK 465 VAL A 870 REMARK 465 PRO A 871 REMARK 465 SER A 872 REMARK 465 GLU A 873 REMARK 465 GLU A 874 REMARK 465 VAL A 875 REMARK 465 VAL A 876 REMARK 465 LYS A 877 REMARK 465 LYS A 878 REMARK 465 MET A 879 REMARK 465 LYS A 880 REMARK 465 ASN A 881 REMARK 465 TYR A 882 REMARK 465 TRP A 883 REMARK 465 ARG A 884 REMARK 465 GLN A 885 REMARK 465 LEU A 886 REMARK 465 LEU A 887 REMARK 465 ASN A 888 REMARK 465 ALA A 889 REMARK 465 LYS A 890 REMARK 465 LEU A 891 REMARK 465 ILE A 892 REMARK 465 THR A 893 REMARK 465 GLN A 894 REMARK 465 ARG A 895 REMARK 465 LYS A 896 REMARK 465 PHE A 897 REMARK 465 ASP A 898 REMARK 465 ASN A 899 REMARK 465 LEU A 900 REMARK 465 THR A 901 REMARK 465 LYS A 902 REMARK 465 ALA A 903 REMARK 465 GLU A 904 REMARK 465 ARG A 905 REMARK 465 GLY A 906 REMARK 465 GLY A 907 REMARK 465 LEU A 908 REMARK 465 SER A 909 REMARK 465 GLU A 910 REMARK 465 LEU A 911 REMARK 465 ASP A 912 REMARK 465 LYS A 913 REMARK 465 ALA A 914 REMARK 465 GLY A 915 REMARK 465 PHE A 916 REMARK 465 ILE A 917 REMARK 465 GLY A 1011 REMARK 465 ASP A 1012 REMARK 465 TYR A 1013 REMARK 465 LYS A 1014 REMARK 465 VAL A 1015 REMARK 465 TYR A 1016 REMARK 465 ASP A 1017 REMARK 465 VAL A 1018 REMARK 465 ARG A 1019 REMARK 465 LYS A 1020 REMARK 465 MET A 1021 REMARK 465 ILE A 1022 REMARK 465 ALA A 1023 REMARK 465 LYS A 1024 REMARK 465 SER A 1025 REMARK 465 GLU A 1026 REMARK 465 GLN A 1027 REMARK 465 GLU A 1028 REMARK 465 ILE A 1029 REMARK 465 GLY A 1030 REMARK 465 GLY A 1367 REMARK 465 ASP A 1368 REMARK 465 DA D 25 REMARK 465 DA D 26 REMARK 465 DG D 27 REMARK 465 DA D 28 REMARK 465 DT D 29 REMARK 465 DG D 30 REMARK 465 DA D 31 REMARK 465 DG D 32 REMARK 465 DA D 33 REMARK 465 DC D 34 REMARK 465 DG D 35 REMARK 465 DC D 36 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 DT D 37 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 628 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 LEU A 651 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 C B 20 C6 - N1 - C2 ANGL. DEV. = -2.5 DEGREES REMARK 500 C B 96 C2 - N1 - C1' ANGL. DEV. = 6.7 DEGREES REMARK 500 DG C 12 O4' - C1' - C2' ANGL. DEV. = 4.1 DEGREES REMARK 500 DG C 12 N9 - C1' - C2' ANGL. DEV. = 9.6 DEGREES REMARK 500 DG C 12 