HEADER IMMUNE SYSTEM 05-JUL-23 8TDX TITLE TRNM-B.01 IN COMPLEX WITH HIV ENV FUSION PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRNM-B.01 FAB HEAVY CHAIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: TRNM-B.01 FAB LIGHT CHAIN; COMPND 7 CHAIN: C, D; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: ENV FUSION PEPTIDE; COMPND 11 CHAIN: F, E; COMPND 12 SYNONYM: TRANSMEMBRANE PROTEIN GP41,TM,GLYCOPROTEIN 41,GP41; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 3 ORGANISM_COMMON: RHESUS MONKEY; SOURCE 4 ORGANISM_TAXID: 9544; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MACACA MULATTA; SOURCE 10 ORGANISM_COMMON: RHESUS MONKEY; SOURCE 11 ORGANISM_TAXID: 9544; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 18 ORGANISM_TAXID: 11676 KEYWDS HIV-1, FUSION PEPTIDE, ANTIBODY, FAB, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.S.OLIA,P.D.KWONG REVDAT 1 10-JUL-24 8TDX 0 JRNL AUTH H.WANG,A.S.OLIA,P.D.KWONG JRNL TITL BROAD AND POTENT HIV-1 NEUTRALIZATION IN FUSION JRNL TITL 2 PEPTIDE-PRIMED SHIV-BOOSTED MACAQUES JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.20.1_4487 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 57289 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.490 REMARK 3 FREE R VALUE TEST SET COUNT : 1997 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.4600 - 5.0400 0.98 4180 152 0.1960 0.2169 REMARK 3 2 5.0300 - 4.0000 1.00 4086 145 0.1567 0.1797 REMARK 3 3 4.0000 - 3.4900 1.00 4018 150 0.1841 0.2081 REMARK 3 4 3.4900 - 3.1700 0.99 3993 140 0.2018 0.2301 REMARK 3 5 3.1700 - 2.9500 0.99 4000 142 0.2193 0.2991 REMARK 3 6 2.9500 - 2.7700 1.00 3965 148 0.2208 0.2742 REMARK 3 7 2.7700 - 2.6300 1.00 3986 143 0.2316 0.2983 REMARK 3 8 2.6300 - 2.5200 0.99 3959 150 0.2336 0.2594 REMARK 3 9 2.5200 - 2.4200 0.99 3952 137 0.2338 0.2802 REMARK 3 10 2.4200 - 2.3400 0.99 3902 142 0.2290 0.2460 REMARK 3 11 2.3400 - 2.2600 0.99 3922 133 0.2300 0.2468 REMARK 3 12 2.2600 - 2.2000 0.99 3938 144 0.2394 0.2713 REMARK 3 13 2.2000 - 2.1400 0.99 3928 144 0.2380 0.3175 REMARK 3 14 2.1400 - 2.0900 0.88 3463 127 0.2354 0.2679 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.185 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.389 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 6892 REMARK 3 ANGLE : 0.733 9384 REMARK 3 CHIRALITY : 0.049 1084 REMARK 3 PLANARITY : 0.005 1190 REMARK 3 DIHEDRAL : 6.089 946 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 8TDX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000274209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-22 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 24-ID-E REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57876 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.62400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE 21% PEG 8K 0.1M REMARK 280 SODIUM