HEADER VIRAL PROTEIN 23-JUN-23 8T8Y TITLE CRYSTAL STRUCTURE OF TERRESTRIVIRUS INOSITOL PYROPHOSPHATE KINASE IN TITLE 2 COMPLEX WITH ADP AND 1,4,5-INSP3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TERRESTRIVIRUS SP.; SOURCE 3 ORGANISM_TAXID: 2487775; SOURCE 4 GENE: TERRESTRIVIRUS9_15; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRUS, KINASE, INOSITOL PHOSPHATE, SOIL, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.ZONG,H.WANG,S.B.SHEARS REVDAT 4 14-FEB-24 8T8Y 1 JRNL REVDAT 3 07-FEB-24 8T8Y 1 TITLE REVDAT 2 24-JAN-24 8T8Y 1 JRNL REVDAT 1 15-NOV-23 8T8Y 0 JRNL AUTH G.ZONG,Y.DESFOUGERES,P.PORTELA-TORRES,Y.U.KWON,A.SAIARDI, JRNL AUTH 2 S.B.SHEARS,H.WANG JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF AN INOSITOL JRNL TITL 2 PYROPHOSPHATE KINASE FROM A GIANT VIRUS. JRNL REF EMBO J. V. 43 462 2024 JRNL REFN ESSN 1460-2075 JRNL PMID 38216735 JRNL DOI 10.1038/S44318-023-00005-0 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 3 NUMBER OF REFLECTIONS : 11245 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 606 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 749 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.333 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.238 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.159 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.416 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1859 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1690 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2517 ; 1.442 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3939 ; 1.218 ; 1.596 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 216 ; 7.419 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 98 ;32.763 ;23.367 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 340 ;17.274 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;23.946 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 252 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2007 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 379 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 867 ; 2.301 ; 3.716 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 866 ; 2.259 ; 3.707 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1082 ; 3.894 ; 5.555 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1083 ; 3.894 ; 5.568 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 992 ; 2.463 ; 4.021 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 988 ; 2.466 ; 4.025 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1430 ; 4.179 ; 5.898 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7530 ; 7.125 ;68.806 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7531 ; 7.124 ;68.804 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8T8Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12033 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.14200 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.83800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.81 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG8000, 100MM HEPES PH 7.0, 10MM REMARK 280 NAH2PO4, 10% ETHYLENE GLYCOL, 5MM ADP AND 10MM MGCL2, THEN REMARK 280 SOAKED IN 25% PEG8000, 100MM HEPES PH 7.0, 20% ETHYLENE GLYCOL REMARK 280 WITH 5MM MYO-1,4,5-IP3, 5MM ADP AND 10MM MGCL2, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.51100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.51100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 32.30950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.30500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 32.30950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.30500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 52.51100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 32.30950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.30500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 52.51100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 32.30950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.30500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 17 REMARK 465 ILE A 18 REMARK 465 THR A 19 REMARK 465 ASN A 20 REMARK 465 MET A 21 REMARK 465 SER A 22 REMARK 465 ASN A 23 REMARK 465 ILE A 24 REMARK 465 ASP A 25 REMARK 465 LEU A 26 REMARK 465 GLN A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 LYS A 30 REMARK 465 SER A 31 REMARK 465 VAL A 32 REMARK 465 ALA A 33 REMARK 465 ASP A 34 REMARK 465 GLU A 35 REMARK 465 VAL A 36 REMARK 465 ILE A 37 REMARK 465 ALA A 38 REMARK 465 ASP A 39 REMARK 465 ILE A 40 REMARK 465 ALA A 41 REMARK 465 GLU A 42 REMARK 465 ILE A 43 REMARK 465 VAL A 44 REMARK 465 ASN A 45 REMARK 465 LYS A 46 REMARK 465 GLU A 47 REMARK 465 LEU A 264 REMARK 465 ASN A 265 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 56 -179.19 -172.75 REMARK 500 ARG A 58 -11.84 -152.74 REMARK 500 LYS A 76 -54.88 78.65 REMARK 500 TYR A 91 51.80 -153.63 REMARK 500 ASN A 107 -108.22 52.69 REMARK 500 ARG A 134 -34.09 -130.68 REMARK 500 ASN A 180 80.49 -44.05 REMARK 500 PHE A 209 41.05 -76.84 REMARK 500 ASP A 231 82.28 70.