HEADER IMMUNE SYSTEM 28-JUN-23 8TBB TITLE F9S, NOVEL TIM-3 TARGETING ANTIBODY, BOUND TO IGV DOMAIN OF TIM-3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: T-CELL IMMUNOGLOBULIN MUCIN RECEPTOR 3; COMPND 3 CHAIN: D; COMPND 4 FRAGMENT: IGV DOMAIN; COMPND 5 SYNONYM: TIM-3,HEPATITIS A VIRUS CELLULAR RECEPTOR 2, HAVCR-2,T-CELL COMPND 6 IMMUNOGLOBULIN AND MUCIN DOMAIN-CONTAINING PROTEIN 3,TIMD-3,T-CELL COMPND 7 MEMBRANE PROTEIN 3; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: F9S FAB HEAVY CHAIN; COMPND 11 CHAIN: H; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: F9S FAB LIGHT CHAIN; COMPND 15 CHAIN: L; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HAVCR2, TIM3, TIMD3; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_TAXID: 9606; SOURCE 11 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 12 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 15 ORGANISM_TAXID: 9606; SOURCE 16 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS FAB, IGV DOMAIN OF TIM-3, COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR V.OGANESYAN,N.VAN DYK,Y.MAZOR,C.YANG REVDAT 1 28-AUG-24 8TBB 0 JRNL AUTH E.CLANCY-THOMPSON,T.PERRY,S.PRYTS,A.JAISWAL,V.OGANESYAN, JRNL AUTH 2 N.VAN DYK,C.YANG,A.GARCIA,W.YU,J.MOYNIHAN,C.MILLER, JRNL AUTH 3 K.MULGREW,M.COBBOLD,Y.MAZOR,S.HAMMOND,K.POLLIZZI JRNL TITL GENERATION OF AZD7789, A NOVEL PD-1 AND TIM-3 TARGETING JRNL TITL 2 BISPECIFIC ANTIBODY, WHICH BINDS TO A DIFFERENTIATED EPITOPE JRNL TITL 3 OF TIM-3 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 22188 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.034 REMARK 3 FREE R VALUE TEST SET COUNT : 1117 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.57 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1535 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 65 REMARK 3 BIN FREE R VALUE : 0.2880 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4144 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.52300 REMARK 3 B22 (A**2) : -2.42900 REMARK 3 B33 (A**2) : -1.49900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.60700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.517 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.278 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.957 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.895 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4256 ; 0.001 ; 0.011 REMARK 3 BOND LENGTHS OTHERS (A): 3907 ; 0.000 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5791 ; 0.375 ; 1.655 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9026 ; 0.139 ; 1.570 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 537 ;10.580 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 22 ;16.287 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 670 ;17.972 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 651 ; 0.020 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5018 ; 0.001 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 982 ; 0.000 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 842 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 55 ; 0.241 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2007 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 243 ; 0.255 