HEADER DE NOVO PROTEIN 30-JUN-23 8TCF TITLE INTEGRIN ALPHA-V BETA-8 IN COMPLEX WITH MINIBINDER B8_BP_DSULF CAVEAT 8TCF RESIDUES ASP B 398 AND ASN B 404 THAT ARE NEXT TO EACH OTHER CAVEAT 2 8TCF IN THE SAMPLE SEQUENCE ARE NOT PROPERLY LINKED: DISTANCE CAVEAT 3 8TCF BETWEEN C AND N IS 9.20. COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTEGRIN ALPHA-V HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: INTEGRIN BETA-8; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: MINIBINDER B8_BP_DSLF; COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ITGAV, MSK8, VNRA, VTNR; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: ITGB8; SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 17 ORGANISM_TAXID: 32630; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS COMPLEX, HETERODIMER, SIGNALING, TGF-BETA, DE NOVO PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR M.G.CAMPBELL,A.FERNANDEZ,A.ROY,J.KRAFT,D.BAKER REVDAT 1 27-SEP-23 8TCF 0 JRNL AUTH A.ROY,L.SHI,A.CHANG,X.DONG,A.FERNANDEZ,J.C.KRAFT,J.LI, JRNL AUTH 2 V.Q.LE,R.V.WINEGAR,G.M.CHERF,D.SLOCUM,P.D.POULSON, JRNL AUTH 3 G.E.CASPER,M.L.VALLECILLO-ZUNIGA,J.C.VALDOZ,M.C.MIRANDA, JRNL AUTH 4 H.BAI,Y.KIPNIS,A.OLSHEFSKY,T.PRIYA,L.CARTER,R.RAVICHANDRAN, JRNL AUTH 5 C.M.CHOW,M.R.JOHNSON,S.CHENG,M.SMITH,C.OVERED-SAYER, JRNL AUTH 6 D.K.FINCH,D.LOWE,A.K.BERA,G.MATUTE-BELLO,T.P.BIRKLAND, JRNL AUTH 7 F.DIMAIO,G.RAGHU,J.R.COCHRAN,L.J.STEWART,M.G.CAMPBELL, JRNL AUTH 8 P.M.VAN RY,T.SPRINGER,D.BAKER JRNL TITL DE NOVO DESIGN OF HIGHLY SELECTIVE MINIPROTEIN INHIBITORS OF JRNL TITL 2 INTEGRINS ALPHA V BETA 6 AND ALPHA V BETA 8. JRNL REF NAT COMMUN V. 14 5660 2023 JRNL REFN ESSN 2041-1723 JRNL PMID 37704610 JRNL DOI 10.1038/S41467-023-41272-Z REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.900 REMARK 3 NUMBER OF PARTICLES : 116587 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 8TCF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275659. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : TERNARY COMPLEX OF INTEGRIN REMARK 245 HETERODIMER (ALPHA-V BETA-8) REMARK 245 AND THE DE NOVO MINIBINDER REMARK 245 PROTEIN B8_BP_DSLF REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : INTEGRIN EXPRESSED IN EXPICHO REMARK 245 CELLS, MINIBINDER EXPRESSED IN E. COLI REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : TFS GLACIOS REMARK 245 DETECTOR TYPE : GATAN K3 (6K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 1000.