HEADER VIRAL PROTEIN 23-JUN-23 8T92 TITLE CRYSTAL STRUCTURE OF TERRESTRIVIRUS INOSITOL PYROPHOSPHATASE KINASE IN TITLE 2 COMPLEX WITH ADP AND SCYLLO-D-(1,2,3,4)-IP4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: KINASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TERRESTRIVIRUS SP.; SOURCE 3 ORGANISM_TAXID: 2487775; SOURCE 4 GENE: TERRESTRIVIRUS9_15; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS VIRUS, KINASE, INOSITOL PHOSPHATE, SOIL, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.ZONG,H.WANG,S.B.SHEARS REVDAT 3 14-FEB-24 8T92 1 JRNL REVDAT 2 24-JAN-24 8T92 1 JRNL REVDAT 1 15-NOV-23 8T92 0 JRNL AUTH G.ZONG,Y.DESFOUGERES,P.PORTELA-TORRES,Y.U.KWON,A.SAIARDI, JRNL AUTH 2 S.B.SHEARS,H.WANG JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF AN INOSITOL JRNL TITL 2 PYROPHOSPHATE KINASE FROM A GIANT VIRUS. JRNL REF EMBO J. V. 43 462 2024 JRNL REFN ESSN 1460-2075 JRNL PMID 38216735 JRNL DOI 10.1038/S44318-023-00005-0 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0253 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 91.9 REMARK 3 NUMBER OF REFLECTIONS : 13443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 728 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 590 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 55.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2040 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1764 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 98 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.03000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.237 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.209 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.991 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.908 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1876 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1696 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2542 ; 1.851 ; 1.663 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3954 ; 1.339 ; 1.595 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 217 ; 7.620 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;31.397 ;23.434 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 342 ;17.911 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;27.507 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 254 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2018 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 380 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 871 ; 3.023 ; 2.937 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 870 ; 2.958 ; 2.930 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1087 ; 4.753 ; 4.381 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1088 ; 4.763 ; 4.393 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1005 ; 4.601 ; 3.510 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 997 ; 4.291 ; 3.482 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1444 ; 6.772 ; 5.004 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2062 ; 8.979 ;33.490 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2044 ; 8.584 ;33.296 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 8T92 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-23. REMARK 100 THE DEPOSITION ID IS D_1000275261. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-21 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15183 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 19.80 REMARK 200 R MERGE (I) : 0.13800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 15.60 REMARK 200 R MERGE FOR SHELL (I) : 0.90300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG8000, 100MM HEPES PH 7.0, 10MM REMARK 280 NAH2PO4, 10% ETHYLENE GLYCOL, 5MM ADP AND 10MM MGCL2, THEN REMARK 280 SOAKED IN 25% PEG8000, 100MM HEPES PH 7.0, 20% ETHYLENE GLYCOL REMARK 280 WITH 5MM D-SCYLLO- (1,2,3,4)IP4, 5MM ADP AND 10MM MGCL2, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.93100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.93100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.26600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.06400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.26600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.06400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.93100 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.26600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.06400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.93100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.26600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.06400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 17 REMARK 465 ILE A 18 REMARK 465 THR A 19 REMARK 465 ASN A 20 REMARK 465 MET A 21 REMARK 465 SER A 22 REMARK 465 ASN A 23 REMARK 465 ILE A 24 REMARK 465 ASP A 25 REMARK 465 LEU A 26 REMARK 465 GLN A 27 REMARK 465 SER A 28 REMARK 465 SER A 29 REMARK 465 LYS A 30 REMARK 465 SER A 31 REMARK 465 VAL A 32 REMARK 465 ALA A 33 REMARK 465 ASP A 34 REMARK 465 GLU A 35 REMARK 465 VAL A 36 REMARK 465 ILE A 37 REMARK 465 ALA A 38 REMARK 465 ASP A 39 REMARK 465 ILE A 40 REMARK 465 ALA A 41 REMARK 465 GLU A 42 REMARK 465 ILE A 43 REMARK 465 VAL A 44 REMARK 465 ASN A 45 REMARK 465 LYS A 46 REMARK 465 GLU A 47 REMARK 465 LEU A 264 REMARK 465 ASN A 265 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 54 157.91 -47.92 REMARK 500 ASN A 107 -107.77 58.88 REMARK 500 ARG A 134 -47.71 -133.05 REMARK 500 PHE A 209 49.97 -88.07 REMARK 500 ASP A 231 81.38 84.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 231 OD2 REMARK 620 2 ADP A 401 O1B 93.3 REMARK 620 3 ADP A 401 O1A 100.7 88.3 REMARK 620 4 HOH A 502 O 176.7 89.8 78.4 REMARK 620 5 HOH A 507 O 92.9 87.7 166.1 88.2 REMARK 620 6 HOH A 534 O 86.7 175.5 96.1 90.2 87.