HEADER OXIDOREDUCTASE/INHIBITOR 26-JUN-23 8TA1
TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE (DHFR) FROM MYCOBACTERIUM
TITLE 2 ULCERANS AGY99 IN COMPLEX WITH NADP AND INHIBITOR MAM907
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: MYULA.01062.A.B13;
COMPND 5 EC: 1.5.1.3;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ULCERANS;
SOURCE 3 ORGANISM_TAXID: 362242;
SOURCE 4 STRAIN: AGY99;
SOURCE 5 GENE: DFRA, MUL_2179;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MYULA.01062.A.B13
KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR
KEYWDS 2 INFECTIOUS DISEASE, DIHYDROFOLATE REDUCTASE, OXIDOREDUCTASE-
KEYWDS 3 OXIDOREDUCTASE INHIBITOR COMPLEX, OXIDOREDUCTASE, OXIDOREDUCTASE-
KEYWDS 4 INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE
AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID)
REVDAT 3 27-NOV-24 8TA1 1 JRNL
REVDAT 2 06-NOV-24 8TA1 1 JRNL
REVDAT 1 28-AUG-24 8TA1 0
JRNL AUTH M.ANDRADE MEIRELLES,V.M.ALMEIDA,J.R.SULLIVAN,I.DE TOLEDO,
JRNL AUTH 2 C.V.DOS REIS,M.R.CUNHA,R.ZIGWEID,A.SHIM,B.SANKARAN,
JRNL AUTH 3 E.L.WOODWARD,S.SEIBOLD,L.LIU,M.R.MIAN,K.P.BATTAILE,J.RILEY,
JRNL AUTH 4 C.DUNCAN,F.R.C.SIMEONS,L.FERGUSON,H.JOJI,K.D.READ,S.LOVELL,
JRNL AUTH 5 B.L.STAKER,M.A.BEHR,R.A.PILLI,R.M.COUNAGO
JRNL TITL RATIONAL EXPLORATION OF 2,4-DIAMINOPYRIMIDINES AS DHFR
JRNL TITL 2 INHIBITORS ACTIVE AGAINST MYCOBACTERIUM ABSCESSUS AND
JRNL TITL 3 MYCOBACTERIUM AVIUM , TWO EMERGING HUMAN PATHOGENS.
JRNL REF J.MED.CHEM. V. 67 19143 2024
JRNL REFN ISSN 0022-2623
JRNL PMID 39468773
JRNL DOI 10.1021/ACS.JMEDCHEM.4C01594
REMARK 2
REMARK 2 RESOLUTION. 1.50 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.21RC1_4933
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.27
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.030
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 26479
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.148
REMARK 3 R VALUE (WORKING SET) : 0.147
REMARK 3 FREE R VALUE : 0.167
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990
REMARK 3 FREE R VALUE TEST SET COUNT : 1320
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 22.2700 - 3.1200 1.00 2855 143 0.1282 0.1401
REMARK 3 2 3.1200 - 2.4800 1.00 2774 182 0.1340 0.1489
REMARK 3 3 2.4700 - 2.1600 1.00 2790 159 0.1280 0.1730
REMARK 3 4 2.1600 - 1.9700 1.00 2785 167 0.1308 0.1536
REMARK 3 5 1.9700 - 1.8200 1.00 2751 164 0.1388 0.1646
REMARK 3 6 1.8200 - 1.7200 1.00 2785 147 0.1643 0.2227
REMARK 3 7 1.7200 - 1.6300 1.00 2853 91 0.1853 0.2110
REMARK 3 8 1.6300 - 1.5600 1.00 2796 136 0.2118 0.2439