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 5000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 200 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 30 49.75 -149.24 REMARK 500 SER A 32 -20.31 77.83 REMARK 500 PRO A 48 82.25 -68.94 REMARK 500 TRP A 61 -52.18 -148.48 REMARK 500 SER A 63 -106.64 64.73 REMARK 500 GLN A 102 -123.59 53.15 REMARK 500 THR A 116 164.23 72.14 REMARK 500 ASP A 148 -171.68 70.39 REMARK 500 ASN A 232 -0.34 -147.21 REMARK 500 VAL B 150 -78.63 -128.74 REMARK 500 SER B 205 -141.38 -111.15 REMARK 500 GLU B 233 48.63 -80.04 REMARK 500 ASP B 243 -49.90 -137.82 REMARK 500 LYS B 268 -95.38 -102.21 REMARK 500 ASP C 40 -70.34 67.58 REMARK 500 GLU C 51 -68.90 44.66 REMARK 500 THR C 64 -86.39 -124.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 378 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 232 OD1 REMARK 620 2 ASP A 234 OD1 76.3 REMARK 620 3 ASP A 234 OD2 79.3 55.7 REMARK 620 4 ILE A 236 O 141.9 84.6 116.1 REMARK 620 5 ASP A 238 OD1 108.4 165.3 110.8 98.4 REMARK 620 6 ASP A 238 OD2 77.2 138.1 146.4 97.1 56.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 501 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 286 OD1 REMARK 620 2 ASP A 288 OD1 80.1 REMARK 620 3 ASP A 288 OD2 75.5 56.2 REMARK 620 4 TYR A 290 O 149.2 84.3 116.7 REMARK 620 5 ASP A 292 OD1 109.2 164.3 112.8 92.5 REMARK 620 6 ASP A 292 OD2 77.1 139.3 144.1 98.6 56.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 349 OD1 REMARK 620 2 ASP A 351 OD1 89.6 REMARK 620 3 ASP A 353 OD1 81.6 90.4 REMARK 620 4 PHE A 355 O 78.1 167.5 85.4 REMARK 620 5 ASP A 357 OD1 144.7 106.4 128.2 85.3 REMARK 620 6 ASP A 357 OD2 105.7 83.0 170.0 102.6 47.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 414 OD1 REMARK 620 2 ASP A 416 OD1 89.9 REMARK 620 3 ASN A 418 OD1 82.7 82.7 REMARK 620 4 TYR A 420 O 83.1 158.9 76.6 REMARK 620 5 ASP A 422 OD1 125.1 108.6 148.7 91.6 REMARK 620 6 ASP A 422 OD2 86.1 82.9 161.8 116.3 48.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 114 OG REMARK 620 2 SER B 116 OG 97.0 REMARK 620 3 GLU B 212 OE2 98.3 150.4 REMARK 620 4 ASP C 12 OD1 108.6 89.8 108.