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2160 ; 3.801 ; 3.006 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2160 ; 3.794 ; 3.007 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2693 ; 5.495 ; 5.387 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2694 ; 5.494 ; 5.390 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2096 ; 5.124 ; 3.458 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2097 ; 5.123 ; 3.460 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 3098 ; 7.316 ; 6.112 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3099 ; 7.315 ; 6.113 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8TBB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275548. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.987 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI (111) DOUBLE CRYSTAL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23828 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 35.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS FOR THE TIM-3-F9S FAB COMPLEX REMARK 280 WERE OBTAINED IN A CONDITION MADE UP OF A COMBINATION OF 0.1M REMARK 280 BICINE, PH 9.0 AND 20% W/V PEG 6000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.50250 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER D 1 REMARK 465 PRO D 110 REMARK 465 LYS H 139 REMARK 465 SER H 140 REMARK 465 THR H 141 REMARK 465 SER H 142 REMARK 465 LYS H 224 REMARK 465 SER H 225 REMARK 465 CYS H 226 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR H 60 O HOH H 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL D 3 101.44 -31.37 REMARK 500 GLU D 41 -142.42 51.64 REMARK 500 ASP D 50 -160.87 -120.85 REMARK 500 ASP D 53 -176.05 -172.71 REMARK 500 ASN D 78 77.22 55.00 REMARK 500 PHE H 65 119.33 -33.41 REMARK 500 TRP H 100 -70.72 -110.47 REMARK 500 ILE H 105 -55.46 -125.22 REMARK 500 SER H 137 -74.25 -128.85 REMARK 500 ASP H 154 58.07 75.39 REMARK 500 THR H 170 -33.40 -130.13 REMARK 500 ASN H 214 57.45 33.84 REMARK 500 ASN L 30 -125.99 62.33 REMARK 500 ALA L 51 -50.44 81.61 REMARK 500 SER L 67 149.48 169.12 REMARK 500 ALA L 84 162.06 170.89 REMARK 500 ASN L 152 -16.63 82.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG D 60 0.08 SIDE CHAIN REMARK 500 ARG H 67 0.08 SIDE CHAIN REMARK 500 ARG L 103 0.20 SIDE CHAIN REMARK 500 ARG L 211 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG D 501 DBREF 8TBB D 1 110 UNP Q8TDQ0 HAVR2_HUMAN 22 131 DBREF 8TBB H 1 226 PDB 8TBB 8TBB 1 226 DBREF 8TBB L 1 214 PDB 8TBB 8TBB 1 214 SEQRES 1 D 110 SER GLU VAL GLU TYR ARG ALA GLU VAL GLY GLN ASN ALA SEQRES 2 D 110 TYR LEU PRO CYS PHE TYR THR PRO ALA ALA PRO GLY ASN SEQRES 3 D 110 LEU VAL PRO VAL CYS TRP GLY LYS GLY ALA CYS PRO VAL SEQRES 4 D 110 PHE GLU CYS GLY ASN VAL VAL LEU ARG THR ASP GLU ARG SEQRES 5 D 110 ASP VAL ASN TYR TRP THR SER ARG TYR TRP LEU ASN GLY SEQRES 6 D 110 ASP PHE ARG LYS GLY ASP VAL SER LEU THR ILE GLU ASN SEQRES 7 D 110 VAL THR LEU ALA ASP SER GLY ILE TYR CYS CYS ARG ILE SEQRES 8 D 110 GLN ILE PRO GLY ILE MET ASN ASP GLU LYS PHE ASN LEU SEQRES 9 D 110 LYS LEU VAL ILE LYS PRO SEQRES 1 H 226 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 H 226 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 H 226 PHE THR PHE SER SER TYR HIS MET