PHOSPHATE / CITRIC ACID PH 4.2, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.23200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.55400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.46300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.55400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.23200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.46300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 HIS A 27 REMARK 465 ALA A 28 REMARK 465 SER A 29 REMARK 465 ALA D 212 REMARK 465 ALA D 213 REMARK 465 GLN B 1 REMARK 465 HIS B 27 REMARK 465 ALA B 28 REMARK 465 SER B 29 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 VAL A 31 CG1 CG2 REMARK 470 ASN A 108 CG OD1 ND2 REMARK 470 ARG B 30 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 31 CG1 CG2 REMARK 470 ASN B 108 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 321 O HOH D 430 1.82 REMARK 500 O HOH A 420 O HOH A 483 1.84 REMARK 500 O HOH C 449 O HOH C 492 1.87 REMARK 500 O HOH A 361 O HOH A 410 1.91 REMARK 500 NH2 ARG B 140 O HOH B 301 1.94 REMARK 500 N ASP C 1 O HOH C 301 1.96 REMARK 500 OD1 ASP B 155 O HOH B 302 1.99 REMARK 500 O CYS A 227 O HOH A 301 2.01 REMARK 500 O GLY D 157 O HOH D 301 2.01 REMARK 500 O HOH B 314 O HOH B 419 2.02 REMARK 500 O HOH C 389 O HOH C 488 2.03 REMARK 500 O HOH A 397 O HOH C 484 2.03 REMARK 500 NZ LYS C 155 O HOH C 302 2.04 REMARK 500 O HOH C 461 O HOH C 478 2.05 REMARK 500 O HOH A 417 O HOH A 466 2.05 REMARK 500 O HOH A 450 O HOH D 370 2.05 REMARK 500 O HOH D 419 O HOH D 448 2.06 REMARK 500 O HOH C 488 O HOH C 509 2.07 REMARK 500 O HOH B 313 O HOH B 395 2.11 REMARK 500 O HOH A 318 O HOH A 389 2.11 REMARK 500 O HOH D 323 O HOH D 422 2.13 REMARK 500 O HOH A 327 O HOH A 448 2.13 REMARK 500 O HOH A 335 O HOH A 462 2.13 REMARK 500 NZ LYS D 190 O HOH D 302 2.14 REMARK 500 O GLU B 223 O HOH B 303 2.14 REMARK 500 O HOH B 361 O HOH B 415 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 489 O HOH B 462 3554 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 15 -15.02 75.12 REMARK 500 LYS A 67 -49.96 -20.75 REMARK 500 PHE A 111 119.34 57.12 REMARK 500 ASN C 30 -111.09 61.22 REMARK 500 ALA C 51 -40.78 71.42 REMARK 500 ALA C 84 -171.49 -174.90 REMARK 500 ASN D 30 -122.32 59.68 REMARK 500 ALA D 51 -37.65 69.66 REMARK 500 SER D 52 -3.07 -140.26 REMARK 500 ALA D 84 -179.73 -173.01 REMARK 500 GLU D 143 111.98 -11.16 REMARK 500 ASN D 158 -57.51 69.16 REMARK 500 SER B 15 -16.69 80.77 REMARK 500 TYR B 102 141.12 -173.05 REMARK 500 PHE B 111 121.07 55.10 REMARK 500 SER B 141 24.95 -79.59 REMARK 500 THR B 171 -32.82 -131.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU B 66 LYS B 67 -149.