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B2001 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 151 OD2 REMARK 620 2 ASN B 207 OD1 111.8 REMARK 620 3 ASP B 209 O 167.9 67.9 REMARK 620 4 ASP B 209 OD1 95.4 83.6 72.5 REMARK 620 5 PRO B 211 O 96.3 142.2 89.7 119.4 REMARK 620 6 GLU B 212 OE1 88.9 83.0 103.0 166.5 72.6 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-41153 RELATED DB: EMDB REMARK 900 INTEGRIN ALPHA-V BETA-8 IN COMPLEX WITH MINIBINDER B8_BP_DSULF DBREF 8TCF A 1 444 UNP P06756 ITAV_HUMAN 31 473 DBREF 8TCF B 62 425 UNP P26012 ITB8_HUMAN 104 467 DBREF 8TCF C 1 75 PDB 8TCF 8TCF 1 75 SEQADV 8TCF GLY A 400 UNP P06756 INSERTION SEQADV 8TCF CYS A 401 UNP P06756 MET 430 CONFLICT SEQADV 8TCF CYS B 259 UNP P26012 VAL 301 CONFLICT SEQADV 8TCF B UNP P26012 VAL 441 DELETION SEQADV 8TCF B UNP P26012 THR 442 DELETION SEQADV 8TCF B UNP P26012 GLY 443 DELETION SEQADV 8TCF B UNP P26012 GLY 444 DELETION SEQADV 8TCF B UNP P26012 LYS 445 DELETION SEQRES 1 A 444 PHE ASN LEU ASP VAL ASP SER PRO ALA GLU TYR SER GLY SEQRES 2 A 444 PRO GLU GLY SER TYR PHE GLY PHE ALA VAL ASP PHE PHE SEQRES 3 A 444 VAL PRO SER ALA SER SER ARG MET PHE LEU LEU VAL GLY SEQRES 4 A 444 ALA PRO LYS ALA ASN THR THR GLN PRO GLY ILE VAL GLU SEQRES 5 A 444 GLY GLY GLN VAL LEU LYS CYS ASP TRP SER SER THR ARG SEQRES 6 A 444 ARG CYS GLN PRO ILE GLU PHE ASP ALA THR GLY ASN ARG SEQRES 7 A 444 ASP TYR ALA LYS ASP ASP PRO LEU GLU PHE LYS SER HIS SEQRES 8 A 444 GLN TRP PHE GLY ALA SER VAL ARG SER LYS GLN ASP LYS SEQRES 9 A 444 ILE LEU ALA CYS ALA PRO LEU TYR HIS TRP ARG THR GLU SEQRES 10 A 444 MET LYS GLN GLU ARG GLU PRO VAL GLY THR CYS PHE LEU SEQRES 11 A 444 GLN ASP GLY THR LYS THR VAL GLU TYR ALA PRO CYS ARG SEQRES 12 A 444 SER GLN ASP ILE ASP ALA ASP GLY GLN GLY PHE CYS GLN SEQRES 13 A 444 GLY GLY PHE SER ILE ASP PHE THR LYS ALA ASP ARG VAL SEQRES 14 A 444 LEU LEU GLY GLY PRO GLY SER PHE TYR TRP GLN GLY GLN SEQRES 15 A 444 LEU ILE SER ASP GLN VAL ALA GLU ILE VAL SER LYS TYR SEQRES 16 A 444 ASP PRO ASN VAL TYR SER ILE LYS TYR ASN ASN GLN LEU SEQRES 17 A 444 ALA THR ARG THR ALA GLN ALA ILE PHE ASP ASP SER TYR SEQRES 18 A 444 LEU GLY TYR SER VAL ALA VAL GLY ASP PHE ASN GLY ASP SEQRES 19 A 444 GLY ILE ASP ASP PHE VAL SER GLY VAL PRO ARG ALA ALA SEQRES 20 A 444 ARG THR LEU GLY MET VAL TYR ILE TYR ASP GLY LYS ASN SEQRES 21 A 444 MET SER SER LEU TYR ASN PHE THR GLY GLU GLN MET ALA SEQRES 22 A 444 ALA TYR PHE GLY PHE SER VAL ALA ALA THR ASP ILE ASN SEQRES 23 A 444 GLY ASP ASP TYR ALA ASP VAL PHE ILE GLY ALA PRO LEU SEQRES 24 A 444 PHE MET ASP ARG GLY SER ASP GLY LYS LEU GLN GLU VAL SEQRES 25 A 444 GLY GLN VAL SER VAL SER LEU GLN ARG ALA SER GLY ASP SEQRES 26 A 444 PHE GLN THR THR LYS LEU ASN GLY PHE GLU VAL PHE ALA SEQRES 27 A 444 ARG PHE GLY SER ALA ILE ALA PRO LEU GLY