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 231 OD1 REMARK 620 2 ASP A 231 OD2 55.6 REMARK 620 3 SER A 233 OG 79.5 131.2 REMARK 620 4 ADP A 401 O3B 82.3 71.7 124.0 REMARK 620 5 HOH A 506 O 136.3 80.7 140.5 84.0 REMARK 620 6 HOH A 512 O 102.7 140.8 60.2 73.3 112.6 REMARK 620 7 HOH A 535 O 90.2 90.7 69.7 162.2 90.5 124.3 REMARK 620 N 1 2 3 4 5 6 DBREF1 8T92 A 17 265 UNP A0A3G4ZNY6_9VIRU DBREF2 8T92 A A0A3G4ZNY6 17 265 SEQRES 1 A 249 ASP ILE THR ASN MET SER ASN ILE ASP LEU GLN SER SER SEQRES 2 A 249 LYS SER VAL ALA ASP GLU VAL ILE ALA ASP ILE ALA GLU SEQRES 3 A 249 ILE VAL ASN LYS GLU SER ILE ARG ILE PHE PRO ARG ILE SEQRES 4 A 249 ALA GLY ARG SER TYR ILE ILE TYR GLY GLN THR SER GLY SEQRES 5 A 249 ILE ILE CYS LYS ARG MET GLU LYS SER ASP ASN GLU PHE SEQRES 6 A 249 VAL ILE TYR ASN TYR ILE SER GLU HIS TYR ASP LYS PHE SEQRES 7 A 249 LEU LYS LYS TYR VAL PRO LYS LEU TYR GLY LYS ASN ASN SEQRES 8 A 249 ASP MET LEU LEU LEU GLU ASP LEU THR TYR ASN TYR ASN SEQRES 9 A 249 ASN PRO ASN VAL MET ASP VAL LYS ILE GLY ALA ARG LYS SEQRES 10 A 249 ARG LYS SER HIS THR SER GLY PHE PHE SER ILE ARG GLY SEQRES 11 A 249 TYR THR ASN SER HIS ASP TYR LYS PHE ASP PRO ASP GLU SEQRES 12 A 249 TYR LEU THR SER GLU SER THR ILE ASN HIS ILE LYS ASN SEQRES 13 A 249 PHE MET GLU ALA GLY GLY GLU ASN ARG ASP LYS THR LYS SEQRES 14 A 249 GLN VAL LEU LEU LYS TRP ILE MET LYS LEU SER GLU LEU SEQRES 15 A 249 ALA ASN ASP LEU PHE GLU ILE ASN LEU LYS PHE ASP GLY SEQRES 16 A 249 VAL SER LEU ILE PHE ILE TYR ASP ASP ASP CYS SER LYS SEQRES 17 A 249 CYS ASP VAL ASN VAL VAL ASP PHE SER ARG VAL LYS LEU SEQRES 18 A 249 ILE ASP THR ASN ASP GLN MET THR ILE SER ALA VAL THR SEQRES 19 A 249 ASN LEU ILE LYS ILE LEU SER GLU LEU ALA ASP ASN PRO SEQRES 20 A 249 LEU ASN HET ADP A 401 27 HET MG A 402 1 HET MG A 403 1 HET XID A 404 28 HET PO4 A 405 5 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM XID (1S,2R,3R,4S,5R,6R)-5,6-DIHYDROXYCYCLOHEXANE-1,2,3,4- HETNAM 2 XID TETRAYL TETRAKIS[DIHYDROGEN (PHOSPHATE)] HETNAM PO4 PHOSPHATE ION FORMUL 2 ADP C10 H15 N5 O10 P2 FORMUL 3 MG 2(MG 2+) FORMUL 5 XID C6 H16 O18 P4 FORMUL 6 PO4 O4 P 3- FORMUL 7 HOH *98(H2 O) HELIX 1 AA1 ASP A 78 TYR A 91 1 14 HELIX 2 AA2 TYR A 91 VAL A 99 1 9 HELIX 3 AA3 ASN A 149 LYS A 154 5 6 HELIX 4 AA4 THR A 162 GLU A 175 1 14 HELIX 5 AA5 ALA A 176 GLY A 178 5 3 HELIX 6 AA6 ASN A 180 PHE A 203 1 24 HELIX 7 AA7 ASP A 242 ASN A 262 1 21 SHEET 1 AA1 4 ILE A 61 TYR A 63 0 SHEET 2 AA1 4 ILE A 69 ARG A 73 -1 O CYS A 71 N ILE A 62 SHEET 3 AA1 4 MET A 109 GLU A 113 -1 O LEU A 110 N LYS A 72 SHEET 4 AA1 4 LEU A 102 ASN A 106 -1 N TYR A 103 O LEU A 111 SHEET 1 AA2 4 SER A 143 TYR A 147 0 SHEET 2 AA2 4 PRO A 122 LYS A 128 -1 N LYS A 128 O SER A 143 SHEET 3 AA2 4 SER A 213 ASP A 219 -1 O LEU A 214 N VAL A 127 SHEET 4 AA2 4 CYS A 225 VAL A 230 -1 O VAL A 230 N SER A 213 SHEET 1 AA3 2 LEU A 207 LYS A 208 0 SHEET 2 AA3 2 LYS A 236 LEU A 237 -1 O LYS A 236 N LYS A 208 LINK OD2 ASP A 231 MG MG A 402 1555 1555 1.95 LINK OD1 ASP A 231 MG MG A 403 1555 1555 2.17 LINK OD2 ASP A 231 MG MG A 403 1555 1555 2.54 LINK OG SER A 233 MG MG A 403 1555 1555 2.85 LINK O1B ADP A 401 MG MG A 402 1555 1555 2.04 LINK O1A ADP A 401 MG MG A 