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 482 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH B 483 DISTANCE = 6.57 ANGSTROMS DBREF 8TDX A 1 227 PDB 8TDX 8TDX 1 227 DBREF 8TDX C 1 213 PDB 8TDX 8TDX 1 213 DBREF 8TDX D 1 213 PDB 8TDX 8TDX 1 213 DBREF 8TDX B 1 227 PDB 8TDX 8TDX 1 227 DBREF 8TDX F 1 8 UNP P12489 ENV_HV1J3 524 531 DBREF 8TDX E 1 8 UNP P12489 ENV_HV1J3 524 531 SEQRES 1 A 227 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY VAL VAL LYS SEQRES 2 A 227 PRO SER GLU THR LEU SER LEU THR CYS GLU VAL SER LEU SEQRES 3 A 227 HIS ALA SER ARG VAL GLY SER TYR TYR TRP SER TRP ILE SEQRES 4 A 227 ARG GLN SER GLN GLY GLN ARG PRO GLU TRP MET GLY GLY SEQRES 5 A 227 LEU TYR SER ASP THR GLY ASN THR ASP TYR ASN PRO SER SEQRES 6 A 227 LEU LYS SER ARG VAL SER LEU SER ARG ASP MET SER LYS SEQRES 7 A 227 LYS GLN PHE PHE LEU ASN LEU ARG SER VAL THR ALA THR SEQRES 8 A 227 ASP THR ALA VAL TYR PHE CYS VAL SER ARG TYR VAL ASP SEQRES 9 A 227 HIS TRP THR ASN ARG ARG PHE ASP VAL TRP GLY PRO GLY SEQRES 10 A 227 ALA GLN VAL THR VAL THR SER ALA SER THR LYS GLY PRO SEQRES 11 A 227 SER VAL PHE PRO LEU ALA PRO SER SER ARG SER THR SER SEQRES 12 A 227 GLU SER THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 A 227 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SER SEQRES 14 A 227 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 A 227 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 A 227 PRO SER SER SER LEU GLY THR GLN THR TYR VAL CYS ASN SEQRES 17 A 227 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 18 A 227 VAL GLU ILE LYS THR CYS SEQRES 1 C 213 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 C 213 SER VAL GLY ASP ARG VAL THR VAL THR CYS ARG ALA SER SEQRES 3 C 213 LEU ASP ILE ASN LYS ASP LEU ASN TRP TYR GLN GLN LYS SEQRES 4 C 213 PRO GLY LYS ALA PRO ALA LEU LEU ILE TYR ALA ALA SER SEQRES 5 C 213 THR LEU GLN THR GLY VAL SER SER ARG PHE SER GLY SER SEQRES 6 C 213 GLY SER GLY THR GLN PHE THR LEU THR ILE SER SER LEU SEQRES 7 C 213 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS LEU GLN ASP SEQRES 8 C 213 TYR SER PHE PRO LEU THR PHE GLY GLY GLY THR LYS ILE SEQRES 9 C 213 ASP LEU LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 C 213 PHE PRO PRO SER GLU ASP GLN VAL LYS SER GLY THR VAL SEQRES 11 C 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 C 213 ALA SER VAL LYS TRP LYS VAL ASP GLY ALA LEU LYS THR SEQRES 13 C 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 C 213 ASP ASN THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 C 213 SER THR GLU TYR GLN SER HIS LYS VAL TYR ALA CYS GLU SEQRES 16 C 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 C 213 PHE ASN ARG ALA ALA SEQRES 1 D 213 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 D 213 SER VAL GLY ASP ARG VAL THR VAL THR CYS ARG ALA SER SEQRES 3 D 213 LEU ASP ILE ASN LYS ASP LEU ASN TRP TYR GLN GLN LYS SEQRES 4 D 213 PRO GLY LYS ALA PRO ALA LEU LEU ILE TYR ALA ALA SER SEQRES 5 D 213 THR LEU GLN THR GLY VAL SER SER ARG PHE SER GLY SER SEQRES 6 D 213 GLY SER GLY