HEADER ISOMERASE 02-JUL-23 8TDE TITLE STRUCTURE OF GLUCOSE BOUND BACTEROIDES THETAIOTAOMICRON 3-KETO-2- TITLE 2 HYDROXY-GLUCAL-HYDRATASE BT2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE SECRETED GLYCOSYL HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES THETAIOTAOMICRON; SOURCE 3 ORGANISM_TAXID: 818; SOURCE 4 GENE: BT_2157; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDRATASE, GH16-LIKE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.LAZARSKI,L.J.WORRALL,N.C.J.STRYNADKA REVDAT 3 17-JUL-24 8TDE 1 JRNL REVDAT 2 03-JUL-24 8TDE 1 JRNL REVDAT 1 12-JUN-24 8TDE 0 JRNL AUTH S.A.NASSERI,A.C.LAZARSKI,I.L.LEMMER,C.Y.ZHANG,E.BRENCHER, JRNL AUTH 2 H.M.CHEN,L.SIM,D.PANWAR,L.BETSCHART,L.J.WORRALL,H.BRUMER, JRNL AUTH 3 N.C.J.STRYNADKA,S.G.WITHERS JRNL TITL AN ALTERNATIVE BROAD-SPECIFICITY PATHWAY FOR GLYCAN JRNL TITL 2 BREAKDOWN IN BACTERIA. JRNL REF NATURE V. 631 199 2024 JRNL REFN ESSN 1476-4687 JRNL PMID 38898276 JRNL DOI 10.1038/S41586-024-07574-Y REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0425 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 56120 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 REFLECTION IN BIN (WORKING SET) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE SET COUNT : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4058 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 404 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : NULL REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TDE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275687. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-23 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08B1-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1807 REMARK 200 MONOCHROMATOR : 1.18 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56186 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 43.720 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.89 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.36500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3OSD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M POTASSIUM CITRATE 22% PEG 3350, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.51850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.89000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.58550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.89000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.51850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.58550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 HIS A 17 REMARK 465 HIS A 18 REMARK 465 HIS A 19 REMARK 465 SER A 20 REMARK 465 SER A 21 REMARK 465 GLY A 22 REMARK 465 LEU A 23 REMARK 465 VAL A 24 REMARK 465 PRO A 25 REMARK 465 ARG A 26 REMARK 465 GLY A 27 REMARK 465 SER A 28 REMARK 465 ALA A 29 REMARK 465 GLN A 30 REMARK 465 GLU A 31 REMARK 465 GLU A 32 REMARK 465 GLN A 33 REMARK 465 SER A 34 REMARK 465 MET B 10 REMARK 465 GLY B 11 REMARK 465 SER B 12 REMARK 465 SER B 13 REMARK 465 HIS B 14 REMARK 465 HIS B 15 REMARK 465 HIS B 16 REMARK 465 HIS B 17 REMARK 465 HIS B 18 REMARK 465 HIS B 19 REMARK 465 SER B 20 REMARK 465 SER B 21 REMARK 465 GLY B 22 