O4' - C1' - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 DT C 13 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DA C 14 OP1 - P - OP2 ANGL. DEV. = -11.2 DEGREES REMARK 500 DA C 14 P - O5' - C5' ANGL. DEV. = 13.6 DEGREES REMARK 500 DA C 14 O4' - C1' - C2' ANGL. DEV. = 3.4 DEGREES REMARK 500 DA C 14 O4' - C1' - N9 ANGL. DEV. = 10.7 DEGREES REMARK 500 DC C 15 O3' - P - OP1 ANGL. DEV. = 13.0 DEGREES REMARK 500 DC C 15 OP1 - P - OP2 ANGL. DEV. = -12.6 DEGREES REMARK 500 DC C 15 N1 - C1' - C2' ANGL. DEV. = 16.3 DEGREES REMARK 500 DC C 15 O4' - C1' - N1 ANGL. DEV. = 6.4 DEGREES REMARK 500 DC C 15 C5 - C6 - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 DG C 17 O3' - P - OP1 ANGL. DEV. = 10.9 DEGREES REMARK 500 DG C 17 OP1 - P - OP2 ANGL. DEV. = -11.6 DEGREES REMARK 500 DG C 17 O4' - C1' - C2' ANGL. DEV. = 3.4 DEGREES REMARK 500 DG C 17 N9 - C1' - C2' ANGL. DEV. = 9.6 DEGREES REMARK 500 DG C 17 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 DG C 17 C4 - N9 - C1' ANGL. DEV. = -8.9 DEGREES REMARK 500 DA C 19 O3' - P - OP1 ANGL. DEV. = 11.6 DEGREES REMARK 500 DA C 19 OP1 - P - OP2 ANGL. DEV. = -11.4 DEGREES REMARK 500 DA C 19 O4' - C1' - C2' ANGL. DEV. = 3.7 DEGREES REMARK 500 DA C 19 O4' - C1' - N9 ANGL. DEV. = 9.5 DEGREES REMARK 500 DA C 19 C4 - N9 - C1' ANGL. DEV. = -11.6 DEGREES REMARK 500 DG C 20 O3' - P - OP1 ANGL. DEV. = -16.3 DEGREES REMARK 500 DG C 20 P - O5' - C5' ANGL. DEV. = -14.6 DEGREES REMARK 500 DG C 20 O4' - C1' - C2' ANGL. DEV. = 4.2 DEGREES REMARK 500 DG C 20 O4' - C1' - N9 ANGL. DEV. = 9.0 DEGREES REMARK 500 DG C 20 N3 - C4 - C5 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG C 20 N3 - C4 - N9 ANGL. DEV. = -5.4 DEGREES REMARK 500 DG C 20 C6 - C5 - N7 ANGL. DEV. = 5.8 DEGREES REMARK 500 DG C 20 N3 - C2 - N2 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG C 20 N1 - C6 - O6 ANGL. DEV. = -3.8 DEGREES REMARK 500 DG C 20 C8 - N9 - C1' ANGL. DEV. = 12.2 DEGREES REMARK 500 DG C 20 C4 - N9 - C1' ANGL. DEV. = -13.5 DEGREES REMARK 500 DC C 21 C5' - C4' - C3' ANGL. DEV. = 7.7 DEGREES REMARK 500 DC C 21 N1 - C1' - C2' ANGL. DEV. = 9.5 DEGREES REMARK 500 DC C 21 O4' - C1' - N1 ANGL. DEV. = 12.8 DEGREES REMARK 500 DC C 21 C6 - N1 - C1' ANGL. DEV. = 8.4 DEGREES REMARK 500 DC C 21 C2 - N1 - C1' ANGL. DEV. = -7.1 DEGREES REMARK 500 DG C 22 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 DC C 24 O3' - P - OP1 ANGL. DEV. = 13.2 DEGREES REMARK 500 DC C 24 OP1 - P - OP2 ANGL. DEV. = -13.2 DEGREES REMARK 500 DC C 24 O4' - C1' - N1 ANGL. DEV. = 7.2 DEGREES REMARK 500 DC C 26 O3' - P - OP1 ANGL. DEV. = 10.4 DEGREES REMARK 500 DC C 26 OP1 - P - OP2 ANGL. DEV. = -11.2 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 94 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 23 0.02 -68.44 REMARK 500 SER A 104 -38.83 -39.86 REMARK 500 ASN A 240 41.54 74.01 REMARK 500 GLN A 354 30.77 -96.70 REMARK 500 LEU A 552 -62.67 -97.38 REMARK 500 ASP A 567 -52.86 -121.27 REMARK 500 LEU A 591 55.58 -117.46 REMARK 500 ILE A 600 -62.72 -101.61 REMARK 500 ALA A 764 17.60 58.57 REMARK 500 LEU A1206 -166.01 -122.67 REMARK 500 HIS A1262 48.31 -108.39 REMARK 500 TYR A1326 -159.10 -86.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-41080 RELATED DB: EMDB REMARK 900 SPRY-CAS9:GRNA COMPLEX TARGETING TAC PAM DNA WITH 13 BP R-LOOP DBREF 8T6T A 2 1368 UNP Q99ZW2 CAS9_STRP1 2 1368 DBREF 8T6T B 4 98 PDB 8T6T 8T6T 4 98 DBREF 8T6T C 10 33 PDB 8T6T 8T6T 10 33 DBREF 8T6T D 25 46 PDB 8T6T 8T6T 25 46 SEQADV 8T6T GLY A 1 UNP Q99ZW2 EXPRESSION TAG SEQADV 8T6T ARG A 61 UNP Q99ZW2 ALA 61 ENGINEERED MUTATION SEQADV 8T6T ARG A 1111 UNP Q99ZW2 LEU 1111 ENGINEERED MUTATION SEQADV 8T6T LEU A 1135 UNP Q99ZW2 ASP 1135 ENGINEERED MUTATION SEQADV 8T6T TRP A 1136 UNP Q99ZW2 SER 1136 ENGINEERED MUTATION SEQADV 8T6T LYS A 1218 UNP Q99ZW2 GLY 1218 ENGINEERED MUTATION SEQADV 8T6T GLN A 1219 UNP Q99ZW2 GLU 1219 ENGINEERED MUTATION SEQADV 8T6T ARG A 1317 UNP Q99ZW2 ASN 1317 ENGINEERED MUTATION SEQADV 8T6T ARG A 1322 UNP Q99ZW2 ALA 1322 ENGINEERED MUTATION SEQADV 8T6T PRO A 1333 UNP Q99ZW2 ARG 1333 ENGINEERED MUTATION SEQADV 8T6T GLN A 1335 UNP Q99ZW2 ARG 1335 ENGINEERED MUTATION SEQADV 8T6T ARG A 1337 UNP Q99ZW2 THR 1337 ENGINEERED MUTATION SEQRES 1 A 1368 GLY ASP LYS LYS TYR SER ILE GLY LEU ASP ILE GLY THR SEQRES 2 A 1368 ASN SER VAL GLY TRP ALA VAL ILE THR ASP GLU TYR LYS SEQRES 3 A 1368 VAL PRO SER LYS LYS PHE LYS VAL LEU GLY ASN THR ASP SEQRES 4 A 1368 ARG HIS SER ILE LYS LYS ASN LEU ILE GLY ALA LEU LEU SEQRES 