HEADER OXIDOREDUCTASE/INHIBITOR 29-JUN-23 8TBR
TITLE CRYSTAL STRUCTURE OF DIHYDROFOLATE REDUCTASE (DHFR) FROM MYCOBACTERIUM
TITLE 2 ULCERANS AGY99 IN COMPLEX WITH NADP AND INHIBITOR MAM758
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: MYULA.01062.A.B13;
COMPND 5 EC: 1.5.1.3;
COMPND 6 ENGINEERED: YES;
COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM ULCERANS;
SOURCE 3 ORGANISM_TAXID: 362242;
SOURCE 4 STRAIN: AGY99;
SOURCE 5 GENE: DFRA, MUL_2179;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3);
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MYULA.01062.A.B13
KEYWDS SSGCID, STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR
KEYWDS 2 INFECTIOUS DISEASE, DIHYDROFOLATE REDUCTASE, OXIDOREDUCTASE-
KEYWDS 3 OXIDOREDUCTASE INHIBITOR COMPLEX, OXIDOREDUCTASE, OXIDOREDUCTASE-
KEYWDS 4 INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE
AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID)
REVDAT 3 27-NOV-24 8TBR 1 JRNL
REVDAT 2 06-NOV-24 8TBR 1 JRNL
REVDAT 1 28-AUG-24 8TBR 0
JRNL AUTH M.ANDRADE MEIRELLES,V.M.ALMEIDA,J.R.SULLIVAN,I.DE TOLEDO,
JRNL AUTH 2 C.V.DOS REIS,M.R.CUNHA,R.ZIGWEID,A.SHIM,B.SANKARAN,
JRNL AUTH 3 E.L.WOODWARD,S.SEIBOLD,L.LIU,M.R.MIAN,K.P.BATTAILE,J.RILEY,
JRNL AUTH 4 C.DUNCAN,F.R.C.SIMEONS,L.FERGUSON,H.JOJI,K.D.READ,S.LOVELL,
JRNL AUTH 5 B.L.STAKER,M.A.BEHR,R.A.PILLI,R.M.COUNAGO
JRNL TITL RATIONAL EXPLORATION OF 2,4-DIAMINOPYRIMIDINES AS DHFR
JRNL TITL 2 INHIBITORS ACTIVE AGAINST MYCOBACTERIUM ABSCESSUS AND
JRNL TITL 3 MYCOBACTERIUM AVIUM , TWO EMERGING HUMAN PATHOGENS.
JRNL REF J.MED.CHEM. V. 67 19143 2024
JRNL REFN ISSN 0022-2623
JRNL PMID 39468773
JRNL DOI 10.1021/ACS.JMEDCHEM.4C01594
REMARK 2
REMARK 2 RESOLUTION. 1.75 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.21RC1_4933
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.20
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.010
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8
REMARK 3 NUMBER OF REFLECTIONS : 16573
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.163
REMARK 3 R VALUE (WORKING SET) : 0.161
REMARK 3 FREE R VALUE : 0.204
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750
REMARK 3 FREE R VALUE TEST SET COUNT : 788
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 24.2000 - 3.1800 1.00 2648 153 0.1372 0.1669
REMARK 3 2 3.1800 - 2.5200 1.00 2680 106 0.1494 0.2104
REMARK 3 3 2.5200 - 2.2000 1.00 2610 131 0.1529 0.2150
REMARK 3 4 2.2000 - 2.0000 1.00 2629 133 0.1678 0.1862
REMARK 3 5 2.0000 - 1.8600 1.00 2613 151 0.1978 0.2670
REMARK 3 6 1.8600 - 1.7500 0.99 2605 114 0.2570 0.2998