REMARK 465 LEU B 23 REMARK 465 VAL B 24 REMARK 465 PRO B 25 REMARK 465 ARG B 26 REMARK 465 GLY B 27 REMARK 465 SER B 28 REMARK 465 ALA B 29 REMARK 465 GLN B 30 REMARK 465 GLU B 31 REMARK 465 GLU B 32 REMARK 465 GLN B 33 REMARK 465 SER B 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 429 O HOH A 515 1.92 REMARK 500 O HOH A 533 O HOH A 535 2.02 REMARK 500 O HOH A 459 O HOH B 466 2.05 REMARK 500 O HOH A 567 O HOH A 568 2.08 REMARK 500 OD1 ASP A 108 O HOH A 401 2.10 REMARK 500 O HOH B 401 O HOH B 462 2.12 REMARK 500 O HOH A 432 O HOH A 525 2.14 REMARK 500 OE1 GLN A 105 O HOH A 402 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 581 O HOH B 567 4555 2.03 REMARK 500 O HOH A 423 O HOH B 460 4555 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 267 CD GLU A 267 OE1 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 51 CG - SD - CE ANGL. DEV. = 12.4 DEGREES REMARK 500 MET A 125 CG - SD - CE ANGL. DEV. = -12.0 DEGREES REMARK 500 MET A 192 CG - SD - CE ANGL. DEV. = -15.3 DEGREES REMARK 500 LYS A 235 N - CA - CB ANGL. DEV. = 11.2 DEGREES REMARK 500 ARG A 285 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG A 285 NE - CZ - NH2 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 82 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 VAL B 129 CB - CA - C ANGL. DEV. = -16.3 DEGREES REMARK 500 ASP B 153 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 MET B 212 CG - SD - CE ANGL. DEV. = 11.3 DEGREES REMARK 500 HIS B 220 CB - CG - CD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG B 285 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 285 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 70 -37.08 -134.77 REMARK 500 ALA A 115 46.28 -87.84 REMARK 500 LYS A 119 -70.09 -122.95 REMARK 500 SER A 135 -155.20 -154.98 REMARK 500 LEU A 178 -163.69 -102.54 REMARK 500 MET A 192 -50.81 -128.77 REMARK 500 ASN A 260 50.54 -112.19 REMARK 500 LYS B 70 -32.79 -133.49 REMARK 500 ALA B 115 49.37 -88.97 REMARK 500 LYS B 119 -70.53 -118.00 REMARK 500 SER B 135 -145.64 -149.67 REMARK 500 MET B 192 -54.17 -134.08 REMARK 500 ASN B 260 57.60 -109.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 285 0.19 SIDE CHAIN REMARK 500 ARG B 285 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 596 DISTANCE = 6.86 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 302 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 134 OD1 REMARK 620 2 SER A 135 O 79.9 REMARK 620 3 GLU A 164 OE2 169.1 98.5 REMARK 620 4 GLN A 166 OE1 99.5 72.4 90.2 REMARK 620 5 GLN A 273 OE1 87.1 80.5 82.0 150.4 REMARK 620 6 GLC A 301 O3 98.9 172.1 84.2 100.3 107.3 REMARK 620 7 GLC A 301 O4 129.1 134.2 45.7 123.8 68.8 52.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 134 OD1 REMARK 620 2 SER B 135 O 85.2 REMARK 620 3 GLU B 164 OE2 163.8 81.2 REMARK 620 4 GLN B 166 OE1 96.4 78.8 89.5 REMARK 620 5 GLN B 273 OE1 90.9 79.3 78.0 156.2 REMARK 620 6 HOH B 510 O 112.1 161.4 80.6 104.8 93.1 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 8TCD RELATED DB: PDB REMARK 900 LYASE PROTEIN IN HOMOLOGOUS PATHWAY REMARK 900 RELATED ID: 8TCR RELATED DB: PDB REMARK 900 LYASE PROTEIN IN HOMOLOGOUS PATHWAY BOUND TO