HEADER TRANSPORT PROTEIN 23-JUN-23 8T8R TITLE SORTILIN-PGRN PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: SORTILIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 100 KDA NT RECEPTOR,GLYCOPROTEIN 95,GP95,NEUROTENSIN COMPND 5 RECEPTOR 3,NT3,NTR3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PARAGRANULIN PEPTIDE; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SORT1; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606 KEYWDS SORTILIN, PROGRANULIN, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.B.SRIVASTAVA,A.SRIVASTAVA,G.M.CHERF,L.Y.LOW,G.KANNAN REVDAT 1 26-JUN-24 8T8R 0 JRNL AUTH D.B.SRIVASTAVA,G.M.CHERF,L.Y.LOW,G.KANNAN JRNL TITL STRUCTURAL STUDIES OF SORTILIN-PGRN PEPTIDE COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 24962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.259 REMARK 3 R VALUE (WORKING SET) : 0.258 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.700 REMARK 3 FREE R VALUE TEST SET COUNT : 682 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.87 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1791 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.4530 REMARK 3 BIN FREE R VALUE SET COUNT : 46 REMARK 3 BIN FREE R VALUE : 0.4100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5210 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 106 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 119.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.95000 REMARK 3 B22 (A**2) : 5.60000 REMARK 3 B33 (A**2) : 0.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.778 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.375 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.405 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.899 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.931 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5200 ; 0.006 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 4543 ; 0.001 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7100 ; 1.292 ; 1.663 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10424 ; 0.481 ; 1.574 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 656 ; 7.094 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 17 ; 2.001 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 644 ;14.100 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 814 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6119 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1175 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2642 ; 1.657 ;12.967 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2642 ; 1.657 ;12.967 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3292 ; 3.020 ;23.426 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3293 ; 3.019 ;23.425 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2558 ; 1.348 ;13.102 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2559 ; 1.348 ;13.104 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3809 ; 2.508 ;24.199 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 19923 ; 6.642 ;55.100 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 19924 ; 6.642 ;55.100 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8T8R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275408. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-19 REMARK 200 TEMPERATURE (KELVIN) : 100.000 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99993 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25644 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.870 REMARK 200 RESOLUTION RANGE LOW (A) : 89.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.03400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.87 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NONE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.00 %W/ PEG 3350, 0.20 M SODIUM REMARK 280 CITRATE, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 80.97250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.30900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 80.97250 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.30900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 46 REMARK 465 PRO A 47 REMARK 465 GLY A 48 REMARK 465 GLU A 49 REMARK 465 ASP A 50 REMARK 465 GLU A 51 REMARK 465 GLU A 52 REMARK 465 ARG A 76 REMARK 465 GLY A 77 REMARK 465 VAL A 99 REMARK 465 PRO A 100 REMARK 465 LEU A 101 REMARK 465 VAL A 102 REMARK 465 ILE A 103 REMARK 465 MET A 104 REMARK 465 THR A 105 REMARK 465 PHE A 106 REMARK 465 PHE A 559 REMARK 465 LEU A 560 REMARK 465 LYS A 716 REMARK 465 GLN A 717 REMARK 465 ASN A 718 REMARK 465 SER A 719 REMARK 465 LYS A 720 REMARK 465 SER A 721 REMARK 465 ASN A 722 REMARK 465 SER A 723 REMARK 465 PRO B 1 REMARK 465 ARG B 2 REMARK 465 ARG B 8 REMARK 465 ASP B 9 REMARK 465 PRO B 10 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 55 CG CD NE CZ NH1 NH2 REMARK 480 ARG A 57 CG CD NE CZ NH1 NH2 REMARK 480 ASP A 58 CG OD1 OD2 REMARK 480 ASP A 74 CG OD1 OD2 REMARK 480 LEU A 75 CG CD1 CD2 REMARK 480 LEU A 92 CD1 CD2 REMARK 480 LEU A 94 CD1 CD2 REMARK 480 LYS A 110 CE NZ REMARK 480 LEU A 111 CD1 CD2 REMARK 480 LYS A 122 CD CE NZ REMARK 480 ILE A 124 CD1 REMARK 480 ARG A 134 CZ NH1 NH2 REMARK 480 GLU A 136 CD OE1 OE2 REMARK 480 ARG A 160 CD NE CZ NH1 NH2 REMARK 480 ARG A 163 CZ NH1 NH2 REMARK 480 ILE A 164 CD1 REMARK 480 LYS A 172 CE NZ REMARK 480 GLN A 176 CD OE1 NE2 REMARK 480 MET A 188 SD CE REMARK 480 GLU A 203 CD OE1 OE2 REMARK 480 LYS A 210 CD CE NZ REMARK 480 LYS A 215 CD CE NZ REMARK 480 GLU A 217 CD OE1 OE2 REMARK 480 LYS A 221 CG CD CE NZ REMARK 480 LYS A 227 NZ REMARK 480 SER A 230 OG REMARK 480 ILE A 234 CD1 REMARK 480 ASN A 241 CG OD1 ND2 REMARK 480 LYS A 245 CG CD CE NZ REMARK 480 LYS A 261 CD CE NZ REMARK 480 LYS A 264 CE NZ REMARK 480 LYS A 269 CE NZ REMARK 480 ASP A 287 CG OD1 OD2 REMARK 480 LYS A 288 CD CE NZ REMARK 480 ILE A 294 CD1 REMARK 480 ILE A 320 CD1 REMARK 480 MET A 330 CE REMARK 480 ASP A 337 CG OD1 OD2 REMARK 480 LYS A 355 NZ REMARK 480 ILE A 382 CD1 REMARK 480 ILE A 396 CD1 REMARK 480 ARG A 403 NE CZ NH1 NH2 REMARK 480 ARG A 408 CZ NH1 NH2 REMARK 480 LYS A 409 NZ REMARK 480 GLU A 411 CD OE1 OE2 REMARK 480 ASN A 412 CG OD1 ND2 REMARK 480 LYS A 420 CE NZ REMARK 480 LYS A 422 CD CE NZ REMARK 480 LYS A 438 CE NZ REMARK 480 GLU A 487 CD OE1 OE2 REMARK 480 ILE A 500 CD1 REMARK 480 ILE A 501 CD1 REMARK 480 ARG A 509 NE CZ NH1 NH2 REMARK 480 ILE A 514 CD1 REMARK 480 ARG A 531 CD NE CZ NH1 NH2 REMARK 480 LYS A 572 CE NZ REMARK 480 ILE A 574 CD1 REMARK 480 LEU A 575 CD1 CD2 REMARK 480 GLU A 576 CD OE1 OE2 REMARK 480 GLU A 580 CD OE1 OE2 REMARK 480 GLU A 581 CG CD OE1 OE2 REMARK 480 LYS A 582 CE NZ REMARK 480 ILE A 586 CD1 REMARK 480 ILE A 632 CD1 REMARK 480 LEU A 637 CG CD1 CD2 REMARK 480 LEU A 641 CG CD1 CD2 REMARK 480 ASN A 651 CG OD1 ND2 REMARK 480 ASP A 652 CG OD1 OD2 REMARK 480 LYS A 654 NZ REMARK 480 GLU A 657 CD OE1 OE2 REMARK 480 GLN A 658 CD OE1 NE2 REMARK 480 GLU A 660 CG CD OE1 OE2 REMARK 480 LEU A 661 CD1 CD2 REMARK 480 LYS A 662 CG CD CE NZ REMARK 480 PHE A 668 CG CD1 CD2 CE1 CE2 CZ REMARK 480 CYS A 669 SG REMARK 480 ARG A 673 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 675 CG CD OE1 OE2 REMARK 480 LEU A 677 CG CD1 CD2 REMARK 480 LYS A 684 CD CE NZ REMARK 480 LYS A 689 CE NZ REMARK 480 GLN A 691 CD OE1 NE2 REMARK 480 VAL A 697 CG1 CG2 REMARK 480 ARG A 698 CG CD NE CZ NH1 NH2 REMARK 480 GLU A 699 CD OE1 OE2 REMARK 480 LYS A 701 CG CD CE NZ REMARK 480 LEU A 703 CG CD1 CD2 REMARK 480 LYS A 704 CE NZ REMARK 480 LYS A 705 CE NZ REMARK 480 LYS A 706 CG CD CE NZ REMARK 480 GLU A 715 CG CD OE1 OE2 REMARK 480 ASP B 4 CG OD1 OD2 REMARK 480 LEU B 7 CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 72 -93.83 -125.78 REMARK 500 ASN A 130 56.03 33.04 REMARK 500 GLU A 144 -143.58 58.11 REMARK 500 ASN A 145 51.95 -107.67 REMARK 500 ASP A 169 38.39 -151.08 REMARK 500 ALA A 240 -82.03 -124.18 REMARK 500 SER A 243 -164.81 -109.86 REMARK 500 LEU A 248 107.83 -57.96 REMARK 500 ASP A 299 43.14 -153.66 REMARK 500 GLN A 308 54.60 -91.68 REMARK 500 ASP A 389 -34.33 -38.84 REMARK 500 ASN A 390 28.43 88.02 REMARK 500 ASP A 399 47.85 -143.06 REMARK 500 SER A 413 139.29 -170.66 REMARK 500 CYS A 425 -158.77 -163.73 REMARK 500 ALA A 431 -143.91 -116.99 