SER TRP VAL ARG GLN SEQRES 4 H 226 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER ALA ILE SER SEQRES 5 H 226 GLY SER GLY ARG SER TYR TYR TYR LYS ASP SER PHE PHE SEQRES 6 H 226 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 H 226 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 H 226 ALA VAL TYR TYR CYS ALA THR SER TRP GLU THR ALA ARG SEQRES 9 H 226 ILE LEU PRO GLY ALA PHE ASP ILE TRP GLY ARG GLY THR SEQRES 10 H 226 LEU VAL THR VAL SER SER ALA SER THR LYS GLY PRO SER SEQRES 11 H 226 VAL PHE PRO LEU ALA PRO SER SER LYS SER THR SER GLY SEQRES 12 H 226 GLY THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR PHE SEQRES 13 H 226 PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY ALA LEU SEQRES 14 H 226 THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER SEQRES 15 H 226 SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL PRO SEQRES 16 H 226 SER SER SER LEU GLY THR GLN THR TYR ILE CYS ASN VAL SEQRES 17 H 226 ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG VAL SEQRES 18 H 226 GLU PRO LYS SER CYS SEQRES 1 L 214 ASP ILE GLN LEU THR GLN SER PRO SER PHE LEU SER ALA SEQRES 2 L 214 SER VAL GLY ASP ARG VAL THR ILE THR CYS ARG THR SER SEQRES 3 L 214 GLN ASP THR ASN SER TYR LEU ALA TRP TYR GLN GLN LYS SEQRES 4 L 214 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ALA ALA SER SEQRES 5 L 214 VAL LEU LEU SER GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 214 GLY SER GLY THR GLU PHE THR LEU THR ILE SER SER LEU SEQRES 7 L 214 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN LEU SEQRES 8 L 214 ALA SER SER PRO ILE THR PHE GLY GLN GLY THR ARG LEU SEQRES 9 L 214 GLU ILE LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 L 214 PHE PRO PRO SER ASP GLU GLN LEU LYS SER GLY THR ALA SEQRES 11 L 214 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 L 214 ALA LYS VAL GLN TRP LYS VAL ASP ASN ALA LEU GLN SER SEQRES 13 L 214 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 L 214 ASP SER THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 L 214 LYS ALA ASP TYR GLU LYS HIS LYS VAL TYR ALA CYS GLU SEQRES 16 L 214 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 L 214 PHE ASN ARG GLY GLU CYS HET NAG D 501 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *157(H2 O) HELIX 1 AA1 THR D 80 SER D 84 5 5 HELIX 2 AA2 THR H 28 TYR H 32 5 5 HELIX 3 AA3 ASP H 62 PHE H 65 5 4 HELIX 4 AA4 ARG H 87 THR H 91 5 5 HELIX 5 AA5 SER H 166 ALA H 168 5 3 HELIX 6 AA6 SER H 197 GLY H 200 5 4 HELIX 7 AA7 LYS H 211 ASN H 214 5 4 HELIX 8 AA8 GLN L 79 PHE L 83 5 5 HELIX 9 AA9 SER L 121 SER L 127 1 7 HELIX 10 AB1 LYS L 183 HIS L 189 1 7 SHEET 1 AA1 6 GLU D 4 GLU D 8 0 SHEET 2 AA1 6 GLU D 100 LYS D 109 1 O VAL D 107 N TYR D 5 SHEET 3 AA1 6 GLY D 85 ILE D 91 -1 N ILE D 91 O GLU D 100 SHEET 4 AA1 6 VAL D 30 LYS D 34 -1 N CYS D 31 O ARG D 90 SHEET 5 AA1 6 VAL D 45 THR D 49 -1 O THR D 49 N VAL D 30 SHEET 6 AA1 6 VAL D 54 TYR D 56 -1 O ASN D 55 N ARG D 48 SHEET 1 AA2 3 ALA D 13 LEU D 15 0 SHEET 2 AA2 3 LEU D 74 ILE D 76 -1 O LEU D 74 N LEU D 15 SHEET 3 AA2 3 TYR D 61 LEU D 63 -1 N TRP D 62 O THR D 75 SHEET 1 AA3 7 GLY D 95 ILE D 96 0 SHEET 2 AA3 7 SER H 57 TYR H 60 1 O TYR H 58 N GLY D 95 SHEET 3 AA3 7 GLU H 46 ILE H 51 -1 N ALA H 50 O TYR H 59 SHEET 4 AA3 7 