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.10
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.670
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.010 1428
REMARK 3 ANGLE : 1.067 1972
REMARK 3 CHIRALITY : 0.055 214
REMARK 3 PLANARITY : 0.014 252
REMARK 3 DIHEDRAL : 13.463 537
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 9
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 26 )
REMARK 3 ORIGIN FOR THE GROUP (A): 4.2178 -6.5953 16.5709
REMARK 3 T TENSOR
REMARK 3 T11: 0.0830 T22: 0.0899
REMARK 3 T33: 0.1091 T12: -0.0053
REMARK 3 T13: 0.0018 T23: -0.0243
REMARK 3 L TENSOR
REMARK 3 L11: 2.0497 L22: 2.5665
REMARK 3 L33: 2.6650 L12: 0.0155
REMARK 3 L13: -0.2818 L23: 0.1686
REMARK 3 S TENSOR
REMARK 3 S11: 0.0166 S12: -0.2707 S13: 0.1941
REMARK 3 S21: 0.1697 S22: 0.0263 S23: -0.0671
REMARK 3 S31: -0.3284 S32: 0.1199 S33: 0.0826
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 37 )
REMARK 3 ORIGIN FOR THE GROUP (A): -8.0038 -5.9435 13.5228
REMARK 3 T TENSOR
REMARK 3 T11: 0.1289 T22: 0.2020
REMARK 3 T33: 0.1228 T12: 0.0460
REMARK 3 T13: -0.0206 T23: -0.0706
REMARK 3 L TENSOR
REMARK 3 L11: 1.0384 L22: 1.9981
REMARK 3 L33: 3.3465 L12: -0.4288
REMARK 3 L13: -1.0815 L23: 2.1763
REMARK 3 S TENSOR
REMARK 3 S11: -0.1192 S12: -0.4510 S13: 0.2160
REMARK 3 S21: -0.0872 S22: -0.2395 S23: 0.2728
REMARK 3 S31: -0.5836 S32: -0.6452 S33: -0.1194
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 38 THROUGH 62 )
REMARK 3 ORIGIN FOR THE GROUP (A): -3.1933 -18.6817 12.9250
REMARK 3 T TENSOR
REMARK 3 T11: 0.0820 T22: 0.0929
REMARK 3 T33: 0.1037 T12: -0.0066
REMARK 3 T13: 0.0269 T23: -0.0135
REMARK 3 L TENSOR
REMARK 3 L11: 2.2497 L22: 2.4695
REMARK 3 L33: 2.7711 L12: -0.9491
REMARK 3 L13: -0.0418 L23: -0.3057
REMARK 3 S TENSOR
REMARK 3 S11: -0.0834 S12: -0.1328 S13: -0.1082
REMARK 3 S21: 0.1721 S22: 0.0442 S23: 0.1622
REMARK 3 S31: 0.0648 S32: -0.1291 S33: 0.0555
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 78 )
REMARK 3 ORIGIN FOR THE GROUP (A): 1.7595 -26.8570 8.8617
REMARK 3 T TENSOR
REMARK 3 T11: 0.1283 T22: 0.0985
REMARK 3 T33: 0.1417 T12: -0.0089
REMARK 3 T13: 0.0329 T23: -0.0054
REMARK 3 L TENSOR
REMARK 3 L11: 3.1507 L22: 2.9418
REMARK 3 L33: 2.4310 L12: -0.5195
REMARK 3 L13: -0.1270 L23: -0.4195
REMARK 3 S TENSOR
REMARK 3 S11: -0.0879 S12: -0.0202 S13: -0.1120
REMARK 3 S21: -0.0172 S22: -0.0400 S23: -0.1595
REMARK 3 S31: 0.1726 S32: 0.0055 S33: 0.0768
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 79 THROUGH 102 )
REMARK 3 ORIGIN FOR THE GROUP (A): -0.2985 -19.0097 0.5601
REMARK 3 T TENSOR
REMARK 3 T11: 0.1253 T22: 0.1212
REMARK 3 T33: 0.1277 T12: -0.0154
REMARK 3 T13: 0.0019 T23: 0.0099
REMARK 3 L TENSOR
REMARK 3 L11: 0.7053 L22: 3.7969
REMARK 3 L33: 2.8556 L12: -0.4527
REMARK 3 L13: -0.0932 L23: 0.4060
REMARK 3 S TENSOR
REMARK 3 S11: -0.0095 S12: 0.1030 S13: -0.0258
REMARK 3 S21: -0.5395 S22: 0.0366 S23: 0.0844
REMARK 3 S31: 0.0486 S32: -0.0725 S33: 0.0578
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 103 THROUGH 122 )
REMARK 3 ORIGIN FOR THE GROUP (A): 5.2956 -6.0439 7.0948
REMARK 3 T TENSOR
REMARK 3 T11: 0.1030 T22: 0.0874
REMARK 3 T33: 0.1055 T12: -0.0152
REMARK 3 T13: -0.0092 T23: 0.0159
REMARK 3 L TENSOR
REMARK 3 L11: 1.9197 L22: 2.1246
REMARK 3 L33: 1.8595 L12: -0.7859
REMARK 3 L13: 0.0322 L23: -0.1007
REMARK 3 S TENSOR
REMARK 3 S11: -0.0575 S12: 0.1294 S13: 0.0823
REMARK 3 S21: 0.0249 S22: -0.1260 S23: -0.1748
REMARK 3 S31: -0.3524 S32: 0.1054 S33: -0.0310
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 132 )
REMARK 3 ORIGIN FOR THE GROUP (A): 13.7445 -6.2712 22.7711
REMARK 3 T TENSOR
REMARK 3 T11: 0.1510 T22: 0.3005
REMARK 3 T33: 0.2035 T12: -0.0014
REMARK 3 T13: -0.0067 T23: -0.0637
REMARK 3 L TENSOR
REMARK 3 L11: 2.4814 L22: 1.2712
REMARK 3 L33: 2.2141 L12: -0.5936
REMARK 3 L13: -0.0464 L23: 0.6864
REMARK 3 S TENSOR
REMARK 3 S11: -0.1409 S12: -0.7038 S13: 0.3138
REMARK 3 S21: 0.1830 S22: 0.3556 S23: -0.5063
REMARK 3 S31: -0.0839 S32: 0.3033 S33: -0.0088
REMARK 3 TLS GROUP : 8
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 133 THROUGH 145 )
REMARK 3 ORIGIN FOR THE GROUP (A): 8.5326 0.1542 3.4262
REMARK 3 T TENSOR
REMARK 3 T11: 0.1565 T22: 0.1554
REMARK 3 T33: 0.1271 T12: -0.0292
REMARK 3 T13: 0.0430 T23: 0.0318
REMARK 3 L TENSOR
REMARK 3 L11: 0.2062 L22: 1.4876
REMARK 3 L33: 2.1743 L12: 0.0206
REMARK 3 L13: 0.0629 L23: -0.5522
REMARK 3 S TENSOR
REMARK 3 S11: 0.0834 S12: 0.0592 S13: 0.1173
REMARK 3 S21: 0.0773 S22: -0.0688 S23: -0.2141
REMARK 3 S31: -0.5274 S32: 0.3285 S33: 0.0898
REMARK 3 TLS GROUP : 9
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 165 )
REMARK 3 ORIGIN FOR THE GROUP (A): -0.9202 3.7461 12.6820
REMARK 3 T TENSOR
REMARK 3 T11: 0.2794 T22: 0.1150
REMARK 3 T33: 0.1420 T12: 0.0613
REMARK 3 T13: -0.0160 T23: -0.0114
REMARK 3 L TENSOR
REMARK 3 L11: 1.5303 L22: 1.6613
REMARK 3 L33: 4.2642 L12: -0.1775
REMARK 3 L13: -1.3069 L23: 0.5616
REMARK 3 S TENSOR
REMARK 3 S11: 0.0700 S12: 0.0838 S13: 0.1125
REMARK 3 S21: 0.2432 S22: -0.0558 S23: -0.1269
REMARK 3 S31: -0.5746 S32: -0.4465 S33: 0.0486
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 8TBR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-23.