ASP LEU ASP SEQRES 28 A 444 GLN ASP GLY PHE ASN ASP ILE ALA ILE ALA ALA PRO TYR SEQRES 29 A 444 GLY GLY GLU ASP LYS LYS GLY ILE VAL TYR ILE PHE ASN SEQRES 30 A 444 GLY ARG SER THR GLY LEU ASN ALA VAL PRO SER GLN ILE SEQRES 31 A 444 LEU GLU GLY GLN TRP ALA ALA ARG SER GLY CYS PRO PRO SEQRES 32 A 444 SER PHE GLY TYR SER MET LYS GLY ALA THR ASP ILE ASP SEQRES 33 A 444 LYS ASN GLY TYR PRO ASP LEU ILE VAL GLY ALA PHE GLY SEQRES 34 A 444 VAL ASP ARG ALA ILE LEU TYR ARG ALA ARG PRO VAL ILE SEQRES 35 A 444 THR VAL SEQRES 1 B 359 VAL HIS VAL ILE ILE PRO THR GLU ASN GLU ILE ASN THR SEQRES 2 B 359 GLN VAL THR PRO GLY GLU VAL SER ILE GLN LEU ARG PRO SEQRES 3 B 359 GLY ALA GLU ALA ASN PHE MET LEU LYS VAL HIS PRO LEU SEQRES 4 B 359 LYS LYS TYR PRO VAL ASP LEU TYR TYR LEU VAL ASP VAL SEQRES 5 B 359 SER ALA SER MET HIS ASN ASN ILE GLU LYS LEU ASN SER SEQRES 6 B 359 VAL GLY ASN ASP LEU SER ARG LYS MET ALA PHE PHE SER SEQRES 7 B 359 ARG ASP PHE ARG LEU GLY PHE GLY SER TYR VAL ASP LYS SEQRES 8 B 359 THR VAL SER PRO TYR ILE SER ILE HIS PRO GLU ARG ILE SEQRES 9 B 359 HIS ASN GLN CYS SER ASP TYR ASN LEU ASP CYS MET PRO SEQRES 10 B 359 PRO HIS GLY TYR ILE HIS VAL LEU SER LEU THR GLU ASN SEQRES 11 B 359 ILE THR GLU PHE GLU LYS ALA VAL HIS ARG GLN LYS ILE SEQRES 12 B 359 SER GLY ASN ILE ASP THR PRO GLU GLY GLY PHE ASP ALA SEQRES 13 B 359 MET LEU GLN ALA ALA VAL CYS GLU SER HIS ILE GLY TRP SEQRES 14 B 359 ARG LYS GLU ALA LYS ARG LEU LEU LEU VAL MET THR ASP SEQRES 15 B 359 GLN THR SER HIS LEU ALA LEU ASP SER LYS LEU ALA GLY SEQRES 16 B 359 ILE VAL CYS PRO ASN ASP GLY ASN CYS HIS LEU LYS ASN SEQRES 17 B 359 ASN VAL TYR VAL LYS SER THR THR MET GLU HIS PRO SER SEQRES 18 B 359 LEU GLY GLN LEU SER GLU LYS LEU ILE ASP ASN ASN ILE SEQRES 19 B 359 ASN VAL ILE PHE ALA VAL GLN GLY LYS GLN PHE HIS TRP SEQRES 20 B 359 TYR LYS ASP LEU LEU PRO LEU LEU PRO GLY THR ILE ALA SEQRES 21 B 359 GLY GLU ILE GLU SER LYS ALA ALA ASN LEU ASN ASN LEU SEQRES 22 B 359 VAL VAL GLU ALA TYR GLN LYS LEU ILE SER GLU VAL LYS SEQRES 23 B 359 VAL GLN VAL GLU ASN GLN VAL GLN GLY ILE TYR PHE ASN SEQRES 24 B 359 ILE THR ALA ILE CYS PRO ASP GLY SER ARG LYS PRO GLY SEQRES 25 B 359 MET GLU GLY CYS ARG ASN VAL THR SER ASN ASP GLU VAL SEQRES 26 B 359 LEU PHE ASN VAL THR VAL THR MET LYS LYS CYS ASP ASN SEQRES 27 B 359 TYR ALA ILE ILE LYS PRO ILE GLY PHE ASN GLU THR ALA SEQRES 28 B 359 LYS ILE HIS ILE HIS ARG ASN CYS SEQRES 1 C 75 THR LYS CYS VAL VAL ARG PHE ASN PHE ARG GLY