HEADER TRANSFERASE 11-JUL-23 8TFO TITLE STRUCTURE OF MKVAR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEVALONATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RAMAZZOTTIUS VARIEORNATUS; SOURCE 3 ORGANISM_TAXID: 947166; SOURCE 4 GENE: RVY_15762-1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS EXTREMO-TOLERANT, PSYCHROPHILIC, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR T.S.PEAT,J.NEWMAN,L.ESQUIROL,T.NEBL,C.SCOTT,C.VICKERS,F.SAINSBURY REVDAT 1 13-MAR-24 8TFO 0 JRNL AUTH L.ESQUIROL,J.NEWMAN,T.NEBL,C.SCOTT,C.VICKERS,F.SAINSBURY, JRNL AUTH 2 T.S.PEAT JRNL TITL CHARACTERIZATION OF NOVEL MEVALONATE KINASES FROM THE JRNL TITL 2 TARDIGRADE RAMAZZOTTIUS VARIEORNATUS AND THE PSYCHROPHILIC JRNL TITL 3 ARCHAEON METHANOCOCCOIDES BURTONII. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 80 203 2024 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 38411551 JRNL DOI 10.1107/S2059798324001360 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0415 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 52296 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.968 REMARK 3 FREE R VALUE TEST SET COUNT : 2598 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3651 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.97 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5885 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 151 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.53900 REMARK 3 B22 (A**2) : 1.81800 REMARK 3 B33 (A**2) : -4.35700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.208 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.181 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.226 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6038 ; 0.006 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): 5893 ; 0.002 ; 0.016 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8172 ; 1.262 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13576 ; 0.431 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 779 ; 6.357 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ; 9.415 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1063 ;15.159 ;10.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 968 ; 0.058 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7001 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1263 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1242 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 88 ; 0.213 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2984 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 179 ; 0.159 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.020 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): 1 ; 0.073 ; 0.200 REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3119 ; 3.108 ; 4.133 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3119 ; 3.108 ; 4.133 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3897 ; 4.712 ; 7.415 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3898 ; 4.712 ; 7.417 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2919 ; 3.781 ; 4.536 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2920 ; 3.780 ; 4.536 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4275 ; 5.897 ; 8.163 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4276 ; 5.896 ; 8.163 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 405 NULL REMARK 3 1 A 1 A 405 NULL REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 8TFO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-23. REMARK 100 THE DEPOSITION ID IS D_1000275756. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953723 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 9M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52511 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 45.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 27.10 REMARK 200 R MERGE (I) : 0.29200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 26.80 REMARK 200 R MERGE FOR SHELL (I) : 4.65600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN BOUND TO MEVALONATE AT ABOUT 3 REMARK 280 MG/ML WAS SET UP IN 150 NL PLUS 150 NL DROPS OVER 50 MICROLITRES REMARK 280 OF RESERVOIR WHICH CONTAINED: 0.126 M CALCIUM ACETATE, 24.9 V/V REMARK 280 PEG 400, 0.09 M SODIUM HEPES PH 8.4 WITH 10 MM TAURINE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.54050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.73350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.35250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 103.73350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.54050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.35250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 TYR A 103 REMARK 465 GLN A 104 REMARK 465 ASN A 105 REMARK 465 GLY A 106 REMARK 465 ASP A 107 REMARK 465 GLY A 108 REMARK 465 PRO A 109 REMARK 465 ALA A 110 REMARK 465 VAL A 111 REMARK 465 GLY A 112 REMARK 465 ASN A 113 REMARK 465 PRO A 114 REMARK 465 GLN A 115 REMARK 465 ALA A 116 REMARK 465 TYR A 117 REMARK 465 SER A 118 REMARK 465 SER A 407 REMARK 465 MET B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 SER B 99 REMARK 465 GLY B 100 REMARK 465 HIS B 101 REMARK 465 HIS B 102 REMARK 465 TYR B 103 REMARK 465 GLN B 104 REMARK 465 ASN B 105 REMARK 465 GLY B 106 REMARK 465 ASP B 107 REMARK 465 GLY B 108 REMARK 465 PRO B 109 REMARK 465 ALA B 110 REMARK 465 VAL B 111 REMARK 465 GLY B 112 REMARK 465 ASN B 113 REMARK 465 PRO B 114 REMARK 465 GLN B 115 REMARK 465 ALA B 116 REMARK 465 GLY B 406 REMARK 465 SER B 407 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 74 CG CD CE NZ REMARK 470 ASN A 80 CG OD1 ND2 REMARK 470 ASN A 81 CG OD1 ND2 REMARK 470 THR A 119 OG1 CG2 REMARK 470 SER A 121 OG REMARK 470 ASP A 184 CG OD1 OD2 REMARK 470 ARG A 185 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 186 CG CD CE NZ REMARK 470 ASP A 192 CG OD1 OD2 REMARK 470 ARG A 261 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 70 CG CD CE NZ REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 ILE B 77 CG1 CG2 CD1 REMARK 470 ASP B 78 CG OD1 OD2 REMARK 470 ASN B 80 CG OD1 ND2 REMARK 470 TYR B 117 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 21 -49.79 72.57 REMARK 500 TYR A 25 47.34 -109.53 REMARK 500 PHE A 57 -49.96 -154.83 REMARK 500 ILE A 244 15.86 -140.33 REMARK 500 GLU A 386 34.71 72.39 REMARK 500 HIS B 21 -50.02 75.17 REMARK 500 TYR B 25 43.70 -106.65 REMARK 500 PHE B 57 -50.79 -154.68 REMARK 500 MET B 96 3.51 -67.86 REMARK 500 VAL B 191 100.75 -171.78 REMARK 500 GLU B 386 31.75 73.