THR GLN PHE THR LEU THR ILE SER SER LEU SEQRES 7 D 213 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS LEU GLN ASP SEQRES 8 D 213 TYR SER PHE PRO LEU THR PHE GLY GLY GLY THR LYS ILE SEQRES 9 D 213 ASP LEU LYS ARG THR VAL ALA ALA PRO SER VAL PHE ILE SEQRES 10 D 213 PHE PRO PRO SER GLU ASP GLN VAL LYS SER GLY THR VAL SEQRES 11 D 213 SER VAL VAL CYS LEU LEU ASN ASN PHE TYR PRO ARG GLU SEQRES 12 D 213 ALA SER VAL LYS TRP LYS VAL ASP GLY ALA LEU LYS THR SEQRES 13 D 213 GLY ASN SER GLN GLU SER VAL THR GLU GLN ASP SER LYS SEQRES 14 D 213 ASP ASN THR TYR SER LEU SER SER THR LEU THR LEU SER SEQRES 15 D 213 SER THR GLU TYR GLN SER HIS LYS VAL TYR ALA CYS GLU SEQRES 16 D 213 VAL THR HIS GLN GLY LEU SER SER PRO VAL THR LYS SER SEQRES 17 D 213 PHE ASN ARG ALA ALA SEQRES 1 B 227 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY VAL VAL LYS SEQRES 2 B 227 PRO SER GLU THR LEU SER LEU THR CYS GLU VAL SER LEU SEQRES 3 B 227 HIS ALA SER ARG VAL GLY SER TYR TYR TRP SER TRP ILE SEQRES 4 B 227 ARG GLN SER GLN GLY GLN ARG PRO GLU TRP MET GLY GLY SEQRES 5 B 227 LEU TYR SER ASP THR GLY ASN THR ASP TYR ASN PRO SER SEQRES 6 B 227 LEU LYS SER ARG VAL SER LEU SER ARG ASP MET SER LYS SEQRES 7 B 227 LYS GLN PHE PHE LEU ASN LEU ARG SER VAL THR ALA THR SEQRES 8 B 227 ASP THR ALA VAL TYR PHE CYS VAL SER ARG TYR VAL ASP SEQRES 9 B 227 HIS TRP THR ASN ARG ARG PHE ASP VAL TRP GLY PRO GLY SEQRES 10 B 227 ALA GLN VAL THR VAL THR SER ALA SER THR LYS GLY PRO SEQRES 11 B 227 SER VAL PHE PRO LEU ALA PRO SER SER ARG SER THR SER SEQRES 12 B 227 GLU SER THR ALA ALA LEU GLY CYS LEU VAL LYS ASP TYR SEQRES 13 B 227 PHE PRO GLU PRO VAL THR VAL SER TRP ASN SER GLY SER SEQRES 14 B 227 LEU THR SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SEQRES 15 B 227 SER SER GLY LEU TYR SER LEU SER SER VAL VAL THR VAL SEQRES 16 B 227 PRO SER SER SER LEU GLY THR GLN THR TYR VAL CYS ASN SEQRES 17 B 227 VAL ASN HIS LYS PRO SER ASN THR LYS VAL ASP LYS ARG SEQRES 18 B 227 VAL GLU ILE LYS THR CYS SEQRES 1 F 8 ALA VAL GLY ILE GLY ALA VAL PHE SEQRES 1 E 8 ALA VAL GLY ILE GLY ALA VAL PHE FORMUL 7 HOH *758(H2 O) HELIX 1 AA1 THR A 89 THR A 93 5 5 HELIX 2 AA2 SER A 139 GLU A 144 5 6 HELIX 3 AA3 SER A 167 SER A 169 5 3 HELIX 4 AA4 SER A 198 LEU A 200 5 3 HELIX 5 AA5 LYS A 212 ASN A 215 5 4 HELIX 6 AA6 GLN C 79 PHE C 83 5 5 HELIX 7 AA7 SER C 121 SER C 127 1 7 HELIX 8 AA8 SER C 183 GLN C 187 1 5 HELIX 9 AA9 GLN D 79 PHE D 83 5 5 HELIX 10 AB1 SER D 121 LYS D 126 1 6 HELIX 11 AB2 SER D 183 SER D 188 1 6 HELIX 12 AB3 THR B 89 THR B 93 5 5 HELIX 13 AB4 SER B 138 SER B 143 5 6 HELIX 14 AB5 SER B 167 SER B 169 5 3 HELIX 15 AB6 SER B 198 LEU B 200 5 3 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O THR A 21 N SER A 7 SHEET 3 AA1 4 GLN A 80 LEU A 85 -1 O LEU A 85 N LEU A 18 SHEET 4 AA1 4 VAL A 70 ASP A 75 -1 N ASP A 75 O GLN A 80 SHEET 1 AA2 6 VAL A 11 