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 231 OD2 REMARK 620 2 ADP A 401 O1B 86.3 REMARK 620 3 ADP A 401 O1A 98.4 80.3 REMARK 620 4 I3P A 404 O41 97.0 85.0 157.9 REMARK 620 5 HOH A 521 O 171.2 97.6 90.1 75.5 REMARK 620 6 HOH A 530 O 89.5 169.3 110.1 85.8 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 I3P A 404 O12 REMARK 620 2 HOH A 517 O 78.9 REMARK 620 3 HOH A 534 O 89.6 94.1 REMARK 620 4 HOH A 591 O 90.2 168.4 89.6 REMARK 620 5 HOH A 599 O 93.6 75.3 168.1 101.8 REMARK 620 6 HOH A 614 O 152.1 81.6 71.9 110.0 100.6 REMARK 620 N 1 2 3 4 5 DBREF1 8T8Y A 17 265 UNP A0A3G4ZNY6_9VIRU DBREF2 8T8Y A A0A3G4ZNY6 17 265 SEQRES 1 A 249 ASP ILE THR ASN MET SER ASN ILE ASP LEU GLN SER SER SEQRES 2 A 249 LYS SER VAL ALA ASP GLU VAL ILE ALA ASP ILE ALA GLU SEQRES 3 A 249 ILE VAL ASN LYS GLU SER ILE ARG ILE PHE PRO ARG ILE SEQRES 4 A 249 ALA GLY ARG SER TYR ILE ILE TYR GLY GLN THR SER GLY SEQRES 5 A 249 ILE ILE CYS LYS ARG MET GLU LYS SER ASP ASN GLU PHE SEQRES 6 A 249 VAL ILE TYR ASN TYR ILE SER GLU HIS TYR ASP LYS PHE SEQRES 7 A 249 LEU LYS LYS TYR VAL PRO LYS LEU TYR GLY LYS ASN ASN SEQRES 8 A 249 ASP MET LEU LEU LEU GLU ASP LEU THR TYR ASN TYR ASN SEQRES 9 A 249 ASN PRO ASN VAL MET ASP VAL LYS ILE GLY ALA ARG LYS SEQRES 10 A 249 ARG LYS SER HIS THR SER GLY PHE PHE SER ILE ARG GLY SEQRES 11 A 249 TYR THR ASN SER HIS ASP TYR LYS PHE ASP PRO ASP GLU SEQRES 12 A 249 TYR LEU THR SER GLU SER THR ILE ASN HIS ILE LYS ASN SEQRES 13 A 249 PHE MET GLU ALA GLY GLY GLU ASN ARG ASP LYS THR LYS SEQRES 14 A 249 GLN VAL LEU LEU LYS TRP ILE MET LYS LEU SER GLU LEU SEQRES 15 A 249 ALA ASN ASP LEU PHE GLU ILE ASN LEU LYS PHE ASP GLY SEQRES 16 A 249 VAL SER LEU ILE PHE ILE TYR ASP ASP ASP CYS SER LYS SEQRES 17 A 249 CYS ASP VAL ASN VAL VAL ASP PHE SER ARG VAL LYS LEU SEQRES 18 A 249 ILE ASP THR ASN ASP GLN MET THR ILE SER ALA VAL THR SEQRES 19 A 249 ASN LEU ILE LYS ILE LEU SER GLU LEU ALA ASP ASN PRO SEQRES 20 A 249 LEU ASN HET ADP A 401 27 HET MG A 402 1 HET MG A 403 1 HET I3P A 404 24 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM I3P D-MYO-INOSITOL-1,4,5-TRIPHOSPHATE FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG 2(MG 2+) FORMUL 5 I3P C6 H15 O15 P3 FORMUL 6 HOH *117(H2 O) HELIX 1 AA1 ASP A 78 TYR A 91 1 14 HELIX 2 AA2 TYR A 91 VAL A 99 1 9 HELIX 3 AA3 ASN A 149 LYS A 154 5 6 HELIX 4 AA4 THR A 162 GLU A 175 1 14 HELIX 5 AA5 ALA A 176 GLY A 178 5 3 HELIX 6 AA6 ASN A 180 PHE A 203 1 24 HELIX 7 AA7 ASP A 242 ASN A 262 1 21 SHEET 1 AA1 4 ILE A 61 TYR A 63 0 SHEET 2 AA1 4 ILE A 69 ARG A 73 -1 O CYS A 71 N ILE A 62 SHEET 3 AA1 4 MET A 109 GLU A 113 -1 O LEU A 112 N ILE A 70 SHEET 4 AA1 4 LEU A 102 ASN A 106 -1 N GLY A 104 O LEU A 111 SHEET 1 AA2 4 SER A 143 TYR A 147 0 SHEET 2 AA2 4 PRO A 122 LYS A 128 -1 N LYS A 128 O SER A 143 SHEET 3 AA2 4 SER A 213 ASP A 219 -1 O LEU A 214 N VAL A 127 SHEET 4 AA2 4 CYS A 225 VAL A 230 -1 O ASP A 226 N ILE A 217 SHEET 1 AA3 2 LEU A 207 LYS A 208 0 SHEET 2 AA3 2 LYS A 236 LEU A 237 -1 O LYS A 236 N LYS A 208 LINK OD2 ASP A 231 MG MG A 402 1555 1555 2.12 LINK O1B ADP A 401 MG MG A 402 1555 1555 2.27 LINK O1A ADP A 401 MG MG A 402 1555 1555 2.14 LINK MG MG A 402 O41 I3P A 404 1555 1555 2.09 LINK MG MG A 402 O HOH A 521 1555 1555 2.21 LINK MG MG A 402 O HOH A 530 1555 1555 2.02 LINK MG MG A 403 O12 I3P A 404 1555 1555 2.24 LINK MG MG A 403 O HOH A 517 1555 1555 2.02 LINK MG MG A 403 O HOH A 534 1555 1555 2.48 LINK MG MG A 403 O HOH A 591 1555 1555 2.12 LINK MG MG A 403 O HOH A 599 1555 1555 2.23 LINK MG MG A 403 O HOH A 614 1555 8545 2.00 CRYST1 64.619 100.610 105.022 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015475 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009939 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009522 0.00000