ASP MET SEQRES 2 C 75 ALA VAL TYR ALA LEU LYS ALA VAL LYS ASP HIS LEU LYS SEQRES 3 C 75 LYS GLU GLY PRO HIS TRP ASN ILE THR THR HIS ASN ASP SEQRES 4 C 75 ASP GLU VAL TYR LEU VAL VAL ARG GLY ILE HIS GLU SER SEQRES 5 C 75 ASP ALA LYS ARG ILE ALA LYS TRP VAL GLU SER THR ILE SEQRES 6 C 75 PRO GLY ILE SER VAL GLU THR GLN CYS ASP HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET MAN D 4 11 HET MAN D 5 11 HET MAN D 6 11 HET NAG E 1 14 HET NAG E 2 14 HET NAG F 1 14 HET NAG F 2 14 HET NAG G 1 14 HET NAG G 2 14 HET CA A 501 1 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET NAG A 505 14 HET CA B2001 1 HET MG B2002 1 HET NAG B2003 14 HET NAG B2004 14 HET NAG B2005 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM CA CALCIUM ION HETNAM MG MAGNESIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 4 NAG 12(C8 H15 N O6) FORMUL 4 BMA C6 H12 O6 FORMUL 4 MAN 3(C6 H12 O6) FORMUL 8 CA 5(CA 2+) FORMUL 14 MG MG 2+ HELIX 1 AA1 GLY A 175 GLN A 180 1 6 HELIX 2 AA2 VAL A 188 LYS A 194 1 7 HELIX 3 AA3 GLN A 214 ASP A 218 5 5 HELIX 4 AA4 ARG A 245 LEU A 250 1 6 HELIX 5 AA5 GLY A 366 LYS A 370 5 5 HELIX 6 AA6 PHE A 428 VAL A 430 5 3 HELIX 7 AA7 SER B 114 HIS B 118 5 5 HELIX 8 AA8 ASN B 120 VAL B 127 5 8 HELIX 9 AA9 GLY B 128 MET B 135 1 8 HELIX 10 AB1 CYS B 169 ASN B 173 5 5 HELIX 11 AB2 ASN B 191 ARG B 201 1 11 HELIX 12 AB3 GLY B 213 CYS B 224 1 12 HELIX 13 AB4 CYS B 224 GLY B 229 1 6 HELIX 14 AB5 LEU B 250 GLY B 256 5 7 HELIX 15 AB6 SER B 282 ASN B 293 1 12 HELIX 16 AB7 GLN B 305 ASP B 311 1 7 HELIX 17 AB8 LEU B 312 LEU B 316 5 5 HELIX 18 AB9 ASN B 330 ILE B 343 1 14 HELIX 19 AC1 MET C 13 GLY C 29 1 17 HELIX 20 AC2 GLU C 51 SER C 63 1 13 SHEET 1 AA1 4 ALA A 9 SER A 12 0 SHEET 2 AA1 4 ARG A 432 TYR A 436 -1 O ALA A 433 N TYR A 11 SHEET 3 AA1 4 ASP A 422 ALA A 427 -1 N LEU A 423 O TYR A 436 SHEET 4 AA1 4 MET A 409 THR A 413 -1 N THR A 413 O ASP A 422 SHEET 1 AA2 4 VAL A 23 PHE A 26 0 SHEET 2 AA2 4 PHE A 35 ALA A 40 -1 O PHE A 35 N PHE A 26 SHEET 3 AA2 4 GLN A 55 CYS A 59 -1 O CYS A 59 N LEU A 36 SHEET 4 AA2 4 CYS A 67 PRO A 69 -1 O GLN A 68 N LYS A 58 SHEET 1 AA3 2 ASP A 79 ALA A 81 0 SHEET 2 AA3 2 ASP A 84 PRO A 85 -1 O ASP A 84 N TYR A 80 SHEET 1 AA4 2 GLU A 87 PHE A 88 0 SHEET 2 AA4 2 HIS A 113 TRP A 114 -1 O HIS A 113 N PHE A 88 SHEET 1 AA5 4 SER A 97 LYS A 101 0 SHEET 2 AA5 4 LYS A 104 ALA A 109 -1 O LEU A 106 N ARG A 99 SHEET 3 AA5 4 THR A 127 ASP A 132 -1 O PHE A 129 N ALA A 107 SHEET 4 AA5 4 LYS A 135 