GLUCOSE REMARK 900 RELATED ID: 8TCS RELATED DB: PDB REMARK 900 LYASE PROTEIN IN HOMOLOGOUS PATHWAY BOUND TO TREHALOSE REMARK 900 RELATED ID: 8TCT RELATED DB: PDB REMARK 900 LYASE PROTEIN IN PATHWAY BOUND TO 3K-GLCH REMARK 900 RELATED ID: 8TDA RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITHOUT SUBSTRATE OR INHIBITOR BOUND REMARK 900 RELATED ID: 8TDF RELATED DB: PDB REMARK 900 DEHYDROGENASE PROTEIN IN HOMOLOGOUS PATHWAY REMARK 900 RELATED ID: 8TDH RELATED DB: PDB REMARK 900 DEHYDROGENASE PROTEIN IN HOMOLOGOUS PATHWAY BOUND TO TREHALOSE REMARK 900 RELATED ID: 8TDI RELATED DB: PDB REMARK 900 DEHYDROGENASE PROTEIN IN HOMOLOGOUS PATHWAY REMARK 900 RELATED ID: 8V31 RELATED DB: PDB REMARK 900 HYDRATASE PROTEIN IN HOMOLOGOUS PATHWAY DBREF 8TDE A 27 290 UNP Q8A5T1 Q8A5T1_BACTN 27 290 DBREF 8TDE B 27 290 UNP Q8A5T1 Q8A5T1_BACTN 27 290 SEQADV 8TDE MET A 10 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE GLY A 11 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE SER A 12 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE SER A 13 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE HIS A 14 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE HIS A 15 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE HIS A 16 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE HIS A 17 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE HIS A 18 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE HIS A 19 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE SER A 20 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE SER A 21 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE GLY A 22 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE LEU A 23 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE VAL A 24 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE PRO A 25 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE ARG A 26 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE MET B 10 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE GLY B 11 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE SER B 12 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE SER B 13 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE HIS B 14 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE HIS B 15 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE HIS B 16 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE HIS B 17 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE HIS B 18 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE HIS B 19 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE SER B 20 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE SER B 21 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE GLY B 22 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE LEU B 23 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE VAL B 24 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE PRO B 25 UNP Q8A5T1 EXPRESSION TAG SEQADV 8TDE ARG B 26 UNP Q8A5T1 EXPRESSION TAG SEQRES 1 A 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 281 LEU VAL PRO ARG GLY SER ALA GLN GLU GLU GLN SER ALA SEQRES 3 A 281 ASN GLU VAL ALA VAL