REMARK 100 THE DEPOSITION ID IS D_1000275623.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 26-JUN-23
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 6.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : N
REMARK 200 RADIATION SOURCE : SEALED TUBE
REMARK 200 BEAMLINE : NULL
REMARK 200 X-RAY GENERATOR MODEL : BRUKER D8 QUEST
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418
REMARK 200 MONOCHROMATOR : HELIOS MULTILAYER
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : BRUKER PHOTON III
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16609
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750
REMARK 200 RESOLUTION RANGE LOW (A) : 43.950
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9
REMARK 200 DATA REDUNDANCY : 12.40
REMARK 200 R MERGE (I) : 0.11800
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : 8.50
REMARK 200 R MERGE FOR SHELL (I) : 1.40400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: NULL
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 43.87
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS E4: 12.5%(V/V) MPD,
REMARK 280 12.5%(V/V) PEG 1000, 12.5%(W/V) PEG 3350, 100 MM IMIDAZOLE/MES,
REMARK 280 PH 6.5, 30 MM DIETHYLENE GLYCOL, 30 MM TRIETHYLENEGLYCOL, 30 MM
REMARK 280 TETRAETHYLENE GLYCOL AND 30 MM PENTAETHYLENE GLYCOL.
REMARK 280 MYULA.01062.A.B13.PS38720 AT 8.9 MG/ML. 2MM MAM758 AND 2MM NADP
REMARK 280 ADDED TO THE PROTEIN PRIOR TO CRYSTALLIZATION. PLATE 13387 WELL
REMARK 280 E4 DROP 2, CRYO: DIRECT, VAPOR DIFFUSION, SITTING DROP,
REMARK 280 TEMPERATURE 291K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.16600
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -7
REMARK 465 ALA A -6
REMARK 465 HIS A -5
REMARK 465 HIS A -4
REMARK 465 HIS A -3
REMARK 465 HIS A -2
REMARK 465 HIS A -1
REMARK 465 HIS A 0
REMARK 465 MET A 1
REMARK 465 THR A 2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 PRO A 23 39.11 -87.63
REMARK 500
REMARK 500 REMARK: NULL
DBREF 8TBR A 1 165 UNP A0PQG8 A0PQG8_MYCUA 1 165
SEQADV 8TBR MET A -7 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TBR ALA A -6 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TBR HIS A -5 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TBR HIS A -4 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TBR HIS A -3 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TBR HIS A -2 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TBR HIS A -1 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TBR HIS A 0 UNP A0PQG8 EXPRESSION TAG
SEQADV 8TBR SER A 89 UNP A0PQG8 CYS 89 ENGINEERED MUTATION
SEQADV 8TBR ALA A 96 UNP A0PQG8 GLU 96 ENGINEERED MUTATION