TYR A 139 -1 O TYR A 139 N CYS A 128 SHEET 1 AA6 4 SER A 160 THR A 164 0 SHEET 2 AA6 4 ARG A 168 GLY A 173 -1 O GLY A 172 N SER A 160 SHEET 3 AA6 4 GLN A 182 GLN A 187 -1 O ILE A 184 N LEU A 171 SHEET 4 AA6 4 LEU A 208 ALA A 209 -1 O LEU A 208 N SER A 185 SHEET 1 AA7 4 VAL A 226 GLY A 229 0 SHEET 2 AA7 4 ASP A 238 VAL A 243 -1 O VAL A 240 N ALA A 227 SHEET 3 AA7 4 MET A 252 TYR A 256 -1 O MET A 252 N VAL A 243 SHEET 4 AA7 4 SER A 263 THR A 268 -1 O LEU A 264 N ILE A 255 SHEET 1 AA8 4 VAL A 280 THR A 283 0 SHEET 2 AA8 4 ASP A 292 ALA A 297 -1 O PHE A 294 N ALA A 281 SHEET 3 AA8 4 GLN A 314 GLN A 320 -1 O SER A 316 N ILE A 295 SHEET 4 AA8 4 PHE A 326 ASN A 332 -1 O LEU A 331 N VAL A 315 SHEET 1 AA9 2 MET A 301 ARG A 303 0 SHEET 2 AA9 2 LEU A 309 GLU A 311 -1 O GLN A 310 N ASP A 302 SHEET 1 AB1 4 ILE A 344 GLY A 348 0 SHEET 2 AB1 4 ASP A 357 ALA A 362 -1 O ASP A 357 N GLY A 348 SHEET 3 AB1 4 ILE A 372 PHE A 376 -1 O ILE A 372 N ALA A 362 SHEET 4 AB1 4 GLN A 389 GLU A 392 -1 O LEU A 391 N VAL A 373 SHEET 1 AB2 5 HIS B 63 ILE B 65 0 SHEET 2 AB2 5 GLU B 80 LEU B 85 -1 O SER B 82 N ILE B 65 SHEET 3 AB2 5 ALA B 417 ARG B 423 1 O HIS B 422 N ILE B 83 SHEET 4 AB2 5 TYR B 405 PRO B 410 -1 N ALA B 406 O ILE B 419 SHEET 5 AB2 5 VAL B 348 ASN B 352 -1 N GLU B 351 O ILE B 407 SHEET 1 AB3 5 VAL B 76 THR B 77 0 SHEET 2 AB3 5 GLU B 90 VAL B 97 -1 O LYS B 96 N THR B 77 SHEET 3 AB3 5 VAL B 386 MET B 394 -1 O VAL B 392 N ALA B 91 SHEET 4 AB3 5 ILE B 357 ILE B 364 -1 N ILE B 364 O LEU B 387 SHEET 5 AB3 5 ARG B 370 PRO B 372 -1 O LYS B 371 N ALA B 363 SHEET 1 AB4 6 TYR B 182 THR B 189 0 SHEET 2 AB4 6 SER B 139 TYR B 149 -1 N PHE B 146 O LEU B 186 SHEET 3 AB4 6 TYR B 103 ASP B 112 1 N VAL B 105 O ASP B 141 SHEET 4 AB4 6 LYS B 235 THR B 242 1 O LEU B 237 N ASP B 106 SHEET 5 AB4 6 ILE B 295 VAL B 301 1 O ASN B 296 N LEU B 238 SHEET 6 AB4 6 THR B 319 GLU B 323 1 O GLY B 322 N PHE B 299 SHEET 1 AB5 4 ASN C 33 HIS C 37 0 SHEET 2 AB5 4 VAL C 42 ILE C 49 -1 O VAL C 45 N THR C 35 SHEET 3 AB5 4 CYS C 3 PHE C 9 -1 N PHE C 7 O LEU C 44 SHEET 4 AB5 4 SER C 69 CYS C 74 -1 O SER C 69 N ASN C 8 SSBOND 1 CYS A 59 CYS A 67 1555 1555 2.04 SSBOND 2 CYS A 108 CYS A 128 1555 1555 2.03 SSBOND 3 CYS A 142 CYS A 155 1555 1555 2.04 SSBOND 4 CYS A 401 CYS B 259 1555 1555 2.03 SSBOND 5 CYS B 169 CYS B 176 1555 1555 2.03 SSBOND 6 CYS B 224 CYS B 265 1555 1555 2.02 SSBOND 7 CYS B 365 CYS B 377 1555 1555 2.09 SSBOND 8 CYS B 397 CYS B 425 1555 1555 2.02 SSBOND 