5 A 1368 PHE ASP SER GLY GLU THR ALA GLU ARG THR ARG LEU LYS SEQRES 6 A 1368 ARG THR ALA ARG ARG ARG TYR THR ARG ARG LYS ASN ARG SEQRES 7 A 1368 ILE CYS TYR LEU GLN GLU ILE PHE SER ASN GLU MET ALA SEQRES 8 A 1368 LYS VAL ASP ASP SER PHE PHE HIS ARG LEU GLU GLU SER SEQRES 9 A 1368 PHE LEU VAL GLU GLU ASP LYS LYS HIS GLU ARG HIS PRO SEQRES 10 A 1368 ILE PHE GLY ASN ILE VAL ASP GLU VAL ALA TYR HIS GLU SEQRES 11 A 1368 LYS TYR PRO THR ILE TYR HIS LEU ARG LYS LYS LEU VAL SEQRES 12 A 1368 ASP SER THR ASP LYS ALA ASP LEU ARG LEU ILE TYR LEU SEQRES 13 A 1368 ALA LEU ALA HIS MET ILE LYS PHE ARG GLY HIS PHE LEU SEQRES 14 A 1368 ILE GLU GLY ASP LEU ASN PRO ASP ASN SER ASP VAL ASP SEQRES 15 A 1368 LYS LEU PHE ILE GLN LEU VAL GLN THR TYR ASN GLN LEU SEQRES 16 A 1368 PHE GLU GLU ASN PRO ILE ASN ALA SER GLY VAL ASP ALA SEQRES 17 A 1368 LYS ALA ILE LEU SER ALA ARG LEU SER LYS SER ARG ARG SEQRES 18 A 1368 LEU GLU ASN LEU ILE ALA GLN LEU PRO GLY GLU LYS LYS SEQRES 19 A 1368 ASN GLY LEU PHE GLY ASN LEU ILE ALA LEU SER LEU GLY SEQRES 20 A 1368 LEU THR PRO ASN PHE LYS SER ASN PHE ASP LEU ALA GLU SEQRES 21 A 1368 ASP ALA LYS LEU GLN LEU SER LYS ASP THR TYR ASP ASP SEQRES 22 A 1368 ASP LEU ASP ASN LEU LEU ALA GLN ILE GLY ASP GLN TYR SEQRES 23 A 1368 ALA ASP LEU PHE LEU ALA ALA LYS ASN LEU SER ASP ALA SEQRES 24 A 1368 ILE LEU LEU SER ASP ILE LEU ARG VAL ASN THR GLU ILE SEQRES 25 A 1368 THR LYS ALA PRO LEU SER ALA SER MET ILE LYS ARG TYR SEQRES 26 A 1368 ASP GLU HIS HIS GLN ASP LEU THR LEU LEU LYS ALA LEU SEQRES 27 A 1368 VAL ARG GLN GLN LEU PRO GLU LYS TYR LYS GLU ILE PHE SEQRES 28 A 1368 PHE ASP GLN SER LYS ASN GLY TYR ALA GLY TYR ILE ASP SEQRES 29 A 1368 GLY GLY ALA SER GLN GLU GLU PHE TYR LYS PHE ILE LYS SEQRES 30 A 1368 PRO ILE LEU GLU LYS MET ASP GLY THR GLU GLU LEU LEU SEQRES 31 A 1368 VAL LYS LEU ASN ARG GLU ASP LEU LEU ARG LYS GLN ARG SEQRES 32 A 1368 THR PHE ASP ASN GLY SER ILE PRO HIS GLN ILE HIS LEU SEQRES 33 A 1368 GLY GLU LEU HIS ALA ILE LEU ARG ARG GLN GLU ASP PHE SEQRES 34 A 1368 TYR PRO PHE LEU LYS ASP ASN ARG GLU LYS ILE GLU LYS SEQRES 35 A 1368 ILE LEU THR PHE ARG ILE PRO TYR TYR VAL GLY PRO LEU SEQRES 36 A 1368 ALA ARG GLY ASN SER ARG PHE ALA TRP MET THR ARG LYS SEQRES 37 A 1368 SER GLU GLU