SER TYR SER LYS SER LEU LYS ALA SEQRES 4 A 281 ALA GLU MET ASP SER LEU GLN LEU PRO VAL ASP ALA ASP SEQRES 5 A 281 GLY TYR ILE THR ILE PHE ASP GLY LYS THR PHE ASN GLY SEQRES 6 A 281 TRP ARG GLY TYR GLY LYS ASP ARG VAL PRO SER LYS TRP SEQRES 7 A 281 THR ILE GLU ASP GLY CYS ILE LYS PHE ASN GLY SER GLY SEQRES 8 A 281 GLY GLY GLU ALA GLN ASP GLY ASP GLY GLY ASP LEU ILE SEQRES 9 A 281 PHE ALA HIS LYS PHE LYS ASN PHE GLU LEU GLU MET GLU SEQRES 10 A 281 TRP LYS VAL SER LYS GLY GLY ASN SER GLY ILE PHE TYR SEQRES 11 A 281 LEU ALA GLN GLU VAL THR SER LYS ASP LYS ASP GLY ASN SEQRES 12 A 281 ASP VAL LEU GLU PRO ILE TYR ILE SER ALA PRO GLU TYR SEQRES 13 A 281 GLN VAL LEU ASP ASN ASP ASN HIS PRO ASP ALA LYS LEU SEQRES 14 A 281 GLY LYS ASP ASN ASN ARG GLN SER ALA SER LEU TYR ASP SEQRES 15 A 281 MET ILE PRO ALA VAL PRO GLN ASN ALA LYS PRO PHE GLY SEQRES 16 A 281 GLU TRP ASN LYS ALA LYS ILE MET VAL TYR LYS GLY THR SEQRES 17 A 281 VAL VAL HIS GLY GLN ASN ASP GLU ASN VAL LEU GLU TYR SEQRES 18 A 281 HIS LEU TRP THR LYS GLN TRP THR ASP LEU LEU GLN ALA SEQRES 19 A 281 SER LYS PHE SER GLN ASP LYS TRP PRO LEU ALA PHE GLU SEQRES 20 A 281 LEU LEU ASN ASN CYS GLY GLY GLU ASN HIS GLU GLY PHE SEQRES 21 A 281 ILE GLY MET GLN ASP HIS GLY ASP ASP VAL TRP PHE ARG SEQRES 22 A 281 ASN ILE ARG VAL LYS VAL LEU ASP SEQRES 1 B 281 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 281 LEU VAL PRO ARG GLY SER ALA GLN GLU GLU GLN SER ALA SEQRES 3 B 281 ASN GLU VAL ALA VAL SER TYR SER LYS SER LEU LYS ALA SEQRES 4 B 281 ALA GLU MET ASP SER LEU GLN LEU PRO VAL ASP ALA ASP SEQRES 5 B 281 GLY TYR ILE THR ILE PHE ASP GLY LYS THR PHE ASN GLY SEQRES 6 B 281 TRP ARG GLY TYR GLY LYS ASP ARG VAL PRO SER LYS TRP SEQRES 7 B 281 THR ILE GLU ASP GLY CYS ILE LYS PHE ASN GLY SER GLY SEQRES 8 B 281 GLY GLY GLU ALA GLN ASP GLY ASP GLY GLY ASP LEU ILE SEQRES 9 B 281 PHE ALA HIS LYS PHE LYS ASN PHE GLU LEU GLU MET GLU SEQRES 10 B 281 TRP LYS VAL SER LYS GLY GLY ASN SER GLY ILE PHE TYR SEQRES 11 B 281 LEU ALA GLN GLU VAL THR SER LYS ASP LYS ASP GLY ASN SEQRES 12 B 281 ASP VAL LEU GLU PRO ILE TYR ILE SER ALA PRO GLU TYR SEQRES 13 B 281 GLN VAL LEU ASP ASN ASP ASN HIS PRO ASP ALA LYS LEU SEQRES 14 B 281 GLY LYS ASP ASN ASN ARG GLN SER ALA SER LEU TYR ASP SEQRES 15 B 281 MET ILE PRO ALA VAL PRO GLN ASN ALA LYS PRO PHE GLY SEQRES 16 B 281 GLU TRP ASN LYS ALA LYS ILE MET VAL TYR LYS GLY THR SEQRES 17 B 281 VAL VAL HIS GLY GLN ASN ASP GLU ASN VAL LEU GLU TYR SEQRES 18 B 281 HIS LEU TRP THR LYS GLN TRP THR ASP LEU LEU GLN ALA SEQRES 19 B 281 SER LYS PHE SER GLN ASP LYS TRP PRO LEU ALA PHE GLU SEQRES 20 B 281 LEU LEU ASN ASN CYS GLY GLY GLU ASN HIS GLU GLY PHE SEQRES 21 B 281 ILE GLY MET GLN ASP HIS GLY ASP ASP VAL TRP PHE ARG SEQRES 22 B 281 ASN ILE ARG VAL LYS VAL LEU ASP HET GLC A 301 12 HET K A 302 1 HET K B 301 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM K POTASSIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC C6 H12 O6 FORMUL 4 K 2(K 1+) FORMUL 6 HOH *404(H2 O) HELIX 1 AA1 GLY A 101 GLN A 105 5 5 HELIX 2 AA2 PRO A 157 SER A 161 5 5 HELIX 3 AA3 HIS A 173 LEU A 178 5 6 HELIX 4 AA4 THR A 234 ALA A 243 1 10 HELIX 5 AA5 TRP A 251 ASN