9 CYS C 3 CYS C 74 1555 1555 2.04 LINK ND2 ASN A 44 C1 NAG E 1 1555 1555 1.50 LINK ND2 ASN A 260 C1 NAG A 505 1555 1555 1.50 LINK ND2 ASN A 266 C1 NAG D 1 1555 1555 1.49 LINK ND2 ASN B 191 C1 NAG B2003 1555 1555 1.43 LINK ND2 ASN B 360 C1 NAG B2004 1555 1555 1.51 LINK ND2 ASN B 379 C1 NAG B2005 1555 1555 1.43 LINK ND2 ASN B 389 C1 NAG F 1 1555 1555 1.50 LINK ND2 ASN B 414 C1 NAG G 1 1555 1555 1.54 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.50 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.51 LINK O3 BMA D 3 C1 MAN D 4 1555 1555 1.52 LINK O6 BMA D 3 C1 MAN D 6 1555 1555 1.50 LINK O2 MAN D 4 C1 MAN D 5 1555 1555 1.52 LINK O4 NAG E 1 C1 NAG E 2 1555 1555 1.50 LINK O4 NAG F 1 C1 NAG F 2 1555 1555 1.50 LINK O4 NAG G 1 C1 NAG G 2 1555 1555 1.50 LINK OD1 ASN A 232 CA CA A 504 1555 1555 2.41 LINK OD1 ASP A 234 CA CA A 504 1555 1555 2.18 LINK OD2 ASP A 234 CA CA A 504 1555 1555 2.31 LINK O ILE A 236 CA CA A 504 1555 1555 2.25 LINK OD1 ASP A 238 CA CA A 504 1555 1555 2.22 LINK OD2 ASP A 238 CA CA A 504 1555 1555 2.26 LINK OD1 ASN A 286 CA CA A 501 1555 1555 2.48 LINK OD1 ASP A 288 CA CA A 501 1555 1555 2.19 LINK OD2 ASP A 288 CA CA A 501 1555 1555 2.26 LINK O TYR A 290 CA CA A 501 1555 1555 2.26 LINK OD1 ASP A 292 CA CA A 501 1555 1555 2.25 LINK OD2 ASP A 292 CA CA A 501 1555 1555 2.21 LINK OD1 ASP A 349 CA CA A 502 1555 1555 2.26 LINK OD1 ASP A 351 CA CA A 502 1555 1555 2.13 LINK OD1 ASP A 353 CA CA A 502 1555 1555 2.12 LINK O PHE A 355 CA CA A 502 1555 1555 2.23 LINK OD1 ASP A 357 CA CA A 502 1555 1555 2.82 LINK OD2 ASP A 357 CA CA A 502 1555 1555 2.14 LINK OD1 ASP A 414 CA CA A 503 1555 1555 2.10 LINK OD1 ASP A 416 CA CA A 503 1555 1555 2.09 LINK OD1 ASN A 418 CA CA A 503 1555 1555 2.74 LINK O TYR A 420 CA CA A 503 1555 1555 2.22 LINK OD1 ASP A 422 CA CA A 503 1555 1555 2.16 LINK OD2 ASP A 422 CA CA A 503 1555 1555 2.86 LINK OG SER B 114 MG MG B2002 1555 1555 2.03 LINK OG SER B 116 MG MG B2002 1555 1555 2.40 LINK OD2 ASP B 151 CA CA B2001 1555 1555 2.16 LINK OD1 ASN B 207 CA CA B2001 1555 1555 2.48 LINK O ASP B 209 CA CA B2001 1555 1555 2.49 LINK OD1 ASP B 209 CA CA B2001 1555 1555 2.11 LINK O PRO B 211 CA CA B2001 1555 1555 2.21 LINK OE1 GLU B 212 CA CA B2001 1555 1555 3.08 LINK OE2 GLU B 212 MG MG B2002 1555 1555 1.81 LINK MG MG B2002 OD1 ASP C 12 1555 1555 1.80 CISPEP 1 THR B 77 PRO B 78 0 -4.91 CISPEP 2 SER B 155 PRO B 156 0 -1.27 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000