THR ILE THR PRO TRP ASN PHE GLU GLU VAL SEQRES 38 A 1368 VAL ASP LYS GLY ALA SER ALA GLN SER PHE ILE GLU ARG SEQRES 39 A 1368 MET THR ASN PHE ASP LYS ASN LEU PRO ASN GLU LYS VAL SEQRES 40 A 1368 LEU PRO LYS HIS SER LEU LEU TYR GLU TYR PHE THR VAL SEQRES 41 A 1368 TYR ASN GLU LEU THR LYS VAL LYS TYR VAL THR GLU GLY SEQRES 42 A 1368 MET ARG LYS PRO ALA PHE LEU SER GLY GLU GLN LYS LYS SEQRES 43 A 1368 ALA ILE VAL ASP LEU LEU PHE LYS THR ASN ARG LYS VAL SEQRES 44 A 1368 THR VAL LYS GLN LEU LYS GLU ASP TYR PHE LYS LYS ILE SEQRES 45 A 1368 GLU CYS PHE ASP SER VAL GLU ILE SER GLY VAL GLU ASP SEQRES 46 A 1368 ARG PHE ASN ALA SER LEU GLY THR TYR HIS ASP LEU LEU SEQRES 47 A 1368 LYS ILE ILE LYS ASP LYS ASP PHE LEU ASP ASN GLU GLU SEQRES 48 A 1368 ASN GLU ASP ILE LEU GLU ASP ILE VAL LEU THR LEU THR SEQRES 49 A 1368 LEU PHE GLU ASP ARG GLU MET ILE GLU GLU ARG LEU LYS SEQRES 50 A 1368 THR TYR ALA HIS LEU PHE ASP ASP LYS VAL MET LYS GLN SEQRES 51 A 1368 LEU LYS ARG ARG ARG TYR THR GLY TRP GLY ARG LEU SER SEQRES 52 A 1368 ARG LYS LEU ILE ASN GLY ILE ARG ASP LYS GLN SER GLY SEQRES 53 A 1368 LYS THR ILE LEU ASP PHE LEU LYS SER ASP GLY PHE ALA SEQRES 54 A 1368 ASN ARG ASN PHE MET GLN LEU ILE HIS ASP ASP SER LEU SEQRES 55 A 1368 THR PHE LYS GLU ASP ILE GLN LYS ALA GLN VAL SER GLY SEQRES 56 A 1368 GLN GLY ASP SER LEU HIS GLU HIS ILE ALA ASN LEU ALA SEQRES 57 A 1368 GLY SER PRO ALA ILE LYS LYS GLY ILE LEU GLN THR VAL SEQRES 58 A 1368 LYS VAL VAL ASP GLU LEU VAL LYS VAL MET GLY ARG HIS SEQRES 59 A 1368 LYS PRO GLU ASN ILE VAL ILE GLU MET ALA ARG GLU ASN SEQRES 60 A 1368 GLN THR THR GLN LYS GLY GLN LYS ASN SER ARG GLU ARG SEQRES 61 A 1368 MET LYS ARG ILE GLU GLU GLY ILE LYS GLU LEU GLY SER SEQRES 62 A 1368 GLN ILE LEU LYS GLU HIS PRO VAL GLU ASN THR GLN LEU SEQRES 63 A 1368 GLN ASN GLU LYS LEU TYR LEU TYR TYR LEU GLN ASN GLY SEQRES 64 A 1368 ARG ASP MET TYR VAL ASP GLN GLU LEU ASP ILE ASN ARG SEQRES 65 A 1368 LEU SER ASP TYR ASP VAL ASP HIS ILE VAL PRO GLN SER SEQRES 66 A 1368 PHE LEU LYS ASP ASP SER ILE ASP ASN LYS VAL LEU THR SEQRES 67 A 1368 ARG SER ASP LYS ASN ARG GLY LYS SER ASP ASN VAL PRO SEQRES 68 A 1368 SER GLU GLU VAL VAL LYS LYS MET LYS ASN TYR TRP ARG SEQRES 69 A 1368 GLN LEU LEU ASN ALA LYS LEU