REMARK 500 ASP A 477 25.12 -142.66 REMARK 500 ASP A 623 59.52 -108.27 REMARK 500 ASP A 652 81.02 61.38 REMARK 500 LEU A 670 -75.51 -83.38 REMARK 500 LYS A 689 50.03 -119.71 REMARK 500 REMARK 500 REMARK: NULL DBREF 8T8R A 46 723 UNP Q99523 SORT_HUMAN 79 756 DBREF 8T8R B 1 16 UNP P28799 GRN_HUMAN 578 593 SEQADV 8T8R PRO B 14 UNP P28799 GLN 591 CONFLICT SEQADV 8T8R ILE B 15 UNP P28799 LEU 592 CONFLICT SEQRES 1 A 678 ALA PRO GLY GLU ASP GLU GLU CYS GLY ARG VAL ARG ASP SEQRES 2 A 678 PHE VAL ALA LYS LEU ALA ASN ASN THR HIS GLN HIS VAL SEQRES 3 A 678 PHE ASP ASP LEU ARG GLY SER VAL SER LEU SER TRP VAL SEQRES 4 A 678 GLY ASP SER THR GLY VAL ILE LEU VAL LEU THR THR PHE SEQRES 5 A 678 HIS VAL PRO LEU VAL ILE MET THR PHE GLY GLN SER LYS SEQRES 6 A 678 LEU TYR ARG SER GLU ASP TYR GLY LYS ASN PHE LYS ASP SEQRES 7 A 678 ILE THR ASP LEU ILE ASN ASN THR PHE ILE ARG THR GLU SEQRES 8 A 678 PHE GLY MET ALA ILE GLY PRO GLU ASN SER GLY LYS VAL SEQRES 9 A 678 VAL LEU THR ALA GLU VAL SER GLY GLY SER ARG GLY GLY SEQRES 10 A 678 ARG ILE PHE ARG SER SER ASP PHE ALA LYS ASN PHE VAL SEQRES 11 A 678 GLN THR ASP LEU PRO PHE HIS PRO LEU THR GLN MET MET SEQRES 12 A 678 TYR SER PRO GLN ASN SER ASP TYR LEU LEU ALA LEU SER SEQRES 13 A 678 THR GLU ASN GLY LEU TRP VAL SER LYS ASN PHE GLY GLY SEQRES 14 A 678 LYS TRP GLU GLU ILE HIS LYS ALA VAL CYS LEU ALA LYS SEQRES 15 A 678 TRP GLY SER ASP ASN THR ILE PHE PHE THR THR TYR ALA SEQRES 16 A 678 ASN GLY SER CYS LYS ALA ASP LEU GLY ALA LEU GLU LEU SEQRES 17 A 678 TRP ARG THR SER ASP LEU GLY LYS SER PHE LYS THR ILE SEQRES 18 A 678 GLY VAL LYS ILE TYR SER PHE GLY LEU GLY GLY ARG PHE SEQRES 19 A 678 LEU PHE ALA SER VAL MET ALA ASP LYS ASP THR THR ARG SEQRES 20 A 678 ARG ILE HIS VAL SER THR ASP GLN GLY ASP THR TRP SER SEQRES 21 A 678 MET ALA GLN LEU PRO SER VAL GLY GLN GLU GLN PHE TYR SEQRES 22 A 678 SER ILE LEU ALA ALA ASN ASP ASP MET VAL PHE MET HIS SEQRES 23 A 678 VAL ASP GLU PRO GLY ASP THR GLY PHE GLY THR ILE PHE SEQRES 24 A 678 THR SER ASP ASP ARG GLY ILE VAL TYR SER LYS SER LEU SEQRES 25 A 678 ASP ARG HIS LEU TYR THR THR THR GLY GLY GLU THR ASP SEQRES 26 A 678 PHE THR ASN VAL THR SER LEU ARG GLY VAL TYR ILE THR SEQRES 27 A 678 SER VAL LEU SER GLU ASP ASN SER ILE GLN THR MET ILE SEQRES 28 A 678 THR PHE ASP GLN GLY GLY ARG TRP THR HIS LEU ARG LYS SEQRES 29 A 678 PRO GLU ASN SER GLU CYS ASP ALA THR ALA LYS ASN LYS SEQRES 30 A 678 ASN GLU CYS SER LEU HIS ILE HIS ALA SER TYR SER ILE SEQRES 31 A 678 SER GLN LYS LEU ASN VAL PRO MET ALA PRO LEU SER GLU SEQRES 32 A 678 PRO ASN ALA VAL GLY ILE VAL ILE ALA HIS GLY SER VAL SEQRES 33 A 678 GLY ASP ALA ILE SER VAL MET VAL PRO ASP VAL TYR ILE SEQRES 34 A 678 SER ASP ASP GLY GLY TYR SER TRP THR LYS MET LEU GLU SEQRES 35 A 678 GLY PRO HIS TYR TYR