402 1555 1555 2.06 LINK O3B ADP A 401 MG MG A 403 1555 1555 2.28 LINK MG MG A 402 O HOH A 502 1555 1555 2.31 LINK MG MG A 402 O HOH A 507 1555 1555 2.07 LINK MG MG A 402 O HOH A 534 1555 1555 2.01 LINK MG MG A 403 O HOH A 506 1555 1555 2.10 LINK MG MG A 403 O HOH A 512 1555 1555 1.81 LINK MG MG A 403 O HOH A 535 1555 1555 2.06 CRYST1 62.532 104.128 103.862 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015992 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009604 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009628 0.00000 TER 1765 PRO A 263 HETATM 1766 PB ADP A 401 -19.473 -18.976 -1.416 1.00 27.61 P HETATM 1767 O1B ADP A 401 -19.738 -20.271 -2.111 1.00 23.92 O HETATM 1768 O2B ADP A 401 -19.518 -19.075 0.084 1.00 24.68 O HETATM 1769 O3B ADP A 401 -18.211 -18.285 -1.937 1.00 23.54 O HETATM 1770 PA ADP A 401 -21.497 -17.712 -3.114 1.00 22.41 P HETATM 1771 O1A ADP A 401 -21.341 -18.888 -4.029 1.00 21.16 O HETATM 1772 O2A ADP A 401 -21.055 -16.363 -3.554 1.00 26.32 O HETATM 1773 O3A ADP A 401 -20.729 -17.980 -1.743 1.00 22.94 O HETATM 1774 O5' ADP A 401 -23.016 -17.655 -2.616 1.00 24.17 O HETATM 1775 C5' ADP A 401 -23.527 -18.733 -1.784 1.00 21.78 C HETATM 1776 C4' ADP A 401 -25.029 -18.687 -1.795 1.00 21.77 C HETATM 1777 O4' ADP A 401 -25.474 -17.346 -1.444 1.00 21.23 O HETATM 1778 C3' ADP A 401 -25.696 -18.993 -3.136 1.00 22.80 C HETATM 1779 O3' ADP A 401 -25.985 -20.383 -3.250 1.00 23.35 O HETATM 1780 C2' ADP A 401 -26.983 -18.169 -3.042 1.00 21.60 C HETATM 1781 O2' ADP A 401 -28.011 -18.850 -2.352 1.00 19.76 O HETATM 1782 C1' ADP A 401 -26.552 -16.939 -2.249 1.00 20.59 C HETATM 1783 N9 ADP A 401 -26.120 -15.765 -3.017 1.00 20.90 N HETATM 1784 C8 ADP A 401 -24.843 -15.354 -3.335 1.00 23.08 C HETATM 1785 N7 ADP A 401 -24.778 -14.188 -3.943 1.00 23.15 N HETATM 1786 C5 ADP A 401 -26.103 -13.779 -3.987 1.00 22.34 C HETATM 1787 C6 ADP A 401 -26.715 -12.615 -4.485 1.00 20.95 C HETATM 1788 N6 ADP A 401 -26.046 -11.588 -5.008 1.00 18.89 N HETATM 1789 N1 ADP A 401 -28.054 -12.502 -4.311 1.00 20.32 N HETATM 1790 C2 ADP A 401 -28.712 -13.507 -3.730 1.00 21.37 C HETATM 1791 N3 ADP A 401 -28.253 -14.671 -3.282 1.00 20.61 N HETATM 1792 C4 ADP A 401 -26.925 -14.732 -3.408 1.00 21.15 C HETATM 1793 MG MG A 402 -19.975 -20.430 -4.130 1.00 21.34 MG HETATM 1794 MG MG A 403 -16.332 -18.902 -3.064 1.00 27.62 MG HETATM 1795 C1 XID A 404 -15.907 -26.351 0.767 1.00 49.08 C HETATM 1796 C2 XID A 404 -15.988 -24.818 0.718 1.00 47.68 C HETATM 1797 C3 XID A 404 -14.986 -24.330 -0.332 1.00 47.41 C HETATM 1798 P3 XID A 404 -13.650 -21.907 -0.372 1.00 68.34 P HETATM 1799 C4 XID A 404 -15.444 -24.810 -1.668 1.00 41.34 C HETATM 1800 P4 XID A 404 -15.129 -23.313 -3.931 1.00 37.22 P HETATM 1801 C5 XID A 404 -15.401 -26.297 -1.751 1.00 37.72 C HETATM 1802 P5 XID A 404 -15.313 -27.490 -4.087 1.00 34.93 P HETATM 1803 C6 XID A 404 -16.254 -26.919 -0.642 1.00 43.13 C HETATM 1804 P6 XID A 404 -17.178 -29.420 -0.793 1.00 56.16 P HETATM 1805 O11 XID