ILE THR GLN ARG LYS PHE SEQRES 70 A 1368 ASP ASN LEU THR LYS ALA GLU ARG GLY GLY LEU SER GLU SEQRES 71 A 1368 LEU ASP LYS ALA GLY PHE ILE LYS ARG GLN LEU VAL GLU SEQRES 72 A 1368 THR ARG GLN ILE THR LYS HIS VAL ALA GLN ILE LEU ASP SEQRES 73 A 1368 SER ARG MET ASN THR LYS TYR ASP GLU ASN ASP LYS LEU SEQRES 74 A 1368 ILE ARG GLU VAL LYS VAL ILE THR LEU LYS SER LYS LEU SEQRES 75 A 1368 VAL SER ASP PHE ARG LYS ASP PHE GLN PHE TYR LYS VAL SEQRES 76 A 1368 ARG GLU ILE ASN ASN TYR HIS HIS ALA HIS ASP ALA TYR SEQRES 77 A 1368 LEU ASN ALA VAL VAL GLY THR ALA LEU ILE LYS LYS TYR SEQRES 78 A 1368 PRO LYS LEU GLU SER GLU PHE VAL TYR GLY ASP TYR LYS SEQRES 79 A 1368 VAL TYR ASP VAL ARG LYS MET ILE ALA LYS SER GLU GLN SEQRES 80 A 1368 GLU ILE GLY LYS ALA THR ALA LYS TYR PHE PHE TYR SER SEQRES 81 A 1368 ASN ILE MET ASN PHE PHE LYS THR GLU ILE THR LEU ALA SEQRES 82 A 1368 ASN GLY GLU ILE ARG LYS ARG PRO LEU ILE GLU THR ASN SEQRES 83 A 1368 GLY GLU THR GLY GLU ILE VAL TRP ASP LYS GLY ARG ASP SEQRES 84 A 1368 PHE ALA THR VAL ARG LYS VAL LEU SER MET PRO GLN VAL SEQRES 85 A 1368 ASN ILE VAL LYS LYS THR GLU VAL GLN THR GLY GLY PHE SEQRES 86 A 1368 SER LYS GLU SER ILE ARG PRO LYS ARG ASN SER ASP LYS SEQRES 87 A 1368 LEU ILE ALA ARG LYS LYS ASP TRP ASP PRO LYS LYS TYR SEQRES 88 A 1368 GLY GLY PHE LEU TRP PRO THR VAL ALA TYR SER VAL LEU SEQRES 89 A 1368 VAL VAL ALA LYS VAL GLU LYS GLY LYS SER LYS LYS LEU SEQRES 90 A 1368 LYS SER VAL LYS GLU LEU LEU GLY ILE THR ILE MET GLU SEQRES 91 A 1368 ARG SER SER PHE GLU LYS ASN PRO ILE ASP PHE LEU GLU SEQRES 92 A 1368 ALA LYS GLY TYR LYS GLU VAL LYS LYS ASP LEU ILE ILE SEQRES 93 A 1368 LYS LEU PRO LYS TYR SER LEU PHE GLU LEU GLU ASN GLY SEQRES 94 A 1368 ARG LYS ARG MET LEU ALA SER ALA LYS GLN LEU GLN LYS SEQRES 95 A 1368 GLY ASN GLU LEU ALA LEU PRO SER LYS TYR VAL ASN PHE SEQRES 96 A 1368 LEU TYR LEU ALA SER HIS TYR GLU LYS LEU LYS GLY SER SEQRES 97 A 1368 PRO GLU ASP ASN GLU GLN LYS GLN LEU PHE VAL GLU GLN SEQRES 98 A 1368 HIS LYS HIS TYR LEU ASP GLU ILE ILE GLU GLN ILE SER SEQRES 99 A 1368 GLU PHE SER LYS ARG VAL ILE LEU ALA ASP ALA ASN LEU SEQRES 100 A 1368 ASP LYS VAL LEU SER ALA TYR ASN LYS HIS ARG ASP LYS SEQRES 101 A 1368 PRO ILE ARG GLU GLN ALA GLU ASN ILE ILE HIS