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 39 0.09 SIDE CHAIN REMARK 500 ARG B 37 0.12 SIDE CHAIN REMARK 500 ARG B 95 0.08 SIDE CHAIN REMARK 500 ARG B 274 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 323 OD1 REMARK 620 2 HOH A 660 O 133.4 REMARK 620 3 ASN B 323 OD1 133.2 3.1 REMARK 620 N 1 2 DBREF1 8TFO A 1 405 UNP A0A1D1VW28_RAMVA DBREF2 8TFO A A0A1D1VW28 1 405 DBREF1 8TFO B 1 405 UNP A0A1D1VW28_RAMVA DBREF2 8TFO B A0A1D1VW28 1 405 SEQADV 8TFO MET A -8 UNP A0A1D1VW2 INITIATING METHIONINE SEQADV 8TFO HIS A -7 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO HIS A -6 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO HIS A -5 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO HIS A -4 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO HIS A -3 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO HIS A -2 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO GLY A -1 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO SER A 0 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO GLY A 406 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO SER A 407 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO MET B -8 UNP A0A1D1VW2 INITIATING METHIONINE SEQADV 8TFO HIS B -7 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO HIS B -6 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO HIS B -5 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO HIS B -4 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO HIS B -3 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO HIS B -2 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO GLY B -1 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO SER B 0 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO GLY B 406 UNP A0A1D1VW2 EXPRESSION TAG SEQADV 8TFO SER B 407 UNP A0A1D1VW2 EXPRESSION TAG SEQRES 1 A 416 MET HIS HIS HIS HIS HIS HIS GLY SER MET SER ASN LEU SEQRES 2 A 416 ARG HIS LEU ARG VAL SER ALA PRO GLY LYS ILE ILE LEU SEQRES 3 A 416 HIS GLY GLU HIS ALA VAL VAL TYR GLN LYS THR ALA VAL SEQRES 4 A 416 ALA LEU SER LEU GLY LEU ARG THR ARG LEU ASP LEU THR SEQRES 5 A 416 GLU THR THR ASP GLY ARG ILE SER ILE ILE MET ASP LYS SEQRES 6 A 416 PHE LEU GLN HIS THR SER TRP SER VAL GLU GLU LEU SER SEQRES 7 A 416 LYS ILE ILE ASP LYS VAL LYS ILE ASP ALA ASN ASN PRO SEQRES 8 A 416 GLU THR GLU LEU ASP GLN GLU LEU VAL GLU ASP LEU ARG SEQRES 9 A 416 MET MET THR SER GLY HIS HIS TYR GLN ASN GLY ASP GLY SEQRES 10 A 416 PRO ALA VAL GLY ASN PRO GLN ALA TYR SER THR GLN SER SEQRES 11 A 416 VAL ALA LEU VAL GLY PHE LEU TYR ILE LEU VAL LYS LEU SEQRES 12 A 416 CYS LYS PHE SER GLY LYS GLN ARG PRO PRO SER ILE GLN SEQRES 13 A 416 ILE SER ILE SER SER ASP ILE ALA ILE SER ALA GLY LEU SEQRES 14 A 416 GLY SER SER ALA ALA PHE ALA VAL CYS LEU SER ALA SER SEQRES 15 A 416 LEU LEU SER TYR LEU GLY ILE ILE VAL CYS ASP ARG LYS SEQRES 16 A 416 ASN CYS ALA ASP VAL ASP GLY LYS LEU VAL PRO SER ALA SEQRES 17 A 416 ASP GLN LEU ALA LEU ILE ASN HIS TRP ALA PHE MET VAL SEQRES 18 A 416 GLU LYS ILE VAL HIS GLY SER ALA SER GLY VAL ASP ASN SEQRES 19 A 416 ALA VAL SER THR TYR GLY GLY SER ILE LYS TYR ARG ASN SEQRES 20 A 416 ASN GLU LEU THR ARG ILE GLY SER GLY LEU LYS LEU ASP SEQRES 21 A 416 VAL LEU ILE VAL ASP THR HIS VAL GLN ARG ASP THR LYS SEQRES 22 A 416 LYS