REMARK 3 9 1.5600 - 1.5000 1.00 2770 131 0.2399 0.2346
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.370
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.010 1415
REMARK 3 ANGLE : 1.105 1944
REMARK 3 CHIRALITY : 0.073 214
REMARK 3 PLANARITY : 0.013 243
REMARK 3 DIHEDRAL : 17.975 527
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 9
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 26 )
REMARK 3 ORIGIN FOR THE GROUP (A): 4.7501 -6.7257 16.4343
REMARK 3 T TENSOR
REMARK 3 T11: 0.0562 T22: 0.0513
REMARK 3 T33: 0.0819 T12: -0.0004
REMARK 3 T13: -0.0042 T23: -0.0177
REMARK 3 L TENSOR
REMARK 3 L11: 2.0138 L22: 2.4045
REMARK 3 L33: 3.2337 L12: 0.1349
REMARK 3 L13: -0.0713 L23: 0.1131
REMARK 3 S TENSOR
REMARK 3 S11: 0.0090 S12: -0.2264 S13: 0.1748
REMARK 3 S21: 0.0785 S22: -0.0161 S23: -0.0832
REMARK 3 S31: 0.0287 S32: 0.0107 S33: 0.0086
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 37 )
REMARK 3 ORIGIN FOR THE GROUP (A): -7.5688 -5.9127 13.1810
REMARK 3 T TENSOR
REMARK 3 T11: 0.0640 T22: 0.0757
REMARK 3 T33: 0.0920 T12: 0.0016
REMARK 3 T13: -0.0045 T23: -0.0240
REMARK 3 L TENSOR
REMARK 3 L11: 2.1429 L22: 3.1983
REMARK 3 L33: 5.1902 L12: 0.0375
REMARK 3 L13: 0.3632 L23: 3.1917
REMARK 3 S TENSOR
REMARK 3 S11: 0.0160 S12: -0.1569 S13: 0.1976
REMARK 3 S21: -0.0057 S22: -0.2567 S23: 0.2659
REMARK 3 S31: -0.1631 S32: -0.2972 S33: 0.1721
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 62 )
REMARK 3 ORIGIN FOR THE GROUP (A): -3.2415 -18.5718 12.9194
REMARK 3 T TENSOR
REMARK 3 T11: 0.0627 T22: 0.0478
REMARK 3 T33: 0.0621 T12: -0.0033
REMARK 3 T13: 0.0060 T23: -0.0056
REMARK 3 L TENSOR
REMARK 3 L11: 3.1206 L22: 1.5919
REMARK 3 L33: 1.8174 L12: -0.6227
REMARK 3 L13: -0.0832 L23: -0.0355
REMARK 3 S TENSOR
REMARK 3 S11: -0.0502 S12: -0.1211 S13: -0.0638
REMARK 3 S21: 0.0801 S22: 0.0256 S23: 0.0562
REMARK 3 S31: 0.0104 S32: -0.0849 S33: 0.0302
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 78 )
REMARK 3 ORIGIN FOR THE GROUP (A): 1.3093 -26.6615 8.6381
REMARK 3 T TENSOR
REMARK 3 T11: 0.1175 T22: 0.0667
REMARK 3 T33: 0.1310 T12: -0.0108
REMARK 3 T13: 0.0116 T23: -0.0212
REMARK 3 L TENSOR
REMARK 3 L11: 3.7633 L22: 1.3094
REMARK 3 L33: 0.6380 L12: -0.6567
REMARK 3 L13: -0.5046 L23: 0.0580
REMARK 3 S TENSOR
REMARK 3 S11: -0.0660 S12: 0.0459 S13: -0.3911
REMARK 3 S21: -0.1326 S22: 0.0119 S23: -0.0385
REMARK 3 S31: 0.1613 S32: -0.0287 S33: 0.0316
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 102 )
REMARK 3 ORIGIN FOR THE GROUP (A): -0.3394 -19.0440 0.5749
REMARK 3 T TENSOR