LEU PHE SEQRES 102 A 1368 THR LEU THR ARG LEU GLY ALA PRO ARG ALA PHE LYS TYR SEQRES 103 A 1368 PHE ASP THR THR ILE ASP PRO LYS GLN TYR ARG SER THR SEQRES 104 A 1368 LYS GLU VAL LEU ASP ALA THR LEU ILE HIS GLN SER ILE SEQRES 105 A 1368 THR GLY LEU TYR GLU THR ARG ILE ASP LEU SER GLN LEU SEQRES 106 A 1368 GLY GLY ASP SEQRES 1 B 95 G C A U A A A G A U G A G SEQRES 2 B 95 A C G C G U U U U A G A G SEQRES 3 B 95 C U A G A A A U A G C A A SEQRES 4 B 95 G U U A A A A U A A G G C SEQRES 5 B 95 U A G U C C G U U A U C A SEQRES 6 B 95 A C U U G A A A A A G U G SEQRES 7 B 95 G C A C C G A G U C G G U SEQRES 8 B 95 G C U U SEQRES 1 C 24 DT DT DG DT DA DC DT DG DT DA DG DC DG SEQRES 2 C 24 DT DC DT DC DA DT DC DT DT DT DA SEQRES 1 D 22 DA DA DG DA DT DG DA DG DA DC DG DC DT SEQRES 2 D 22 DA DC DA DG DT DA DC DA DA HELIX 1 AA1 ALA A 59 ALA A 91 1 33 HELIX 2 AA2 SER A 96 SER A 104 1 9 HELIX 3 AA3 ASN A 121 TYR A 132 1 12 HELIX 4 AA4 THR A 134 SER A 145 1 12 HELIX 5 AA5 ASP A 150 PHE A 164 1 15 HELIX 6 AA6 PRO A 176 ASP A 180 5 5 HELIX 7 AA7 LEU A 184 GLN A 194 1 11 HELIX 8 AA8 ALA A 208 SER A 213 1 6 HELIX 9 AA9 SER A 217 LEU A 229 1 13 HELIX 10 AB1 LEU A 241 LEU A 246 1 6 HELIX 11 AB2 LEU A 289 LEU A 306 1 18 HELIX 12 AB3 ALA A 315 GLN A 342 1 28 HELIX 13 AB4 LYS A 346 PHE A 352 1 7 HELIX 14 AB5 GLY A 358 ASP A 364 1 7 HELIX 15 AB6 SER A 368 MET A 383 1 16 HELIX 16 AB7 THR A 386 ARG A 395 1 10 HELIX 17 AB8 ASP A 406 ILE A 410 5 5 HELIX 18 AB9 PRO A 411 GLU A 427 1 17 HELIX 19 AC1 TYR A 430 ASN A 436 1 7 HELIX 20 AC2 ASN A 436 PHE A 446 1 11 HELIX 21 AC3 ASP A 483 ARG A 494 1 12 HELIX 22 AC4 SER A 512 LYS A 526 1 15 HELIX 23 AC5 SER A 541 LEU A 552 1 12 HELIX 24 AC6 LYS A 562 ASP A 567 1 6 HELIX 25 AC7 ASP A 567 ILE A 572 1 6 HELIX 26 AC8 LEU A 591 ILE A 601 1 11 HELIX 27 AC9 ASP A 603 ASN A 609 1 7 HELIX 28 AD1 ASN A 612 PHE A 626 1 15 HELIX 29 AD2 ASP A 628 LEU A 636 1 9 HELIX 30 AD3 LYS A 637 ALA A 640 5 4 HELIX 31 AD4 ASP A 644 ARG A 654 1 11 HELIX 32 AD5 SER A 663 GLY A 669 1 7 HELIX 33 AD6 THR A 678 SER A 685 1 8 HELIX 34 AD7 ASN A 692 ASP A 699 1 8 HELIX 35 AD8 PHE A 704 GLN A 712 1 9 HELIX 36 AD9 SER A 719 ILE A 724 1 6 HELIX 37 AE1 PRO A 731 MET A 751 1 21 HELIX 38 AE2 ARG A 919 ASN A 940 1 