VAL A 12 0 SHEET 2 AA2 6 ALA A 118 VAL A 122 1 O THR A 121 N VAL A 12 SHEET 3 AA2 6 ALA A 94 ASP A 104 -1 N TYR A 96 O ALA A 118 SHEET 4 AA2 6 TYR A 35 GLN A 41 -1 N ILE A 39 O PHE A 97 SHEET 5 AA2 6 GLU A 48 TYR A 54 -1 O GLU A 48 N ARG A 40 SHEET 6 AA2 6 THR A 60 TYR A 62 -1 O ASP A 61 N GLY A 52 SHEET 1 AA3 4 GLY A 32 SER A 33 0 SHEET 2 AA3 4 GLY E 5 VAL E 7 -1 O ALA E 6 N SER A 33 SHEET 3 AA3 4 ALA A 94 ASP A 104 1 N ARG A 101 O GLY E 5 SHEET 4 AA3 4 ASP A 112 TRP A 114 -1 O VAL A 113 N SER A 100 SHEET 1 AA4 4 SER A 131 LEU A 135 0 SHEET 2 AA4 4 THR A 146 TYR A 156 -1 O GLY A 150 N LEU A 135 SHEET 3 AA4 4 TYR A 187 PRO A 196 -1 O LEU A 189 N VAL A 153 SHEET 4 AA4 4 VAL A 174 THR A 176 -1 N HIS A 175 O VAL A 192 SHEET 1 AA5 4 SER A 131 LEU A 135 0 SHEET 2 AA5 4 THR A 146 TYR A 156 -1 O GLY A 150 N LEU A 135 SHEET 3 AA5 4 TYR A 187 PRO A 196 -1 O LEU A 189 N VAL A 153 SHEET 4 AA5 4 VAL A 180 LEU A 181 -1 N VAL A 180 O SER A 188 SHEET 1 AA6 3 THR A 162 TRP A 165 0 SHEET 2 AA6 3 VAL A 206 HIS A 211 -1 O ASN A 208 N SER A 164 SHEET 3 AA6 3 THR A 216 ARG A 221 -1 O VAL A 218 N VAL A 209 SHEET 1 AA7 4 MET C 4 SER C 7 0 SHEET 2 AA7 4 VAL C 19 ALA C 25 -1 O ARG C 24 N THR C 5 SHEET 3 AA7 4 GLN C 70 ILE C 75 -1 O ILE C 75 N VAL C 19 SHEET 4 AA7 4 PHE C 62 SER C 67 -1 N SER C 63 O THR C 74 SHEET 1 AA8 6 SER C 10 ALA C 13 0 SHEET 2 AA8 6 THR C 102 LEU C 106 1 O LYS C 103 N LEU C 11 SHEET 3 AA8 6 ALA C 84 GLN C 90 -1 N ALA C 84 O ILE C 104 SHEET 4 AA8 6 LEU C 33 GLN C 38 -1 N TYR C 36 O TYR C 87 SHEET 5 AA8 6 ALA C 45 TYR C 49 -1 O LEU C 47 N TRP C 35 SHEET 6 AA8 6 THR C 53 LEU C 54 -1 O THR C 53 N TYR C 49 SHEET 1 AA9 4 SER C 10 ALA C 13 0 SHEET 2 AA9 4 THR C 102 LEU C 106 1 O LYS C 103 N LEU C 11 SHEET 3 AA9 4 ALA C 84 GLN C 90 -1 N ALA C 84 O ILE C 104 SHEET 4 AA9 4 THR C 97 PHE C 98 -1 O THR C 97 N GLN C 90 SHEET 1 AB1 4 SER C 114 PHE C 118 0 SHEET 2 AB1 4 THR C 129 PHE C 139 -1 O LEU C 135 N PHE C 116 SHEET 3 AB1 4 TYR C 173 SER C 182 -1 O LEU C 179 N VAL C 132 SHEET 4 AB1 4 SER C 159 VAL C 163 -1 N SER C 162 O SER C 176 SHEET 1 AB2 4 ALA C 153 LYS C 155 0 SHEET 2 AB2 4 ALA C 144 VAL C 150 -1 N VAL C 150 O ALA C 153 SHEET 3 AB2 4 VAL C 191 HIS C 198 -1 O ALA C 193 N LYS C 149 SHEET 4 AB2 4 VAL C 205 ASN C 210 -1 O VAL C 205 N VAL C 196 SHEET 1 AB3 4 MET D 4 SER D 7 0 SHEET 2 AB3 4 VAL D 19 ALA D 25 -1 O ARG D 24 N THR D 5 SHEET 3 AB3 4 GLN D 70 ILE D 75 -1 O LEU D 73 N VAL D 21 SHEET 4 AB3 4 PHE D 62 SER D 67 -1 N SER D 63 O THR D 74 SHEET 1 AB4 6 SER D 10 ALA D 13 0 SHEET 2 AB4 6 THR D 102 LEU D 106 1 O LYS D 103 N LEU D 11 SHEET 3 AB4 6 ALA D 84 GLN D 90 -1 N ALA D 84 O ILE D 104 SHEET 4 AB4 6 LEU D 33 GLN D 38 -1 N TYR D 36 O TYR D 87 SHEET 5 AB4 6 ALA D 45 TYR D 49 -1 O ALA D 45 N GLN D 37 SHEET 6 AB4 6 THR D 53 LEU D 54 -1 O THR D 53 N TYR D 49 SHEET 1 AB5 4 SER D 10 ALA D 13 0 SHEET 2 AB5 4 