REMARK 3 T11: 0.1005 T22: 0.0908
REMARK 3 T33: 0.0975 T12: -0.0093
REMARK 3 T13: -0.0010 T23: -0.0059
REMARK 3 L TENSOR
REMARK 3 L11: 0.3051 L22: 4.1599
REMARK 3 L33: 3.0866 L12: 0.0328
REMARK 3 L13: -0.1462 L23: 1.1042
REMARK 3 S TENSOR
REMARK 3 S11: -0.0461 S12: 0.1185 S13: -0.0436
REMARK 3 S21: -0.4568 S22: 0.0409 S23: 0.0250
REMARK 3 S31: -0.0372 S32: -0.0384 S33: -0.0050
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 122 )
REMARK 3 ORIGIN FOR THE GROUP (A): 5.4730 -6.9222 6.2645
REMARK 3 T TENSOR
REMARK 3 T11: 0.0439 T22: 0.0445
REMARK 3 T33: 0.0584 T12: -0.0146
REMARK 3 T13: -0.0031 T23: 0.0028
REMARK 3 L TENSOR
REMARK 3 L11: 1.7518 L22: 1.7520
REMARK 3 L33: 1.8943 L12: -1.2264
REMARK 3 L13: -0.3763 L23: 0.3570
REMARK 3 S TENSOR
REMARK 3 S11: 0.0835 S12: 0.0801 S13: 0.0244
REMARK 3 S21: -0.1175 S22: -0.1039 S23: -0.0260
REMARK 3 S31: -0.1138 S32: 0.0353 S33: -0.0006
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 132 )
REMARK 3 ORIGIN FOR THE GROUP (A): 13.5559 -6.1200 22.6074
REMARK 3 T TENSOR
REMARK 3 T11: 0.1361 T22: 0.1811
REMARK 3 T33: 0.2161 T12: 0.0335
REMARK 3 T13: -0.0595 T23: -0.0824
REMARK 3 L TENSOR
REMARK 3 L11: 0.9979 L22: 2.4197
REMARK 3 L33: 1.0824 L12: -1.2983
REMARK 3 L13: -1.0416 L23: 1.3271
REMARK 3 S TENSOR
REMARK 3 S11: -0.2893 S12: -0.7236 S13: 0.5860
REMARK 3 S21: 0.4278 S22: 0.2350 S23: -0.5189
REMARK 3 S31: -0.0705 S32: 0.0379 S33: -0.2548
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 145 )
REMARK 3 ORIGIN FOR THE GROUP (A): 8.6703 0.1722 3.4147
REMARK 3 T TENSOR
REMARK 3 T11: 0.1437 T22: 0.1013
REMARK 3 T33: 0.1061 T12: 0.0150
REMARK 3 T13: 0.0515 T23: 0.0527
REMARK 3 L TENSOR
REMARK 3 L11: 0.4090 L22: 0.6631
REMARK 3 L33: 1.8191 L12: -0.0252
REMARK 3 L13: 0.8628 L23: 0.0261
REMARK 3 S TENSOR
REMARK 3 S11: 0.1656 S12: 0.1645 S13: 0.1087
REMARK 3 S21: -0.0591 S22: -0.0565 S23: -0.0638
REMARK 3 S31: -0.3252 S32: 0.2357 S33: 0.1556
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 165 )
REMARK 3 ORIGIN FOR THE GROUP (A): -0.8796 3.7872 12.5144
REMARK 3 T TENSOR
REMARK 3 T11: 0.0986 T22: 0.0577
REMARK 3 T33: 0.1036 T12: 0.0114
REMARK 3 T13: 0.0059 T23: -0.0027
REMARK 3 L TENSOR
REMARK 3 L11: 1.4550 L22: 1.3507
REMARK 3 L33: 7.6741 L12: -0.2760
REMARK 3 L13: -2.1875 L23: 0.9403
REMARK 3 S TENSOR
REMARK 3 S11: 0.1289 S12: 0.0393 S13: 0.1877
REMARK 3 S21: -0.0792 S22: -0.0373 S23: -0.0067
REMARK 3 S31: -0.1480 S32: -0.1783 S33: -0.0448
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8TA1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-JUL-23.