A 404 -16.834 -26.905 1.745 1.00 52.36 O HETATM 1806 O12 XID A 404 -15.675 -24.286 1.966 1.00 49.97 O HETATM 1807 O13 XID A 404 -14.955 -22.917 -0.410 1.00 56.48 O HETATM 1808 O14 XID A 404 -14.595 -24.206 -2.664 1.00 38.30 O HETATM 1809 O15 XID A 404 -15.949 -26.599 -2.957 1.00 34.65 O HETATM 1810 O16 XID A 404 -15.998 -28.322 -0.577 1.00 50.06 O HETATM 1811 O23 XID A 404 -13.256 -21.342 -1.713 1.00 51.29 O HETATM 1812 O24 XID A 404 -16.468 -22.833 -3.509 1.00 37.41 O HETATM 1813 O25 XID A 404 -14.123 -26.600 -4.683 1.00 39.07 O HETATM 1814 O26 XID A 404 -18.443 -28.708 -0.997 1.00 47.18 O HETATM 1815 O33 XID A 404 -14.680 -21.145 0.685 1.00 51.65 O HETATM 1816 O34 XID A 404 -14.034 -22.192 -4.140 1.00 38.35 O HETATM 1817 O35 XID A 404 -16.472 -27.752 -4.966 1.00 32.53 O HETATM 1818 O36 XID A 404 -17.145 -30.321 0.527 1.00 69.79 O HETATM 1819 O43 XID A 404 -12.391 -22.375 0.497 1.00 69.32 O HETATM 1820 O44 XID A 404 -15.102 -24.265 -5.202 1.00 27.84 O HETATM 1821 O45 XID A 404 -14.722 -28.825 -3.345 1.00 38.71 O HETATM 1822 O46 XID A 404 -16.526 -30.151 -2.092 1.00 51.50 O HETATM 1823 P PO4 A 405 -20.531 -24.732 -2.501 1.00116.84 P HETATM 1824 O1 PO4 A 405 -20.870 -23.507 -3.388 1.00 77.56 O HETATM 1825 O2 PO4 A 405 -21.720 -25.061 -1.599 1.00 91.21 O HETATM 1826 O3 PO4 A 405 -19.306 -24.413 -1.614 1.00111.35 O HETATM 1827 O4 PO4 A 405 -20.232 -25.955 -3.384 1.00 92.57 O HETATM 1828 O HOH A 501 -25.433 -32.222 -9.798 1.00 31.98 O HETATM 1829 O HOH A 502 -21.951 -21.583 -3.800 1.00 21.63 O HETATM 1830 O HOH A 503 -32.028 -10.644 -11.460 1.00 20.94 O HETATM 1831 O HOH A 504 -19.057 -27.953 -3.198 1.00 56.31 O HETATM 1832 O HOH A 505 -29.506 -13.303 -23.887 1.00 34.12 O HETATM 1833 O HOH A 506 -16.783 -20.816 -2.322 1.00 26.19 O HETATM 1834 O HOH A 507 -18.977 -22.237 -4.020 1.00 28.98 O HETATM 1835 O HOH A 508 -45.379 -15.792 -5.946 1.00 45.63 O HETATM 1836 O HOH A 509 -17.249 -15.416 9.030 1.00 46.23 O HETATM 1837 O HOH A 510 -17.564 -28.514 -16.906 1.00 26.77 O HETATM 1838 O HOH A 511 -12.613 -11.551 6.902 1.00 45.61 O HETATM 1839 O HOH A 512 -15.806 -17.755 -1.761 1.00 32.03 O HETATM 1840 O HOH A 513 -45.710 -11.745 -8.597 1.00 44.30 O HETATM 1841 O HOH A 514 -26.332 -16.616 5.018 1.00 41.71 O HETATM 1842 O HOH A 515 -29.895 -43.164 -12.167 1.00 48.65 O HETATM 1843 O HOH A 516 -38.044 -9.143 -1.309 1.00 41.48 O HETATM 1844 O HOH A 517 -30.350 -4.137 -5.331 1.00 27.31 O HETATM 1845 O HOH A 518 -14.783 -18.640 -7.245 1.00 16.53 O HETATM 1846 O HOH A 519 -16.890 -8.178 9.028 1.00 50.77 O HETATM 1847 O HOH A 520 -29.887 -17.132 -2.719 1.00 25.20 O HETATM 1848 O HOH A 521 -14.058 -18.021 -20.804 1.00 22.19 O HETATM 1849 O HOH A 522 -7.964 -11.321 -19.152 1.00 48.13 O HETATM 1850 O HOH A 523 -37.616 -33.384 -24.459 1.00 46.49 O HETATM 1851 O HOH A 524 -34.742 -10.963 -0.568 1.00 35.78 O HETATM 1852 O HOH A 525 -12.299 -13.495 -1.834 1.00 34.24 O HETATM 1853 O HOH A 526 -41.199 -22.030 -3.020 1.00 44.88 O HETATM 1854 O HOH A 527 -20.435 -12.885 -6.192 1.00 26.87 O HETATM 1855 O HOH A 528 -23.123 -6.326 -12.206 1.00 27.06 O HETATM 1856 O HOH A 529 -25.194 -32.418 -7.230 1.00 34.22 O HETATM 1857 O HOH A 530 -32.096 -7.716 -7.418 1.00 26.66 O HETATM 1858 O HOH A 531 -9.270 -16.911 -1.425 1.00 44.95 O HETATM 1859 O HOH A 532 -30.015 -27.157 -0.703 1.00 28.98 O HETATM 1860 O HOH A 533 -33.436 -13.377 -17.596 1.00 35.04 O HETATM 1861 O HOH A 534 -20.128 -20.721 -6.110 1.00 21.42 O HETATM 1862 O HOH A 535 -15.069 -19.722 -4.466 1.00 25.08 O HETATM 1863 O HOH A 536 -8.405 -5.738 -9.712 1.00 29.76 O HETATM 1864 O HOH A 537 -25.954 -26.739 -25.679 1.00 26.52 O HETATM 1865 O HOH A 538 -12.534 -30.078 -4.504 1.00 32.21 O HETATM 1866 O HOH A 539 -40.919 -30.319 -12.506 1.00 29.47 O HETATM 1867 O HOH A 540 -30.286 -4.466 -10.146 1.00 49.85 O HETATM 1868 O HOH A 541 -28.527 -35.667 -4.244 1.00 31.72 O HETATM 1869 O HOH A 542 -27.686 -40.925 -9.021 1.00 36.11 O HETATM 1870 O HOH A 543 -39.445 -27.210 -5.900 1.00 28.55 O HETATM 1871 O HOH A 544 -27.662 -9.524 -27.324 1.00 44.55 O HETATM 1872 O HOH A 545 -38.356 -33.902 -26.986 1.00 32.99 O HETATM 1873 O HOH A 546 -28.557 -7.747 8.778 1.00 35.54 O HETATM 1874 O HOH A 547 -31.938 -17.318 -0.864 1.00 32.09 O HETATM 1875 O HOH A 548 -23.767 -11.342 -26.821 1.00 35.15 O HETATM 1876 O HOH A 549 -21.878 -13.800 -4.276 1.00 23.06 O HETATM 1877 O HOH A 550 -25.995 -34.489 -5.631 1.00 30.86 O HETATM 1878 O HOH A 551 -9.880 -23.829 -21.352 1.00 40.66 O HETATM 1879 O HOH A 552 -34.649 -20.001 -1.048 1.00 34.16 O HETATM 1880 O HOH A 553 -5.006 -14.669 -11.770 1.00 38.54 O HETATM 1881 O HOH A 554 -16.362 -27.023 -14.932 1.00 40.32 O HETATM 1882 O HOH A 555 -16.518 -26.457 -24.578 1.00 45.72 O HETATM 1883 O HOH A 556 -30.580 -38.124 -5.138 1.00 33.77 O HETATM 1884 O HOH A 557 -37.821 -41.395 -0.889 1.00 37.92 O HETATM 1885 O HOH A 558 -35.248 -36.922 -7.153 1.00 32.61 O HETATM 1886 O HOH A 559 -19.528 -27.221 -25.378 1.00 32.48 O HETATM 1887 O HOH A 560 -38.033 -25.116 -4.925 1.00 39.21 O HETATM 1888 O HOH A 561 -13.910 -0.312 4.121 1.00 43.23 O HETATM 1889 O HOH A 562 -25.690 -15.221 -28.442 1.00 32.80 O HETATM 1890 O HOH A 563 -16.097 -39.126 -10.845 1.00 41.91 O HETATM 1891 O HOH A 564 -21.387 -38.260 -11.981 1.00 40.74 O HETATM 1892 O HOH A 565 -7.967 -22.246 -6.612 1.00 30.73 O HETATM 1893 O HOH A 566 -30.359 -14.702 -10.621 1.00 18.91 O HETATM 1894 O HOH A 567 -25.874 -5.701 7.708 1.00 33.18 O HETATM 1895 O HOH A 568 -40.312 -19.502 -1.922 1.00 45.22 O HETATM 1896 O HOH A 569 -32.589 -12.867 -10.018 1.00 27.53 O HETATM 1897 O HOH A 570 -38.439 -12.522 -16.005 1.00 32.11 O HETATM 1898 O HOH A 571 -14.628 -3.145 -20.088 1.00 45.13 O HETATM 1899 O HOH A 572 -27.094 -1.927 3.162 1.00 19.33 O HETATM 1900 O HOH A 573 -12.652 -24.114 4.726 1.00 40.73 O HETATM 1901 O HOH A 574 -13.056 -23.167 -13.994 1.00 34.51 O HETATM 1902 O HOH A 575 -18.052 -21.895 -0.181 1.00 40.23 O HETATM 1903 O HOH A 576 -22.027 -40.682 -4.312 1.00 40.24 O