MET LEU ASP ILE VAL ARG HIS ARG ARG LYS LEU TYR SEQRES 23 A 416 PRO ALA ILE THR ASN PRO VAL LEU GLU ALA ILE ASP GLY SEQRES 24 A 416 ILE SER GLU THR SER SER LYS ILE LEU GLN HIS GLY ASP SEQRES 25 A 416 GLY LEU PRO THR GLY GLU GLU TYR GLU VAL ILE ALA ASP SEQRES 26 A 416 LEU VAL ARG MET ASN GLN ASN LEU LEU SER THR LEU GLY SEQRES 27 A 416 VAL SER HIS PRO LYS LEU ASP VAL ILE CYS GLU THR ALA SEQRES 28 A 416 SER ARG PHE GLY GLN ALA GLY LYS LEU THR GLY ALA GLY SEQRES 29 A 416 GLY GLY GLY CYS ALA ILE VAL VAL LEU ASP PRO ASP MET SEQRES 30 A 416 ARG GLN PHE GLU HIS LEU ARG GLU SER ILE ILE ALA GLU SEQRES 31 A 416 TYR ARG ARG MET GLU PHE LYS PRO HIS LEU ALA GLU LEU SEQRES 32 A 416 GLY GLY PRO GLY VAL LEU PHE HIS PRO VAL PRO GLY SER SEQRES 1 B 416 MET HIS HIS HIS HIS HIS HIS GLY SER MET SER ASN LEU SEQRES 2 B 416 ARG HIS LEU ARG VAL SER ALA PRO GLY LYS ILE ILE LEU SEQRES 3 B 416 HIS GLY GLU HIS ALA VAL VAL TYR GLN LYS THR ALA VAL SEQRES 4 B 416 ALA LEU SER LEU GLY LEU ARG THR ARG LEU ASP LEU THR SEQRES 5 B 416 GLU THR THR ASP GLY ARG ILE SER ILE ILE MET ASP LYS SEQRES 6 B 416 PHE LEU GLN HIS THR SER TRP SER VAL GLU GLU LEU SER SEQRES 7 B 416 LYS ILE ILE ASP LYS VAL LYS ILE ASP ALA ASN ASN PRO SEQRES 8 B 416 GLU THR GLU LEU ASP GLN GLU LEU VAL GLU ASP LEU ARG SEQRES 9 B 416 MET MET THR SER GLY HIS HIS TYR GLN ASN GLY ASP GLY SEQRES 10 B 416 PRO ALA VAL GLY ASN PRO GLN ALA TYR SER THR GLN SER SEQRES 11 B 416 VAL ALA LEU VAL GLY PHE LEU TYR ILE LEU VAL LYS LEU SEQRES 12 B 416 CYS LYS PHE SER GLY LYS GLN ARG PRO PRO SER ILE GLN SEQRES 13 B 416 ILE SER ILE SER SER ASP ILE ALA ILE SER ALA GLY LEU SEQRES 14 B 416 GLY SER SER ALA ALA PHE ALA VAL CYS LEU SER ALA SER SEQRES 15 B 416 LEU LEU SER TYR LEU GLY ILE ILE VAL CYS ASP ARG LYS SEQRES 16 B 416 ASN CYS ALA ASP VAL ASP GLY LYS LEU VAL PRO SER ALA SEQRES 17 B 416 ASP GLN LEU ALA LEU ILE ASN HIS TRP ALA PHE MET VAL SEQRES 18 B 416 GLU LYS ILE VAL HIS GLY SER ALA SER GLY VAL ASP ASN SEQRES 19 B 416 ALA VAL SER THR TYR GLY GLY SER ILE LYS TYR ARG ASN SEQRES 20 B 416 ASN GLU LEU THR ARG ILE GLY SER GLY LEU LYS LEU ASP SEQRES 21 B 416 VAL LEU ILE VAL ASP THR HIS VAL GLN ARG ASP THR LYS SEQRES 22 B 416 LYS MET LEU ASP ILE VAL ARG HIS ARG ARG LYS LEU TYR SEQRES 23 B 416 PRO ALA ILE THR ASN PRO VAL LEU GLU ALA ILE ASP GLY SEQRES 24 B 416 ILE SER GLU THR SER SER LYS ILE LEU GLN HIS GLY ASP SEQRES 25 B 416 GLY LEU PRO THR GLY GLU GLU TYR GLU VAL ILE ALA ASP SEQRES 26 B 416 LEU VAL ARG MET ASN GLN ASN LEU LEU SER THR LEU GLY SEQRES 27 B 416 VAL SER HIS PRO LYS LEU ASP VAL ILE CYS GLU THR ALA SEQRES 28 B 416 SER ARG PHE GLY GLN ALA GLY LYS LEU THR GLY ALA GLY SEQRES 29 B 416 GLY GLY GLY CYS ALA ILE VAL VAL LEU ASP PRO ASP MET SEQRES 30 B 416 ARG GLN PHE GLU HIS LEU ARG GLU SER ILE ILE ALA GLU SEQRES 31 B 416 TYR ARG ARG MET GLU PHE LYS PRO HIS LEU ALA GLU LEU SEQRES 32 B 416 GLY GLY PRO GLY VAL LEU PHE HIS PRO VAL PRO GLY SER HET MEV A 501 10 HET PEG A 502 7 HET MEV B 501 10 HET PEG B 502 7 HET CA B 503 1 HETNAM MEV (R)-MEVALONATE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM CA CALCIUM ION FORMUL 3 MEV 2(C6 H11 O4 1-) FORMUL 4 PEG 2(C4 H10 O3) FORMUL 7 CA CA 2+ FORMUL 8 HOH *151(H2 O) HELIX 1 AA1 HIS A 21 GLN A 26 5 6 HELIX 2 AA2 VAL A 65 VAL A 75 1 11 HELIX 3 AA3 ASP A 87 SER