MET H 34 GLN H 39 -1 N ARG H 38 O GLU H 46 SHEET 5 AA3 7 ALA H 92 THR H 98 -1 O TYR H 95 N VAL H 37 SHEET 6 AA3 7 THR H 117 VAL H 121 -1 O VAL H 119 N ALA H 92 SHEET 7 AA3 7 GLY H 10 VAL H 12 1 N VAL H 12 O THR H 120 SHEET 1 AA4 6 GLY D 95 ILE D 96 0 SHEET 2 AA4 6 SER H 57 TYR H 60 1 O TYR H 58 N GLY D 95 SHEET 3 AA4 6 GLU H 46 ILE H 51 -1 N ALA H 50 O TYR H 59 SHEET 4 AA4 6 MET H 34 GLN H 39 -1 N ARG H 38 O GLU H 46 SHEET 5 AA4 6 ALA H 92 THR H 98 -1 O TYR H 95 N VAL H 37 SHEET 6 AA4 6 ILE H 112 TRP H 113 -1 O ILE H 112 N THR H 98 SHEET 1 AA5 4 GLN H 3 SER H 7 0 SHEET 2 AA5 4 LEU H 18 SER H 25 -1 O SER H 21 N SER H 7 SHEET 3 AA5 4 THR H 78 MET H 83 -1 O MET H 83 N LEU H 18 SHEET 4 AA5 4 PHE H 68 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA6 4 SER H 130 LEU H 134 0 SHEET 2 AA6 4 THR H 145 TYR H 155 -1 O LEU H 151 N PHE H 132 SHEET 3 AA6 4 TYR H 186 PRO H 195 -1 O LEU H 188 N VAL H 152 SHEET 4 AA6 4 VAL H 173 THR H 175 -1 N HIS H 174 O VAL H 191 SHEET 1 AA7 4 SER H 130 LEU H 134 0 SHEET 2 AA7 4 THR H 145 TYR H 155 -1 O LEU H 151 N PHE H 132 SHEET 3 AA7 4 TYR H 186 PRO H 195 -1 O LEU H 188 N VAL H 152 SHEET 4 AA7 4 VAL H 179 LEU H 180 -1 N VAL H 179 O SER H 187 SHEET 1 AA8 3 THR H 161 TRP H 164 0 SHEET 2 AA8 3 TYR H 204 HIS H 210 -1 O ASN H 207 N SER H 163 SHEET 3 AA8 3 THR H 215 VAL H 221 -1 O THR H 215 N HIS H 210 SHEET 1 AA9 4 LEU L 4 SER L 7 0 SHEET 2 AA9 4 VAL L 19 THR L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AA9 4 GLU L 70 ILE L 75 -1 O LEU L 73 N ILE L 21 SHEET 4 AA9 4 PHE L 62 SER L 67 -1 N SER L 63 O THR L 74 SHEET 1 AB1 6 PHE L 10 SER L 14 0 SHEET 2 AB1 6 THR L 102 LYS L 107 1 O ARG L 103 N LEU L 11 SHEET 3 AB1 6 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB1 6 LEU L 33 GLN L 38 -1 N GLN L 38 O THR L 85 SHEET 5 AB1 6 LYS L 45 TYR L 49 -1 O ILE L 48 N TRP L 35 SHEET 6 AB1 6 VAL L 53 LEU L 54 -1 O VAL L 53 N TYR L 49 SHEET 1 AB2 4 PHE L 10 SER L 14 0 SHEET 2 AB2 4 THR L 102 LYS L 107 1 O ARG L 103 N LEU L 11 SHEET 3 AB2 4 ALA L 84 GLN L 90 -1 N TYR L 86 O THR L 102 SHEET 4 AB2 4 THR L 97 PHE L 98 -1 O THR L 97 N GLN L 90 SHEET 1 AB3 4 SER L 114 PHE L 118 0 SHEET 2 AB3 4 THR L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 AB3 4 TYR L 173 SER L 182 -1 O LEU L 179 N VAL L 132 SHEET 4 AB3 4 SER L 159 VAL L 163 -1 N GLN L 160 O THR L 178 SHEET 1 AB4 4 ALA L 153 LEU L 154 0 SHEET 2 AB4 4 LYS L 145 VAL L 150 -1 N VAL L 150 O ALA L 153 SHEET 3 AB4 4 VAL L 191 THR L 197 -1 O GLU L 195 N GLN L 147 SHEET 4 AB4 4 VAL L 205 ASN L 210 -1 O LYS L 207 N CYS L 194 SSBOND 1 CYS D 17 CYS D 89 1555 1555 2.09 SSBOND 2 CYS D 31 CYS D 42 1555 1555 2.29 SSBOND 3 CYS D 37 CYS D 88 1555 1555 2.02 SSBOND 4 CYS H 22 CYS H 96 1555 1555 2.19 SSBOND 5 CYS H 150 CYS H 206 1555 1555 2.05 SSBOND 6 CYS L 23 CYS L 88 1555 1555 2.38 SSBOND 7 CYS L 134 CYS L 194 1555 1555 2.10 CISPEP 1 PHE H 156 PRO H 157 0 -14.62 CISPEP 2 GLU H 158 PRO H 159 0 -19.16 CISPEP 3 SER L 7 PRO L 8 0 -6.45 CISPEP 4 SER L 94 PRO L 95 0 -3.77 CISPEP 5 TYR L 140 PRO L 141 0 7.64 CRYST1 72.805 57.005 80.453 90.00 106.00 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013735 0.000000 0.003939 0.00000 SCALE2 0.000000 0.017542 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012931 0.00000