HETATM 1904 O HOH A 577 -9.840 -10.971 -24.005 1.00 47.95 O HETATM 1905 O HOH A 578 -14.111 -29.933 -11.060 1.00 33.75 O HETATM 1906 O HOH A 579 -12.571 -16.092 0.468 1.00 31.95 O HETATM 1907 O HOH A 580 -29.323 -41.985 -16.491 1.00 36.36 O HETATM 1908 O HOH A 581 -34.410 -9.268 -7.862 1.00 30.67 O HETATM 1909 O HOH A 582 -34.046 -27.631 1.917 1.00 23.64 O HETATM 1910 O HOH A 583 -17.565 -7.707 -21.698 1.00 35.61 O HETATM 1911 O HOH A 584 -28.683 -10.746 -21.328 1.00 45.05 O HETATM 1912 O HOH A 585 -25.502 -2.680 4.665 1.00 18.12 O HETATM 1913 O HOH A 586 -31.671 -29.871 3.734 1.00 56.29 O HETATM 1914 O HOH A 587 -20.721 -4.150 -10.491 1.00 30.08 O HETATM 1915 O HOH A 588 -25.474 -41.434 -16.632 1.00 39.59 O HETATM 1916 O HOH A 589 -37.414 -12.382 -1.287 1.00 38.90 O HETATM 1917 O HOH A 590 -27.994 -4.380 -15.511 1.00 48.88 O HETATM 1918 O HOH A 591 -26.047 -34.757 -20.311 1.00 42.10 O HETATM 1919 O HOH A 592 -10.986 -18.671 -2.010 1.00 36.09 O HETATM 1920 O HOH A 593 -7.883 -8.417 -21.100 1.00 49.76 O HETATM 1921 O HOH A 594 -40.664 -15.922 -18.243 1.00 32.60 O HETATM 1922 O HOH A 595 -26.398 -34.607 -16.989 1.00 43.47 O HETATM 1923 O HOH A 596 -15.634 -20.012 5.924 1.00 44.90 O HETATM 1924 O HOH A 597 -30.579 -12.299 -21.402 1.00 39.70 O HETATM 1925 O HOH A 598 -30.165 -9.839 -28.155 1.00 41.17 O CONECT 1515 1794 CONECT 1516 1793 1794 CONECT 1533 1794 CONECT 1766 1767 1768 1769 1773 CONECT 1767 1766 1793 CONECT 1768 1766 CONECT 1769 1766 1794 CONECT 1770 1771 1772 1773 1774 CONECT 1771 1770 1793 CONECT 1772 1770 CONECT 1773 1766 1770 CONECT 1774 1770 1775 CONECT 1775 1774 1776 CONECT 1776 1775 1777 1778 CONECT 1777 1776 1782 CONECT 1778 1776 1779 1780 CONECT 1779 1778 CONECT 1780 1778 1781 1782 CONECT 1781 1780 CONECT 1782 1777 1780 1783 CONECT 1783 1782 1784 1792 CONECT 1784 1783 1785 CONECT 1785 1784 1786 CONECT 1786 1785 1787 1792 CONECT 1787 1786 1788 1789 CONECT 1788 1787 CONECT 1789 1787 1790 CONECT 1790 1789 1791 CONECT 1791 1790 1792 CONECT 1792 1783 1786 1791 CONECT 1793 1516 1767 1771 1829 CONECT 1793 1834 1861 CONECT 1794 1515 1516 1533 1769 CONECT 1794 1833 1839 1862 CONECT 1795 1796 1803 1805 CONECT 1796 1795 1797 1806 CONECT 1797 1796 1799 1807 CONECT 1798 1807 1811 1815 1819 CONECT 1799 1797 1801 1808 CONECT 1800 1808 1812 1816 1820 CONECT 1801 1799 1803 1809 CONECT 1802 1809 1813 1817 1821 CONECT 1803 1795 1801 1810 CONECT 1804 1810 1814 1818 1822 CONECT 1805 1795 CONECT 1806 1796 CONECT 1807 1797 1798 CONECT 1808 1799 1800 CONECT 1809 1801 1802 CONECT 1810 1803 1804 CONECT 1811 1798 CONECT 1812 1800 CONECT 1813 1802 CONECT 1814 1804 CONECT 1815 1798 CONECT 1816 1800 CONECT 1817 1802 CONECT 1818 1804 CONECT 1819 1798 CONECT 1820 1800 CONECT 1821 1802 CONECT 1822 1804 CONECT 1823 1824 1825 1826 1827 CONECT 1824 1823 CONECT 1825 1823 CONECT 1826 1823 CONECT 1827 1823 CONECT 1829 1793 CONECT 1833 1794 CONECT 1834 1793 CONECT 1839 1794 CONECT 1861 1793 CONECT 1862 1794 MASTER 342 0 5 7 10 0 0 6 1924 1 73 20 END