A 260 1 10 HELIX 6 AA6 GLY A 262 HIS A 266 5 5 HELIX 7 AA7 GLY B 101 GLN B 105 5 5 HELIX 8 AA8 PRO B 157 SER B 161 5 5 HELIX 9 AA9 HIS B 173 LEU B 178 5 6 HELIX 10 AB1 THR B 234 ALA B 243 1 10 HELIX 11 AB2 TRP B 251 ASN B 260 1 10 HELIX 12 AB3 GLY B 262 HIS B 266 5 5 SHEET 1 AA1 2 GLU A 37 TYR A 42 0 SHEET 2 AA1 2 ASP A 52 PRO A 57 -1 O LEU A 54 N VAL A 40 SHEET 1 AA2 4 TYR A 63 THR A 65 0 SHEET 2 AA2 4 VAL A 279 VAL A 288 -1 O VAL A 286 N ILE A 64 SHEET 3 AA2 4 CYS A 93 PHE A 96 -1 N ILE A 94 O PHE A 281 SHEET 4 AA2 4 TRP A 87 GLU A 90 -1 N THR A 88 O LYS A 95 SHEET 1 AA3 6 TYR A 63 THR A 65 0 SHEET 2 AA3 6 VAL A 279 VAL A 288 -1 O VAL A 286 N ILE A 64 SHEET 3 AA3 6 PHE A 121 VAL A 129 -1 N GLU A 126 O ARG A 282 SHEET 4 AA3 6 ASN A 207 TYR A 214 -1 O ALA A 209 N MET A 125 SHEET 5 AA3 6 THR A 217 GLN A 222 -1 O GLY A 221 N LYS A 210 SHEET 6 AA3 6 GLU A 225 HIS A 231 -1 O VAL A 227 N HIS A 220 SHEET 1 AA4 5 TRP A 75 GLY A 77 0 SHEET 2 AA4 5 LEU A 112 PHE A 114 -1 O ILE A 113 N ARG A 76 SHEET 3 AA4 5 PHE A 269 MET A 272 -1 O MET A 272 N LEU A 112 SHEET 4 AA4 5 ASN A 134 ALA A 141 -1 N ALA A 141 O PHE A 269 SHEET 5 AA4 5 GLU A 164 LEU A 168 -1 O TYR A 165 N ILE A 137 SHEET 1 AA5 2 THR A 145 LYS A 147 0 SHEET 2 AA5 2 ASP A 153 LEU A 155 -1 O VAL A 154 N SER A 146 SHEET 1 AA6 2 GLU B 37 TYR B 42 0 SHEET 2 AA6 2 ASP B 52 PRO B 57 -1 O LEU B 54 N VAL B 40 SHEET 1 AA7 4 TYR B 63 THR B 65 0 SHEET 2 AA7 4 VAL B 279 VAL B 288 -1 O VAL B 286 N ILE B 64 SHEET 3 AA7 4 CYS B 93 PHE B 96 -1 N ILE B 94 O PHE B 281 SHEET 4 AA7 4 TRP B 87 GLU B 90 -1 N THR B 88 O LYS B 95 SHEET 1 AA8 6 TYR B 63 THR B 65 0 SHEET 2 AA8 6 VAL B 279 VAL B 288 -1 O VAL B 286 N ILE B 64 SHEET 3 AA8 6 PHE B 121 VAL B 129 -1 N GLU B 124 O ARG B 285 SHEET 4 AA8 6 ASN B 207 TYR B 214 -1 O ASN B 207 N TRP B 127 SHEET 5 AA8 6 THR B 217 GLN B 222 -1 O THR B 217 N TYR B 214 SHEET 6 AA8 6 GLU B 225 HIS B 231 -1 O TYR B 230 N VAL B 218 SHEET 1 AA9 5 TRP B 75 GLY B 77 0 SHEET 2 AA9 5 LEU B 112 PHE B 118 -1 O ILE B 113 N ARG B 76 SHEET 3 AA9 5 GLY B 268 MET B 272 -1 O GLY B 268 N PHE B 118 SHEET 4 AA9 5 ASN B 134 ALA B 141 -1 N ALA B 141 O PHE B 269 SHEET 5 AA9 5 GLU B 164 LEU B 168 -1 O TYR B 165 N ILE B 137 SHEET 1 AB1 2 THR B 145 LYS B 147 0 SHEET 2 AB1 2 ASP B 153 LEU B 155 -1 O VAL B 154 N SER B 146 LINK OD1 ASN A 134 K K A 302 1555 1555 2.50 LINK O SER A 135 K K A 302 1555 1555 2.66 LINK OE2 GLU A 164 K K A 302 1555 1555 2.55 LINK OE1 GLN A 166 K K A 302 1555 1555 2.57 LINK OE1 GLN A 273 K K A 302 1555 1555 2.66 LINK O3 GLC A 301 K K A 302 1555 1555 2.84 LINK O4 GLC A 301 K K A 302 1555 1555 3.26 LINK OD1 ASN B 134 K K B 301 1555 1555 2.41 LINK O SER B 135 K K B 301 1555 1555 2.44 LINK OE2 GLU B 164 K K B 301 1555 1555 2.54 LINK OE1 GLN B 166 K K B 301 1555 1555 2.45 LINK OE1 GLN B 273 K K B 301 1555 1555 2.37 LINK K K B 301 O HOH B 510 1555 1555 2.70 CISPEP 1 VAL A 196 PRO A 197 0 7.75 CISPEP 2 VAL B 196 PRO B 197 0 0.69 CRYST1 77.037 81.171 103.780 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012981 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012320 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009636 0.00000