REMARK 100 THE DEPOSITION ID IS D_1000275547.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 21-JUN-23
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 4.6
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : SEALED TUBE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : HELIOS MULTILAYER
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON III
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26509
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500
REMARK 200 RESOLUTION RANGE LOW (A) : 44.110
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 8.700
REMARK 200 R MERGE (I) : 0.10200
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : 5.80
REMARK 200 R MERGE FOR SHELL (I) : 1.24700
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 44.22
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: BERKELEY H8: 30% (W/V) PEG 4000, 100
REMARK 280 MM SODIUM ACETATE / HYDROCHLORIC ACID PH 4.6, 200 MM AMMONIUM
REMARK 280 ACETATE. PLATE 13388 H8 DROP 1. MYULA.01062.A.B13.PS38720 AT 8.9
REMARK 280 MG/ML. 2MM MAM907 AND 2MM NADP ADDED TO THE PROTEIN PRIOR TO
REMARK 280 CRYSTALLIZATION. PLATE 13388 WELL H8 DROP 1, CRYO: 80%
REMARK 280 CRYSTALLANT + 20% PEG 200, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.13250
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -7
REMARK 465 ALA A -6
REMARK 465 HIS A -5
REMARK 465 HIS A -4
REMARK 465 HIS A -3
REMARK 465 HIS A -2
REMARK 465 HIS A -1
REMARK 465 HIS A 0
REMARK 465 MET A 1
REMARK 465 THR A 2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A 23 39.07 -91.26
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 PG4 A 205
REMARK 610 PG4 A 206
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 NA A 201 NA
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 HOH A 373 O
REMARK 620 2 HOH A 461 O 59.2
REMARK 620 3 HOH A 466 O 140.4 100.2
REMARK 620 4 HOH A 495 O 88.2 82.3 53.9
REMARK 620 5 HOH A 507 O 111.3 164.0 79.3 84.6
REMARK 620 N 1 2 3 4
DBREF 8TA1 A 1 165 UNP A0PQG8 A0PQG8_MYCUA 1 165
SEQADV 8TA1 MET A -7 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TA1 ALA A -6 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TA1 HIS A -5 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TA1 HIS A -4 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TA1 HIS A -3 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TA1 HIS A -2 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TA1 HIS A -1 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TA1 HIS A 0 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TA1 SER A 89 UNP A0PQG8 CYS 89 ENGINEERED MUTATION
SEQADV 8TA1 ALA A 96 UNP A0PQG8 GLU 96 ENGINEERED MUTATION
SEQRES 1 A 173 MET ALA HIS HIS HIS HIS HIS HIS MET THR SER VAL GLY
SEQRES 2 A 173 LEU ILE TRP ALA GLN SER THR SER GLY VAL ILE GLY ARG
SEQRES 3 A 173 ASP GLY GLY ILE PRO TRP ARG LEU PRO GLU ASP LEU ALA
SEQRES 4 A 173 HIS PHE LYS ARG LEU THR MET GLY HIS THR VAL VAL MET