SEQRES 1 A 173 MET ALA HIS HIS HIS HIS HIS HIS MET THR SER VAL GLY
SEQRES 2 A 173 LEU ILE TRP ALA GLN SER THR SER GLY VAL ILE GLY ARG
SEQRES 3 A 173 ASP GLY GLY ILE PRO TRP ARG LEU PRO GLU ASP LEU ALA
SEQRES 4 A 173 HIS PHE LYS ARG LEU THR MET GLY HIS THR VAL VAL MET
SEQRES 5 A 173 GLY ARG ARG THR TRP ASP SER LEU PRO ALA ALA HIS ARG
SEQRES 6 A 173 PRO LEU PRO GLY ARG ARG ASN VAL VAL VAL THR ARG GLN
SEQRES 7 A 173 THR GLY LEU VAL ALA HIS GLY ALA GLN VAL VAL GLY SER
SEQRES 8 A 173 LEU GLU GLN ALA LEU SER PRO ALA GLU PRO ASP ALA ALA
SEQRES 9 A 173 THR TRP VAL ILE GLY GLY ALA GLN ILE TYR ALA LEU ALA
SEQRES 10 A 173 LEU PRO LEU ALA ASN ARG CYS GLU VAL THR GLU VAL ASP
SEQRES 11 A 173 VAL ASP LEU PRO PRO GLU ASP GLU ASP ALA LEU ALA PRO
SEQRES 12 A 173 VAL LEU ASP GLN THR TRP ALA GLY THR SER GLY GLU TRP
SEQRES 13 A 173 LEU VAL SER ARG SER GLY LEU ARG TYR ARG MET HIS SER
SEQRES 14 A 173 TYR ARG ARG LEU
HET NAP A 201 48
HET HIJ A 202 30
HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
HETNAM HIJ 3-(2-{3-[(2,4-DIAMINO-6-PHENYLPYRIMIDIN-5-YL)
HETNAM 2 HIJ OXY]PROPOXY}PHENYL)PROPANOIC ACID
HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE
FORMUL 2 NAP C21 H28 N7 O17 P3
FORMUL 3 HIJ C22 H24 N4 O4
FORMUL 4 HOH *154(H2 O)
HELIX 1 AA1 LEU A 26 MET A 38 1 13
HELIX 2 AA2 ARG A 46 LEU A 52 1 7
HELIX 3 AA3 PRO A 53 ARG A 57 5 5
HELIX 4 AA4 SER A 83 LEU A 88 1 6
HELIX 5 AA5 GLY A 102 LEU A 110 1 9
HELIX 6 AA6 PRO A 111 ALA A 113 5 3
SHEET 1 AA1 8 GLN A 79 VAL A 81 0
SHEET 2 AA1 8 ARG A 63 VAL A 67 1 N VAL A 66 O GLN A 79
SHEET 3 AA1 8 THR A 41 GLY A 45 1 N VAL A 42 O ARG A 63
SHEET 4 AA1 8 THR A 97 GLY A 101 1 O TRP A 98 N VAL A 43
SHEET 5 AA1 8 VAL A 4 SER A 11 1 N GLY A 5 O VAL A 99
SHEET 6 AA1 8 ARG A 115 ASP A 122 1 O THR A 119 N GLN A 10
SHEET 7 AA1 8 ARG A 156 ARG A 164 -1 O HIS A 160 N VAL A 118
SHEET 8 AA1 8 TRP A 141 SER A 145 -1 N ALA A 142 O ARG A 163
SHEET 1 AA2 8 GLN A 79 VAL A 81 0
SHEET 2 AA2 8 ARG A 63 VAL A 67 1 N VAL A 66 O GLN A 79
SHEET 3 AA2 8 THR A 41 GLY A 45 1 N VAL A 42 O ARG A 63
SHEET 4 AA2 8 THR A 97 GLY A 101 1 O TRP A 98 N VAL A 43
SHEET 5 AA2 8 VAL A 4 SER A 11 1 N GLY A 5 O VAL A 99
SHEET 6 AA2 8 ARG A 115 ASP A 122 1 O THR A 119 N GLN A 10
SHEET 7 AA2 8 ARG A 156 ARG A 164 -1 O HIS A 160 N VAL A 118
SHEET 8 AA2 8 LEU A 149 VAL A 150 -1 N LEU A 149 O TYR A 157
SHEET 1 AA3 2 VAL A 15 GLY A 17 0
SHEET 2 AA3 2 ALA A 132 LEU A 133 -1 O ALA A 132 N ILE A 16
CISPEP 1 ARG A 57 PRO A 58 0 9.42
CISPEP 2 GLY A 101 GLY A 102 0 5.41
CRYST1 28.606 66.332 43.973 90.00 91.16 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.034958 0.000000 0.000710 0.00000
SCALE2 0.000000 0.015076 0.000000 0.00000
SCALE3 0.000000 0.000000 0.022746 0.00000