22 HELIX 39 AE3 LYS A 959 PHE A 970 1 12 HELIX 40 AE4 ASN A 980 TYR A 1001 1 22 HELIX 41 AE5 LEU A 1004 VAL A 1009 1 6 HELIX 42 AE6 ALA A 1032 ILE A 1042 1 11 HELIX 43 AE7 MET A 1043 LYS A 1047 5 5 HELIX 44 AE8 GLY A 1077 SER A 1088 1 12 HELIX 45 AE9 ASP A 1127 GLY A 1132 1 6 HELIX 46 AF1 MET A 1169 ASN A 1177 1 9 HELIX 47 AF2 ASN A 1177 LYS A 1185 1 9 HELIX 48 AF3 LYS A 1191 ILE A 1195 5 5 HELIX 49 AF4 GLU A 1207 GLY A 1209 5 3 HELIX 50 AF5 PRO A 1229 HIS A 1241 1 13 HELIX 51 AF6 SER A 1248 HIS A 1262 1 15 HELIX 52 AF7 HIS A 1264 VAL A 1280 1 17 HELIX 53 AF8 ALA A 1283 HIS A 1297 1 15 HELIX 54 AF9 PRO A 1301 PHE A 1313 1 13 HELIX 55 AG1 LYS A 1340 ASP A 1344 5 5 HELIX 56 AG2 SER A 1363 LEU A 1365 5 3 SHEET 1 AA1 6 LYS A 954 LEU A 958 0 SHEET 2 AA1 6 ASN A 758 GLU A 762 1 N ILE A 759 O ILE A 956 SHEET 3 AA1 6 TYR A 5 ILE A 11 1 N LEU A 9 O VAL A 760 SHEET 4 AA1 6 SER A 15 THR A 22 -1 O GLY A 17 N ASP A 10 SHEET 5 AA1 6 ILE A 48 LEU A 52 -1 O GLY A 49 N TRP A 18 SHEET 6 AA1 6 ASN A1093 LYS A1096 1 O VAL A1095 N LEU A 52 SHEET 1 AA2 7 SER A 42 ASN A 46 0 SHEET 2 AA2 7 SER A 29 LEU A 35 -1 N PHE A 32 O ILE A 43 SHEET 3 AA2 7 GLU A1357 ASP A1361 1 O GLU A1357 N LEU A 35 SHEET 4 AA2 7 THR A1346 ILE A1348 -1 N LEU A1347 O ILE A1360 SHEET 5 AA2 7 SER A1202 GLU A1205 -1 N LEU A1203 O ILE A1348 SHEET 6 AA2 7 LYS A1211 SER A1216 -1 O LEU A1214 N SER A1202 SHEET 7 AA2 7 GLN A1219 LYS A1222 -1 O GLN A1219 N SER A1216 SHEET 1 AA3 2 PHE A 252 LYS A 253 0 SHEET 2 AA3 2 LYS A 263 LEU A 264 -1 O LEU A 264 N PHE A 252 SHEET 1 AA4 2 LYS A 528 TYR A 529 0 SHEET 2 AA4 2 ALA A 538 PHE A 539 -1 O ALA A 538 N TYR A 529 SHEET 1 AA5 2 GLU A1049 THR A1051 0 SHEET 2 AA5 2 ILE A1057 LYS A1059 -1 O ARG A1058 N ILE A1050 SHEET 1 AA6 2 ILE A1063 THR A1065 0 SHEET 2 AA6 2 ILE A1072 ASP A1075 -1 O TRP A1074 N GLU A1064 SHEET 1 AA7 2 ILE A1120 ALA A1121 0 SHEET 2 AA7 2 GLY A1133 PHE A1134 -1 O PHE A1134 N ILE A1120 SHEET 1 AA8 3 LYS A1156 THR A1167 0 SHEET 2 AA8 3 VAL A1139 LYS A1151 -1 N ALA A1147 O VAL A1160 SHEET 3 AA8 3 ILE A1196 LEU A1198 -1 O LEU A1198 N SER A1142 SHEET 1 AA9 2 PHE A1324 LYS A1325 0 SHEET 2 AA9 2 THR A1330 ILE A1331 -1 O ILE A1331 N PHE A1324 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000