SEQRES 5 A 173 GLY ARG ARG THR TRP ASP SER LEU PRO ALA ALA HIS ARG
SEQRES 6 A 173 PRO LEU PRO GLY ARG ARG ASN VAL VAL VAL THR ARG GLN
SEQRES 7 A 173 THR GLY LEU VAL ALA HIS GLY ALA GLN VAL VAL GLY SER
SEQRES 8 A 173 LEU GLU GLN ALA LEU SER PRO ALA GLU PRO ASP ALA ALA
SEQRES 9 A 173 THR TRP VAL ILE GLY GLY ALA GLN ILE TYR ALA LEU ALA
SEQRES 10 A 173 LEU PRO LEU ALA ASN ARG CYS GLU VAL THR GLU VAL ASP
SEQRES 11 A 173 VAL ASP LEU PRO PRO GLU ASP GLU ASP ALA LEU ALA PRO
SEQRES 12 A 173 VAL LEU ASP GLN THR TRP ALA GLY THR SER GLY GLU TRP
SEQRES 13 A 173 LEU VAL SER ARG SER GLY LEU ARG TYR ARG MET HIS SER
SEQRES 14 A 173 TYR ARG ARG LEU
HET NA A 201 1
HET ACT A 202 4
HET EII A 203 30
HET NAP A 204 48
HET PG4 A 205 10
HET PG4 A 206 7
HETNAM NA SODIUM ION
HETNAM ACT ACETATE ION
HETNAM EII 3-(2-{3-[(2,4-DIAMINO-6-CYCLOHEXYLPYRIMIDIN-5-YL)
HETNAM 2 EII OXY]PROPOXY}PHENYL)PROPANOIC ACID
HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
HETNAM PG4 TETRAETHYLENE GLYCOL
HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
FORMUL 2 NA NA 1+
FORMUL 3 ACT C2 H3 O2 1-
FORMUL 4 EII C22 H30 N4 O4
FORMUL 5 NAP C21 H28 N7 O17 P3
FORMUL 6 PG4 2(C8 H18 O5)
FORMUL 8 HOH *212(H2 O)
HELIX 1 AA1 LEU A 26 MET A 38 1 13
HELIX 2 AA2 ARG A 46 LEU A 52 1 7
HELIX 3 AA3 PRO A 53 ARG A 57 5 5
HELIX 4 AA4 SER A 83 LEU A 88 1 6
HELIX 5 AA5 GLY A 102 LEU A 110 1 9
HELIX 6 AA6 PRO A 111 ALA A 113 5 3
SHEET 1 AA1 8 GLN A 79 VAL A 81 0
SHEET 2 AA1 8 ARG A 63 VAL A 67 1 N VAL A 66 O GLN A 79
SHEET 3 AA1 8 THR A 41 GLY A 45 1 N VAL A 42 O ARG A 63
SHEET 4 AA1 8 THR A 97 GLY A 101 1 O TRP A 98 N VAL A 43
SHEET 5 AA1 8 VAL A 4 SER A 11 1 N GLY A 5 O VAL A 99
SHEET 6 AA1 8 ARG A 115 ASP A 122 1 O THR A 119 N GLN A 10
SHEET 7 AA1 8 ARG A 156 ARG A 164 -1 O HIS A 160 N VAL A 118
SHEET 8 AA1 8 TRP A 141 SER A 145 -1 N THR A 144 O SER A 161
SHEET 1 AA2 8 GLN A 79 VAL A 81 0
SHEET 2 AA2 8 ARG A 63 VAL A 67 1 N VAL A 66 O GLN A 79
SHEET 3 AA2 8 THR A 41 GLY A 45 1 N VAL A 42 O ARG A 63
SHEET 4 AA2 8 THR A 97 GLY A 101 1 O TRP A 98 N VAL A 43
SHEET 5 AA2 8 VAL A 4 SER A 11 1 N GLY A 5 O VAL A 99
SHEET 6 AA2 8 ARG A 115 ASP A 122 1 O THR A 119 N GLN A 10
SHEET 7 AA2 8 ARG A 156 ARG A 164 -1 O HIS A 160 N VAL A 118
SHEET 8 AA2 8 LEU A 149 VAL A 150 -1 N LEU A 149 O TYR A 157
SHEET 1 AA3 2 VAL A 15 GLY A 17 0
SHEET 2 AA3 2 ALA A 132 LEU A 133 -1 O ALA A 132 N ILE A 16
LINK NA NA A 201 O HOH A 373 1555 1455 2.11
LINK NA NA A 201 O HOH A 461 1555 1455 3.17
LINK NA NA A 201 O HOH A 466 1555 1555 2.03
LINK NA NA A 201 O HOH A 495 1555 1455 3.19
LINK NA NA A 201 O HOH A 507 1555 1555 3.01
CISPEP 1 ARG A 57 PRO A 58 0 3.05
CISPEP 2 GLY A 101 GLY A 102 0 2.82
CRYST1 28.722 66.265 44.138 90.00 92.21 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.034817 0.000000 0.001344 0.00000
SCALE2 0.000000 0.015091 0.000000 0.00000
SCALE3 0.000000 0.000000 0.022673 0.00000