THR ILE LEU ASP SER GLY GLY ILE SEQRES 36 A 678 ILE VAL ALA ILE GLU HIS SER SER ARG PRO ILE ASN VAL SEQRES 37 A 678 ILE LYS PHE SER THR ASP GLU GLY GLN CYS TRP GLN THR SEQRES 38 A 678 TYR THR PHE THR ARG ASP PRO ILE TYR PHE THR GLY LEU SEQRES 39 A 678 ALA SER GLU PRO GLY ALA ARG SER MET ASN ILE SER ILE SEQRES 40 A 678 TRP GLY PHE THR GLU SER PHE LEU THR SER GLN TRP VAL SEQRES 41 A 678 SER TYR THR ILE ASP PHE LYS ASP ILE LEU GLU ARG ASN SEQRES 42 A 678 CYS GLU GLU LYS ASP TYR THR ILE TRP LEU ALA HIS SER SEQRES 43 A 678 THR ASP PRO GLU ASP TYR GLU ASP GLY CYS ILE LEU GLY SEQRES 44 A 678 TYR LYS GLU GLN PHE LEU ARG LEU ARG LYS SER SER VAL SEQRES 45 A 678 CYS GLN ASN GLY ARG ASP TYR VAL VAL THR LYS GLN PRO SEQRES 46 A 678 SER ILE CYS LEU CYS SER LEU GLU ASP PHE LEU CYS ASP SEQRES 47 A 678 PHE GLY TYR TYR ARG PRO GLU ASN ASP SER LYS CYS VAL SEQRES 48 A 678 GLU GLN PRO GLU LEU LYS GLY HIS ASP LEU GLU PHE CYS SEQRES 49 A 678 LEU TYR GLY ARG GLU GLU HIS LEU THR THR ASN GLY TYR SEQRES 50 A 678 ARG LYS ILE PRO GLY ASP LYS CYS GLN GLY GLY VAL ASN SEQRES 51 A 678 PRO VAL ARG GLU VAL LYS ASP LEU LYS LYS LYS CYS THR SEQRES 52 A 678 SER ASN PHE LEU SER PRO GLU LYS GLN ASN SER LYS SER SEQRES 53 A 678 ASN SER SEQRES 1 B 16 PRO ARG TRP ASP ALA PRO LEU ARG ASP PRO ALA LEU ARG SEQRES 2 B 16 PRO ILE LEU HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET NAG A 801 14 HET NAG A 802 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) HELIX 1 AA1 PHE A 59 ASN A 65 1 7 HELIX 2 AA2 THR A 125 ASN A 129 5 5 HELIX 3 AA3 SER A 230 ASN A 232 5 3 HELIX 4 AA4 ALA A 431 GLN A 437 1 7 HELIX 5 AA5 SER A 636 GLU A 638 5 3 HELIX 6 AA6 GLY A 663 TYR A 671 1 9 HELIX 7 AA7 ARG A 673 LEU A 677 1 5 HELIX 8 AA8 LEU A 703 ASN A 710 1 8 SHEET 1 AA1 3 THR A 67 HIS A 68 0 SHEET 2 AA1 3 GLN A 563 ASP A 570 -1 O THR A 568 N HIS A 68 SHEET 3 AA1 3 VAL A 71 ASP A 74 -1 N ASP A 73 O TRP A 564 SHEET 1 AA2 4 THR A 67 HIS A 68 0 SHEET 2 AA2 4 GLN A 563 ASP A 570 -1 O THR A 568 N HIS A 68 SHEET 3 AA2 4 ASN A 549 PHE A 555 -1 N ILE A 552 O TYR A 567 SHEET 4 AA2 4 TYR A 535 ALA A 540 -1 N TYR A 535 O PHE A 555 SHEET 1 AA3 4 LEU A 81 VAL A 84 0 SHEET 2 AA3 4 VAL A 90 PHE A 97 -1 O VAL A 90 N VAL A 84 SHEET 3 AA3 4 GLN A 108 SER A 114 -1 O GLN A 108 N PHE A 97 SHEET 4 AA3 4 LYS A 122 ASP A 123 -1 O LYS A 122 N ARG A 113 SHEET 1 AA4 4 ALA A 140 ILE A 141 0 SHEET 2 AA4 4 VAL A 149 ALA A 153 -1 O VAL A 150 N ALA A 140 SHEET 3 AA4 4 ARG A 163 SER A 167 -1 O PHE A 165 N LEU A 151 SHEET 4 AA4 4 VAL A 175 ASP A 178 -1 O THR A 177 N ILE A 164 SHEET 1 AA5 4 MET A 188 TYR A 189 0 SHEET 2 AA5 4 LEU A 197 LEU A 200 -1 O LEU A 198 N MET A 188 SHEET 3 AA5 4 LEU A 206 SER A 209 -1 O TRP A 207 N ALA A 199 SHEET 4 AA5 4 GLU A 217 HIS A 220 -1 O GLU A 217 N VAL