A 99 1 13 HELIX 4 AA4 GLN A 120 GLY A 139 1 20 HELIX 5 AA5 ALA A 155 GLY A 159 5 5 HELIX 6 AA6 GLY A 161 LEU A 178 1 18 HELIX 7 AA7 SER A 198 HIS A 217 1 20 HELIX 8 AA8 GLY A 222 GLY A 231 1 10 HELIX 9 AA9 ASP A 262 TYR A 277 1 16 HELIX 10 AB1 TYR A 277 GLY A 302 1 26 HELIX 11 AB2 THR A 307 LEU A 328 1 22 HELIX 12 AB3 HIS A 332 PHE A 345 1 14 HELIX 13 AB4 ASP A 365 PHE A 371 1 7 HELIX 14 AB5 PHE A 371 MET A 385 1 15 HELIX 15 AB6 HIS B 21 GLN B 26 5 6 HELIX 16 AB7 VAL B 65 LYS B 74 1 10 HELIX 17 AB8 ASP B 87 MET B 96 1 10 HELIX 18 AB9 SER B 118 GLY B 139 1 22 HELIX 19 AC1 ALA B 155 GLY B 159 5 5 HELIX 20 AC2 GLY B 161 LEU B 178 1 18 HELIX 21 AC3 SER B 198 HIS B 217 1 20 HELIX 22 AC4 GLY B 222 GLY B 231 1 10 HELIX 23 AC5 ASP B 262 TYR B 277 1 16 HELIX 24 AC6 TYR B 277 GLY B 302 1 26 HELIX 25 AC7 THR B 307 LEU B 328 1 22 HELIX 26 AC8 HIS B 332 PHE B 345 1 14 HELIX 27 AC9 ASP B 365 GLN B 370 5 6 HELIX 28 AD1 PHE B 371 MET B 385 1 15 SHEET 1 AA1 6 LEU A 58 SER A 64 0 SHEET 2 AA1 6 ARG A 49 MET A 54 -1 N ILE A 52 O THR A 61 SHEET 3 AA1 6 ILE A 146 SER A 152 1 O ILE A 150 N ILE A 53 SHEET 4 AA1 6 ALA A 29 GLU A 44 -1 N ARG A 39 O SER A 151 SHEET 5 AA1 6 SER A 233 ARG A 237 -1 O TYR A 236 N ALA A 29 SHEET 6 AA1 6 GLU A 240 ARG A 243 -1 O THR A 242 N LYS A 235 SHEET 1 AA2 6 LEU A 58 SER A 64 0 SHEET 2 AA2 6 ARG A 49 MET A 54 -1 N ILE A 52 O THR A 61 SHEET 3 AA2 6 ILE A 146 SER A 152 1 O ILE A 150 N ILE A 53 SHEET 4 AA2 6 ALA A 29 GLU A 44 -1 N ARG A 39 O SER A 151 SHEET 5 AA2 6 HIS A 6 HIS A 18 -1 N LEU A 7 O LEU A 42 SHEET 6 AA2 6 LEU A 400 HIS A 402 -1 O HIS A 402 N ARG A 8 SHEET 1 AA3 2 ALA A 189 VAL A 191 0 SHEET 2 AA3 2 LYS A 194 VAL A 196 -1 O LYS A 194 N VAL A 191 SHEET 1 AA4 4 ALA A 348 LEU A 351 0 SHEET 2 AA4 4 CYS A 359 VAL A 363 -1 O ILE A 361 N LYS A 350 SHEET 3 AA4 4 VAL A 252 ASP A 256 -1 N LEU A 253 O VAL A 362 SHEET 4 AA4 4 LYS A 388 LEU A 391 -1 O HIS A 390 N ILE A 254 SHEET 1 AA5 6 LEU B 58 SER B 64 0 SHEET 2 AA5 6 ARG B 49 MET B 54 -1 N ILE B 50 O TRP B 63 SHEET 3 AA5 6 ILE B 146 SER B 152 1 O ILE B 150 N ILE B 53 SHEET 4 AA5 6 ALA B 29 GLU B 44 -1 N ARG B 39 O SER B 151 SHEET 5 AA5 6 SER B 233 ARG B 237 -1 O TYR B 236 N ALA B 29 SHEET 6 AA5 6 GLU B 240 ARG B 243 -1 O THR B 242 N LYS B 235 SHEET 1 AA6 6 LEU B 58 SER B 64 0 SHEET 2 AA6 6 ARG B 49 MET B 54 -1 N ILE B 50 O TRP B 63 SHEET 3 AA6 6 ILE B 146 SER B 152 1 O ILE B 150 N ILE B 53 SHEET 4 AA6 6 ALA B 29 GLU B 44 -1 N ARG B 39 O SER B 151 SHEET 5 AA6 6 HIS B 6 HIS B 18 -1 N LEU B 7 O LEU B 42 SHEET 6 AA6 6 LEU B 400 PHE B 401 -1 O LEU B 400 N SER B 10 SHEET 1 AA7 2 ALA B 189 VAL B 191 0 SHEET 2 AA7 2 LYS B 194 VAL B 196 -1 O LYS B 194 N VAL B 191 SHEET 1 AA8 4 ALA B 348 LEU B 351 0 SHEET 2 AA8 4 CYS B 359 VAL B 363 -1 O ILE B 361 N LYS B 350 SHEET 3 AA8 4 VAL B 252 ASP B 256 -1 N LEU B 253 O VAL B 362 SHEET 4 AA8 4 LYS B 388 LEU B 391 -1 O HIS B 390 N ILE B 254 SSBOND 1 CYS A 183 CYS A 188 1555 1555 2.06 SSBOND 2 CYS B 183 CYS B 188 1555 1555 2.15 LINK OD1 ASN A 323 CA CA B 503 1555 4566 2.35 LINK O HOH A 660 CA CA B 503 4466 1555 2.50 LINK OD1 ASN B 323 CA CA B 503 1555 1555 2.48 CRYST1 45.081 80.705 207.467 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022182 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004820 0.00000