THR D 102 LEU D 106 1 O LYS D 103 N LEU D 11 SHEET 3 AB5 4 ALA D 84 GLN D 90 -1 N ALA D 84 O ILE D 104 SHEET 4 AB5 4 THR D 97 PHE D 98 -1 O THR D 97 N GLN D 90 SHEET 1 AB6 4 SER D 114 PHE D 118 0 SHEET 2 AB6 4 THR D 129 PHE D 139 -1 O LEU D 135 N PHE D 116 SHEET 3 AB6 4 TYR D 173 SER D 182 -1 O LEU D 181 N VAL D 130 SHEET 4 AB6 4 GLN D 160 VAL D 163 -1 N GLN D 160 O THR D 178 SHEET 1 AB7 4 ALA D 153 LYS D 155 0 SHEET 2 AB7 4 SER D 145 VAL D 150 -1 N TRP D 148 O LYS D 155 SHEET 3 AB7 4 VAL D 191 THR D 197 -1 O GLU D 195 N LYS D 147 SHEET 4 AB7 4 VAL D 205 ASN D 210 -1 O VAL D 205 N VAL D 196 SHEET 1 AB8 4 GLN B 3 SER B 7 0 SHEET 2 AB8 4 LEU B 18 SER B 25 -1 O GLU B 23 N GLN B 5 SHEET 3 AB8 4 GLN B 80 LEU B 85 -1 O LEU B 85 N LEU B 18 SHEET 4 AB8 4 VAL B 70 ASP B 75 -1 N ASP B 75 O GLN B 80 SHEET 1 AB9 6 VAL B 11 VAL B 12 0 SHEET 2 AB9 6 ALA B 118 VAL B 122 1 O THR B 121 N VAL B 12 SHEET 3 AB9 6 ALA B 94 ASP B 104 -1 N ALA B 94 O VAL B 120 SHEET 4 AB9 6 TYR B 35 GLN B 41 -1 N ILE B 39 O PHE B 97 SHEET 5 AB9 6 GLU B 48 TYR B 54 -1 O LEU B 53 N TRP B 36 SHEET 6 AB9 6 THR B 60 TYR B 62 -1 O ASP B 61 N GLY B 52 SHEET 1 AC1 4 VAL B 31 SER B 33 0 SHEET 2 AC1 4 GLY F 5 PHE F 8 -1 O PHE F 8 N VAL B 31 SHEET 3 AC1 4 ALA B 94 ASP B 104 1 N VAL B 103 O GLY F 5 SHEET 4 AC1 4 ASP B 112 TRP B 114 -1 O VAL B 113 N SER B 100 SHEET 1 AC2 4 SER B 131 LEU B 135 0 SHEET 2 AC2 4 THR B 146 TYR B 156 -1 O GLY B 150 N LEU B 135 SHEET 3 AC2 4 TYR B 187 PRO B 196 -1 O LEU B 189 N VAL B 153 SHEET 4 AC2 4 VAL B 174 THR B 176 -1 N HIS B 175 O VAL B 192 SHEET 1 AC3 4 SER B 131 LEU B 135 0 SHEET 2 AC3 4 THR B 146 TYR B 156 -1 O GLY B 150 N LEU B 135 SHEET 3 AC3 4 TYR B 187 PRO B 196 -1 O LEU B 189 N VAL B 153 SHEET 4 AC3 4 VAL B 180 LEU B 181 -1 N VAL B 180 O SER B 188 SHEET 1 AC4 3 THR B 162 TRP B 165 0 SHEET 2 AC4 3 VAL B 206 HIS B 211 -1 O ASN B 210 N THR B 162 SHEET 3 AC4 3 THR B 216 ARG B 221 -1 O VAL B 218 N VAL B 209 SSBOND 1 CYS A 22 CYS A 98 1555 1555 2.06 SSBOND 2 CYS A 151 CYS A 207 1555 1555 2.04 SSBOND 3 CYS C 23 CYS C 88 1555 1555 2.06 SSBOND 4 CYS C 134 CYS C 194 1555 1555 2.04 SSBOND 5 CYS D 23 CYS D 88 1555 1555 2.05 SSBOND 6 CYS D 134 CYS D 194 1555 1555 2.04 SSBOND 7 CYS B 22 CYS B 98 1555 1555 2.04 SSBOND 8 CYS B 151 CYS B 207 1555 1555 2.04 CISPEP 1 PHE A 157 PRO A 158 0 -2.22 CISPEP 2 GLU A 159 PRO A 160 0 -1.99 CISPEP 3 SER C 7 PRO C 8 0 -5.62 CISPEP 4 PHE C 94 PRO C 95 0 -3.67 CISPEP 5 TYR C 140 PRO C 141 0 3.50 CISPEP 6 SER D 7 PRO D 8 0 -3.52 CISPEP 7 PHE D 94 PRO D 95 0 -2.98 CISPEP 8 TYR D 140 PRO D 141 0 3.02 CISPEP 9 PHE B 157 PRO B 158 0 -7.50 CISPEP 10 GLU B 159 PRO B 160 0 -2.00 CRYST1 84.464 88.926 129.108 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011839 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011245 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007745 0.00000