A 208 SHEET 1 AA6 7 LEU A 225 TRP A 228 0 SHEET 2 AA6 7 ILE A 234 THR A 238 -1 O THR A 237 N LEU A 225 SHEET 3 AA6 7 LEU A 251 THR A 256 -1 O TRP A 254 N PHE A 236 SHEET 4 AA6 7 LYS A 264 GLY A 276 -1 O ILE A 270 N LEU A 251 SHEET 5 AA6 7 PHE A 279 MET A 285 -1 O PHE A 281 N GLY A 274 SHEET 6 AA6 7 ARG A 292 SER A 297 -1 O SER A 297 N LEU A 280 SHEET 7 AA6 7 SER A 305 MET A 306 -1 O SER A 305 N VAL A 296 SHEET 1 AA7 4 TYR A 318 ALA A 323 0 SHEET 2 AA7 4 VAL A 328 ASP A 333 -1 O HIS A 331 N SER A 319 SHEET 3 AA7 4 PHE A 340 SER A 346 -1 O PHE A 344 N MET A 330 SHEET 4 AA7 4 TYR A 353 LEU A 361 -1 O HIS A 360 N GLY A 341 SHEET 1 AA8 8 THR A 372 ASN A 373 0 SHEET 2 AA8 8 TYR A 381 LEU A 386 -1 O ILE A 382 N THR A 372 SHEET 3 AA8 8 ILE A 392 THR A 397 -1 O GLN A 393 N VAL A 385 SHEET 4 AA8 8 THR A 405 ARG A 408 -1 O THR A 405 N ILE A 396 SHEET 5 AA8 8 SER A 426 HIS A 430 -1 O LEU A 427 N LEU A 407 SHEET 6 AA8 8 VAL A 455 GLY A 462 -1 O GLY A 462 N SER A 426 SHEET 7 AA8 8 ASP A 471 SER A 475 -1 O TYR A 473 N ALA A 457 SHEET 8 AA8 8 THR A 483 LEU A 486 -1 O THR A 483 N ILE A 474 SHEET 1 AA9 4 HIS A 490 LEU A 495 0 SHEET 2 AA9 4 ILE A 500 GLU A 505 -1 O ILE A 504 N TYR A 491 SHEET 3 AA9 4 VAL A 513 SER A 517 -1 O LYS A 515 N ALA A 503 SHEET 4 AA9 4 GLN A 525 THR A 528 -1 O TYR A 527 N ILE A 514 SHEET 1 AB1 3 TYR A 584 LEU A 588 0 SHEET 2 AB1 3 TYR A 605 LEU A 612 -1 O PHE A 609 N TRP A 587 SHEET 3 AB1 3 LYS A 628 ILE A 632 -1 O SER A 631 N LYS A 606 SHEET 1 AB2 2 PHE A 640 LEU A 641 0 SHEET 2 AB2 2 ARG A 683 LYS A 684 -1 O ARG A 683 N LEU A 641 SHEET 1 AB3 2 TYR A 646 TYR A 647 0 SHEET 2 AB3 2 VAL A 656 GLU A 657 -1 O VAL A 656 N TYR A 647 SHEET 1 AB4 2 THR A 678 THR A 679 0 SHEET 2 AB4 2 LYS A 701 ASP A 702 -1 O LYS A 701 N THR A 679 SSBOND 1 CYS A 53 CYS A 523 1555 1555 2.03 SSBOND 2 CYS A 224 CYS A 244 1555 1555 2.04 SSBOND 3 CYS A 415 CYS A 425 1555 1555 2.03 SSBOND 4 CYS A 579 CYS A 618 1555 1555 2.03 SSBOND 5 CYS A 601 CYS A 633 1555 1555 2.03 SSBOND 6 CYS A 635 CYS A 690 1555 1555 2.04 SSBOND 7 CYS A 642 CYS A 655 1555 1555 2.03 SSBOND 8 CYS A 669 CYS A 707 1555 1555 2.04 LINK ND2 ASN A 65 C1 NAG A 801 1555 1555 1.47 LINK ND2 ASN A 129 C1 NAG A 802 1555 1555 1.48 LINK ND2 ASN A 373 C1 NAG D 1 1555 1555 1.44 LINK ND2 ASN A 549 C1 NAG C 1 1555 1555 1.45 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.40 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.40 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.40 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.40 CRYST1 161.945 78.618 111.200 90.00 126.80 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006175 0.000000 0.004620 0.00000 SCALE2 0.000000 0.012720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011231 0.00000